data_6BDQ
#
_model_server_result.job_id            9m3VUDBJHQeehR-_Km7iNQ 
_model_server_result.datetime_utc      '2024-10-19 08:25:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bdq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6BDQ 
#
_exptl.entry_id    6BDQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              251.282 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2-nitro-4-{[(3S)-piperidin-3-yl]amino}phenyl)methanol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BDQ 
_cell.length_a            139.447 
_cell.length_b            38.668 
_cell.length_c            54.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BDQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 278.894 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 234 A GLN 232 1_555 A N SME 235 A SME 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C SME 235 A SME 233 1_555 A N THR 236 A THR 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C12 H17 N3 O3' 
_chem_comp.formula_weight    251.282 
_chem_comp.id                DE7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2-nitro-4-{[(3S)-piperidin-3-yl]amino}phenyl)methanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C2 DE7 sing 127 n n 
C7 O9 DE7 sing 128 n n 
C1 C2 DE7 doub 129 n y 
C1 C6 DE7 sing 130 n y 
C2 C3 DE7 sing 131 n y 
O10 N8 DE7 doub 132 n n 
C6 C5 DE7 doub 133 n y 
C3 N8 DE7 sing 134 n n 
C3 C4 DE7 doub 135 n y 
N8 O11 DE7 sing 136 n n 
C5 C4 DE7 sing 137 n y 
C5 N12 DE7 sing 138 n n 
N12 C15 DE7 sing 139 n n 
C15 C20 DE7 sing 140 n n 
C15 C16 DE7 sing 141 n n 
C20 N19 DE7 sing 142 n n 
C16 C17 DE7 sing 143 n n 
N19 C18 DE7 sing 144 n n 
C17 C18 DE7 sing 145 n n 
C1 H1 DE7 sing 146 n n 
C15 H2 DE7 sing 147 n n 
C16 H3 DE7 sing 148 n n 
C16 H4 DE7 sing 149 n n 
C17 H5 DE7 sing 150 n n 
C17 H6 DE7 sing 151 n n 
C18 H7 DE7 sing 152 n n 
C18 H8 DE7 sing 153 n n 
C20 H9 DE7 sing 154 n n 
C20 H10 DE7 sing 155 n n 
C4 H11 DE7 sing 156 n n 
C6 H12 DE7 sing 157 n n 
C7 H13 DE7 sing 158 n n 
C7 H14 DE7 sing 159 n n 
N12 H15 DE7 sing 160 n n 
N19 H16 DE7 sing 161 n n 
O9 H18 DE7 sing 162 n n 
#
_atom_sites.entry_id                     6BDQ 
_atom_sites.fract_transf_matrix[1][1]    0.007171 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025861 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A3P A 1 301 301 A3P A3P . 
C 3 DE7 A 1 302 302 DE7 74 . 
D 4 HOH A 1 401 99 HOH HOH . 
D 4 HOH A 2 402 62 HOH HOH . 
D 4 HOH A 3 403 85 HOH HOH . 
D 4 HOH A 4 404 71 HOH HOH . 
D 4 HOH A 5 405 73 HOH HOH . 
D 4 HOH A 6 406 91 HOH HOH . 
D 4 HOH A 7 407 8 HOH HOH . 
D 4 HOH A 8 408 39 HOH HOH . 
D 4 HOH A 9 409 69 HOH HOH . 
D 4 HOH A 10 410 105 HOH HOH . 
D 4 HOH A 11 411 36 HOH HOH . 
D 4 HOH A 12 412 79 HOH HOH . 
D 4 HOH A 13 413 24 HOH HOH . 
D 4 HOH A 14 414 57 HOH HOH . 
D 4 HOH A 15 415 75 HOH HOH . 
D 4 HOH A 16 416 84 HOH HOH . 
D 4 HOH A 17 417 54 HOH HOH . 
D 4 HOH A 18 418 9 HOH HOH . 
D 4 HOH A 19 419 93 HOH HOH . 
D 4 HOH A 20 420 16 HOH HOH . 
D 4 HOH A 21 421 70 HOH HOH . 
D 4 HOH A 22 422 14 HOH HOH . 
D 4 HOH A 23 423 3 HOH HOH . 
D 4 HOH A 24 424 68 HOH HOH . 
D 4 HOH A 25 425 35 HOH HOH . 
