data_6BEE # _model_server_result.job_id aq5n6mxmSLnbvc-l73-NTg _model_server_result.datetime_utc '2024-11-14 17:28:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6BEE # _exptl.entry_id 6BEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BEE _cell.length_a 191.14 _cell.length_b 191.14 _cell.length_c 253.27 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N ? 3 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6BEE _atom_sites.fract_transf_matrix[1][1] 0.005232 _atom_sites.fract_transf_matrix[1][2] 0.003021 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FMT A 1 601 6 FMT FMT . E 3 EDO A 1 602 2 EDO EDO . F 3 EDO A 1 603 10 EDO EDO . G 4 RXM B 1 601 1 RXM RXM . H 2 FMT B 1 602 3 FMT FMT . I 3 EDO B 1 603 3 EDO EDO . J 2 FMT C 1 601 1 FMT FMT . K 2 FMT C 1 602 2 FMT FMT . L 2 FMT C 1 603 8 FMT FMT . M 3 EDO C 1 604 1 EDO EDO . N 5 HOH A 1 701 659 HOH HOH . N 5 HOH A 2 702 595 HOH HOH . N 5 HOH A 3 703 303 HOH HOH . N 5 HOH A 4 704 687 HOH HOH . N 5 HOH A 5 705 667 HOH HOH . N 5 HOH A 6 706 596 HOH HOH . N 5 HOH A 7 707 639 HOH HOH . N 5 HOH A 8 708 1 HOH HOH . N 5 HOH A 9 709 601 HOH HOH . N 5 HOH A 10 710 73 HOH HOH . N 5 HOH A 11 711 612 HOH HOH . N 5 HOH A 12 712 61 HOH HOH . N 5 HOH A 13 713 643 HOH HOH . N 5 HOH A 14 714 624 HOH HOH . N 5 HOH A 15 715 346 HOH HOH . N 5 HOH A 16 716 679 HOH HOH . N 5 HOH A 17 717 350 HOH HOH . N 5 HOH A 18 718 633 HOH HOH . N 5 HOH A 19 719 670 HOH HOH . N 5 HOH A 20 720 660 HOH HOH . N 5 HOH A 21 721 24 HOH HOH . N 5 HOH A 22 722 481 HOH HOH . N 5 HOH A 23 723 626 HOH HOH . N 5 HOH A 24 724 413 HOH HOH . N 5 HOH A 25 725 674 HOH HOH . N 5 HOH A 26 726 105 HOH HOH . N 5 HOH A 27 727 210 HOH HOH . N 5 HOH A 28 728 689 HOH HOH . N 5 HOH A 29 729 678 HOH HOH . N 5 HOH A 30 730 46 HOH HOH . N 5 HOH A 31 731 17 HOH HOH . N 5 HOH A 32 732 621 HOH HOH . N 5 HOH A 33 733 116 HOH HOH . N 5 HOH A 34 734 686 HOH HOH . N 5 HOH A 35 735 189 HOH HOH . N 5 HOH A 36 736 100 HOH HOH . N 5 HOH A 37 737 372 HOH HOH . N 5 HOH A 38 738 625 HOH HOH . N 5 HOH A 39 739 658 HOH HOH . N 5 HOH A 40 740 122 HOH HOH . N 5 HOH A 41 741 95 HOH HOH . N 5 HOH A 42 742 349 HOH HOH . N 5 HOH A 43 743 128 HOH HOH . N 5 HOH A 44 744 672 HOH HOH . N 5 HOH A 45 745 166 HOH HOH . N 5 HOH A 46 746 315 HOH HOH . N 5 HOH A 47 747 62 HOH HOH . N 5 HOH A 48 748 196 HOH HOH . N 5 HOH A 49 749 41 HOH HOH . N 5 HOH A 50 750 548 HOH HOH . N 5 HOH A 51 751 209 HOH HOH . N 5 HOH A 52 752 652 HOH HOH . N 5 HOH A 53 753 515 HOH HOH . N 5 HOH A 54 754 550 HOH HOH . N 5 HOH A 55 755 192 HOH HOH . N 5 HOH A 56 756 690 HOH HOH . N 5 HOH A 57 757 510 HOH HOH . N 5 HOH A 58 758 178 HOH HOH . N 5 HOH A 59 759 177 HOH HOH . N 5 HOH A 60 760 661 HOH HOH . N 5 HOH A 61 761 146 HOH HOH . N 5 HOH A 62 762 231 HOH HOH . N 5 HOH A 63 763 467 HOH HOH . N 5 HOH A 64 764 31 HOH HOH . N 5 HOH A 65 765 10 HOH HOH . N 5 HOH A 66 766 42 HOH HOH . N 5 HOH A 67 767 605 HOH HOH . N 5 HOH A 68 768 28 HOH HOH . N 5 HOH A 69 769 308 HOH HOH . N 5 HOH A 70 770 143 HOH HOH . N 5 HOH A 71 771 330 HOH HOH . N 5 HOH A 72 772 640 HOH HOH . N 5 HOH A 73 773 168 HOH HOH . N 5 HOH A 74 774 610 HOH HOH . N 5 HOH A 75 775 52 HOH HOH . N 5 HOH A 76 776 85 HOH HOH . N 5 HOH A 77 777 485 HOH HOH . N 5 HOH A 78 778 688 HOH HOH . N 5 HOH A 79 779 152 HOH HOH . N 5 HOH A 80 780 653 HOH HOH . N 5 HOH A 81 781 18 HOH HOH . N 5 HOH A 82 782 70 HOH HOH . N 5 HOH A 83 783 108 HOH HOH . N 5 HOH A 84 784 59 HOH HOH . N 5 HOH A 85 785 220 HOH HOH . N 5 HOH A 86 786 614 HOH HOH . N 5 HOH A 87 787 336 HOH HOH . N 5 HOH A 88 788 132 HOH HOH . N 5 HOH A 89 789 251 HOH HOH . N 5 HOH A 90 790 400 HOH HOH . N 5 HOH A 91 791 340 HOH HOH . N 5 HOH A 92 792 691 HOH HOH . N 5 HOH A 93 793 238 HOH HOH . N 5 HOH A 94 794 431 HOH HOH . N 5 HOH A 95 795 127 HOH HOH . N 5 HOH A 96 796 582 HOH HOH . N 5 HOH A 97 797 80 HOH HOH . N 5 HOH A 98 798 203 HOH HOH . N 5 HOH A 99 799 3 HOH HOH . N 5 HOH A 100 800 181 HOH HOH . N 5 HOH A 101 801 479 HOH HOH . N 5 HOH A 102 802 234 HOH HOH . N 5 HOH A 103 803 102 HOH HOH . N 5 HOH A 104 804 641 HOH HOH . N 5 HOH A 105 805 68 HOH HOH . N 5 HOH A 106 806 136 HOH HOH . N 5 HOH A 107 807 623 HOH HOH . N 5 HOH A 108 808 56 HOH HOH . N 5 HOH A 109 809 208 HOH HOH . N 5 HOH A 110 810 370 HOH HOH . N 5 HOH A 111 811 45 HOH HOH . N 5 HOH A 112 812 200 HOH HOH . O 5 HOH B 1 701 48 HOH HOH . O 5 HOH B 2 702 115 HOH HOH . O 5 HOH B 3 703 229 HOH HOH . O 5 HOH B 4 704 202 HOH HOH . O 5 HOH B 5 705 92 HOH HOH . O 5 HOH B 6 706 680 HOH HOH . O 5 HOH B 7 707 628 HOH HOH . O 5 HOH B 8 708 66 HOH HOH . O 5 HOH B 9 709 648 HOH HOH . O 5 HOH B 10 710 668 HOH HOH . O 5 HOH B 11 711 111 HOH HOH . O 5 HOH B 12 712 669 HOH HOH . O 5 HOH B 13 713 219 HOH HOH . O 5 HOH B 14 714 373 HOH HOH . O 5 HOH B 15 715 649 HOH HOH . O 5 HOH B 16 716 273 HOH HOH . O 5 HOH B 17 717 150 HOH HOH . O 5 HOH B 18 718 139 HOH HOH . O 5 HOH B 19 719 618 HOH HOH . O 5 HOH B 20 720 49 HOH HOH . O 5 HOH B 21 721 666 HOH HOH . O 5 HOH B 22 722 422 HOH HOH . O 5 HOH B 23 723 662 HOH HOH . O 5 HOH B 24 724 186 HOH HOH . O 5 HOH B 25 725 74 HOH HOH . O 5 HOH B 26 726 156 HOH HOH . O 5 HOH B 27 727 120 HOH HOH . O 5 HOH B 28 728 490 HOH HOH . O 5 HOH B 29 729 235 HOH HOH . O 5 HOH B 30 730 404 HOH HOH . O 5 HOH B 31 731 665 HOH HOH . O 5 HOH B 32 732 