D 4 HOH A 26 426 28 HOH HOH . 
D 4 HOH A 27 427 5 HOH HOH . 
D 4 HOH A 28 428 19 HOH HOH . 
D 4 HOH A 29 429 122 HOH HOH . 
D 4 HOH A 30 430 89 HOH HOH . 
D 4 HOH A 31 431 1 HOH HOH . 
D 4 HOH A 32 432 49 HOH HOH . 
D 4 HOH A 33 433 10 HOH HOH . 
D 4 HOH A 34 434 27 HOH HOH . 
D 4 HOH A 35 435 17 HOH HOH . 
D 4 HOH A 36 436 65 HOH HOH . 
D 4 HOH A 37 437 82 HOH HOH . 
D 4 HOH A 38 438 26 HOH HOH . 
D 4 HOH A 39 439 44 HOH HOH . 
D 4 HOH A 40 440 101 HOH HOH . 
D 4 HOH A 41 441 7 HOH HOH . 
D 4 HOH A 42 442 22 HOH HOH . 
D 4 HOH A 43 443 4 HOH HOH . 
D 4 HOH A 44 444 77 HOH HOH . 
D 4 HOH A 45 445 66 HOH HOH . 
D 4 HOH A 46 446 53 HOH HOH . 
D 4 HOH A 47 447 43 HOH HOH . 
D 4 HOH A 48 448 33 HOH HOH . 
D 4 HOH A 49 449 13 HOH HOH . 
D 4 HOH A 50 450 64 HOH HOH . 
D 4 HOH A 51 451 60 HOH HOH . 
D 4 HOH A 52 452 76 HOH HOH . 
D 4 HOH A 53 453 90 HOH HOH . 
D 4 HOH A 54 454 6 HOH HOH . 
D 4 HOH A 55 455 67 HOH HOH . 
D 4 HOH A 56 456 98 HOH HOH . 
D 4 HOH A 57 457 88 HOH HOH . 
D 4 HOH A 58 458 29 HOH HOH . 
D 4 HOH A 59 459 55 HOH HOH . 
D 4 HOH A 60 460 18 HOH HOH . 
D 4 HOH A 61 461 81 HOH HOH . 
D 4 HOH A 62 462 20 HOH HOH . 
D 4 HOH A 63 463 63 HOH HOH . 
D 4 HOH A 64 464 34 HOH HOH . 
D 4 HOH A 65 465 38 HOH HOH . 
D 4 HOH A 66 466 47 HOH HOH . 
D 4 HOH A 67 467 32 HOH HOH . 
D 4 HOH A 68 468 56 HOH HOH . 
D 4 HOH A 69 469 59 HOH HOH . 
D 4 HOH A 70 470 100 HOH HOH . 
D 4 HOH A 71 471 45 HOH HOH . 
D 4 HOH A 72 472 124 HOH HOH . 
D 4 HOH A 73 473 95 HOH HOH . 
D 4 HOH A 74 474 119 HOH HOH . 
D 4 HOH A 75 475 31 HOH HOH . 
D 4 HOH A 76 476 37 HOH HOH . 
D 4 HOH A 77 477 118 HOH HOH . 
D 4 HOH A 78 478 46 HOH HOH . 
D 4 HOH A 79 479 72 HOH HOH . 
D 4 HOH A 80 480 21 HOH HOH . 
D 4 HOH A 81 481 12 HOH HOH . 
D 4 HOH A 82 482 108 HOH HOH . 
D 4 HOH A 83 483 40 HOH HOH . 
D 4 HOH A 84 484 94 HOH HOH . 
D 4 HOH A 85 485 15 HOH HOH . 
D 4 HOH A 86 486 106 HOH HOH . 
D 4 HOH A 87 487 30 HOH HOH . 
D 4 HOH A 88 488 102 HOH HOH . 
D 4 HOH A 89 489 50 HOH HOH . 
D 4 HOH A 90 490 120 HOH HOH . 
D 4 HOH A 91 491 121 HOH HOH . 
D 4 HOH A 92 492 23 HOH HOH . 
D 4 HOH A 93 493 41 HOH HOH . 
D 4 HOH A 94 494 107 HOH HOH . 
D 4 HOH A 95 495 83 HOH HOH . 
D 4 HOH A 96 496 103 HOH HOH . 
D 4 HOH A 97 497 52 HOH HOH . 
D 4 HOH A 98 498 48 HOH HOH . 
D 4 HOH A 99 499 116 HOH HOH . 
D 4 HOH A 100 500 51 HOH HOH . 
D 4 HOH A 101 501 42 HOH HOH . 
D 4 HOH A 102 502 58 HOH HOH . 
D 4 HOH A 103 503 112 HOH HOH . 
D 4 HOH A 104 504 111 HOH HOH . 
D 4 HOH A 105 505 92 HOH HOH . 
D 4 HOH A 106 506 78 HOH HOH . 
D 4 HOH A 107 507 125 HOH HOH . 
D 4 HOH A 108 508 61 HOH HOH . 
D 4 HOH A 109 509 2 HOH HOH . 
D 4 HOH A 110 510 127 HOH HOH . 
D 4 HOH A 111 511 115 HOH HOH . 
D 4 HOH A 112 512 123 HOH HOH . 
D 4 HOH A 113 513 96 HOH HOH . 
D 4 HOH A 114 514 114 HOH HOH . 
D 4 HOH A 115 515 110 HOH HOH . 
D 4 HOH A 116 516 117 HOH HOH . 
D 4 HOH A 117 517 25 HOH HOH . 
D 4 HOH A 118 518 87 HOH HOH . 
D 4 HOH A 119 519 86 HOH HOH . 
D 4 HOH A 120 520 109 HOH HOH . 
D 4 HOH A 121 521 113 HOH HOH . 
D 4 HOH A 122 522 104 HOH HOH . 
D 4 HOH A 123 523 126 HOH HOH . 
D 4 HOH A 124 524 80 HOH HOH . 
D 4 HOH A 125 525 74 HOH HOH . 
D 4 HOH A 126 526 11 HOH HOH . 
D 4 HOH A 127 527 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DE7 . . . C 3 111.287 8.705 13.732 1 23.58 ? C1 DE7 302 A 1 
HETATM 2 C C15 DE7 . . . C 3 107.859 8.302 17.13 1 18.53 ? C15 DE7 302 A 1 
HETATM 3 C C16 DE7 . . . C 3 108.801 8.924 18.149 1 19.14 ? C16 DE7 302 A 1 
HETATM 4 C C17 DE7 . . . C 3 108.305 8.756 19.578 1 21.15 ? C17 DE7 302 A 1 
HETATM 5 C C18 DE7 . . . C 3 106.875 9.271 19.714 1 21.57 ? C18 DE7 302 A 1 
HETATM 6 C C2 DE7 . . . C 3 111.788 7.431 13.97 1 18.88 ? C2 DE7 302 A 1 
HETATM 7 C C20 DE7 . . . C 3 106.433 8.803 17.378 1 18 ? C20 DE7 302 A 1 
HETATM 8 C C3 DE7 . . . C 3 111.119 6.572 14.847 1 25.44 ? C3 DE7 302 A 1 
HETATM 9 C C4 DE7 . . . C 3 109.936 6.999 15.458 1 24.3 ? C4 DE7 302 A 1 
HETATM 10 C C5 DE7 . . . C 3 109.439 8.28 15.226 1 23.65 ? C5 DE7 302 A 1 
HETATM 11 C C6 DE7 . . . C 3 110.12 9.128 14.352 1 21.53 ? C6 DE7 302 A 1 
HETATM 12 C C7 DE7 . . . C 3 113.074 7.061 13.254 1 25.67 ? C7 DE7 302 A 1 
HETATM 13 N N12 DE7 . . . C 3 108.29 8.708 15.807 1 22.18 ? N12 DE7 302 A 1 
HETATM 14 N N19 DE7 . . . C 3 106.026 8.524 18.773 1 20.41 ? N19 DE7 302 A 1 
HETATM 15 N N8 DE7 . . . C 3 111.538 5.251 15.128 1 29.2 ? N8 DE7 302 A 1 
HETATM 16 O O10 DE7 . . . C 3 111.877 4.483 14.217 1 27.87 ? O10 DE7 302 A 1 
HETATM 17 O O11 DE7 . . . C 3 111.519 4.808 16.288 1 28.54 ? O11 DE7 302 A 1 
HETATM 18 O O9 DE7 . . . C 3 113.977 6.497 14.207 1 25.57 ? O9 DE7 302 A 1 
#
_model_server_stats.io_time_ms              97 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           18 
#