627 HOH HOH . O 5 HOH B 33 733 138 HOH HOH . O 5 HOH B 34 734 27 HOH HOH . O 5 HOH B 35 735 338 HOH HOH . O 5 HOH B 36 736 415 HOH HOH . O 5 HOH B 37 737 297 HOH HOH . O 5 HOH B 38 738 388 HOH HOH . O 5 HOH B 39 739 175 HOH HOH . O 5 HOH B 40 740 30 HOH HOH . O 5 HOH B 41 741 514 HOH HOH . O 5 HOH B 42 742 87 HOH HOH . O 5 HOH B 43 743 552 HOH HOH . O 5 HOH B 44 744 276 HOH HOH . O 5 HOH B 45 745 78 HOH HOH . O 5 HOH B 46 746 165 HOH HOH . O 5 HOH B 47 747 142 HOH HOH . O 5 HOH B 48 748 277 HOH HOH . O 5 HOH B 49 749 540 HOH HOH . O 5 HOH B 50 750 619 HOH HOH . O 5 HOH B 51 751 101 HOH HOH . O 5 HOH B 52 752 64 HOH HOH . O 5 HOH B 53 753 13 HOH HOH . O 5 HOH B 54 754 440 HOH HOH . O 5 HOH B 55 755 677 HOH HOH . O 5 HOH B 56 756 197 HOH HOH . O 5 HOH B 57 757 269 HOH HOH . O 5 HOH B 58 758 426 HOH HOH . O 5 HOH B 59 759 83 HOH HOH . O 5 HOH B 60 760 77 HOH HOH . O 5 HOH B 61 761 257 HOH HOH . O 5 HOH B 62 762 663 HOH HOH . O 5 HOH B 63 763 629 HOH HOH . O 5 HOH B 64 764 145 HOH HOH . O 5 HOH B 65 765 516 HOH HOH . O 5 HOH B 66 766 291 HOH HOH . O 5 HOH B 67 767 616 HOH HOH . O 5 HOH B 68 768 574 HOH HOH . O 5 HOH B 69 769 287 HOH HOH . O 5 HOH B 70 770 453 HOH HOH . O 5 HOH B 71 771 369 HOH HOH . O 5 HOH B 72 772 478 HOH HOH . O 5 HOH B 73 773 267 HOH HOH . O 5 HOH B 74 774 476 HOH HOH . O 5 HOH B 75 775 176 HOH HOH . P 5 HOH C 1 701 636 HOH HOH . P 5 HOH C 2 702 685 HOH HOH . P 5 HOH C 3 703 683 HOH HOH . P 5 HOH C 4 704 681 HOH HOH . P 5 HOH C 5 705 352 HOH HOH . P 5 HOH C 6 706 15 HOH HOH . P 5 HOH C 7 707 347 HOH HOH . P 5 HOH C 8 708 635 HOH HOH . P 5 HOH C 9 709 126 HOH HOH . P 5 HOH C 10 710 645 HOH HOH . P 5 HOH C 11 711 206 HOH HOH . P 5 HOH C 12 712 195 HOH HOH . P 5 HOH C 13 713 671 HOH HOH . P 5 HOH C 14 714 44 HOH HOH . P 5 HOH C 15 715 673 HOH HOH . P 5 HOH C 16 716 656 HOH HOH . P 5 HOH C 17 717 676 HOH HOH . P 5 HOH C 18 718 425 HOH HOH . P 5 HOH C 19 719 355 HOH HOH . P 5 HOH C 20 720 468 HOH HOH . P 5 HOH C 21 721 684 HOH HOH . P 5 HOH C 22 722 263 HOH HOH . P 5 HOH C 23 723 38 HOH HOH . P 5 HOH C 24 724 135 HOH HOH . P 5 HOH C 25 725 675 HOH HOH . P 5 HOH C 26 726 395 HOH HOH . P 5 HOH C 27 727 542 HOH HOH . P 5 HOH C 28 728 594 HOH HOH . P 5 HOH C 29 729 19 HOH HOH . P 5 HOH C 30 730 58 HOH HOH . P 5 HOH C 31 731 190 HOH HOH . P 5 HOH C 32 732 33 HOH HOH . P 5 HOH C 33 733 682 HOH HOH . P 5 HOH C 34 734 655 HOH HOH . P 5 HOH C 35 735 290 HOH HOH . P 5 HOH C 36 736 133 HOH HOH . P 5 HOH C 37 737 112 HOH HOH . P 5 HOH C 38 738 25 HOH HOH . P 5 HOH C 39 739 419 HOH HOH . P 5 HOH C 40 740 55 HOH HOH . P 5 HOH C 41 741 40 HOH HOH . P 5 HOH C 42 742 184 HOH HOH . P 5 HOH C 43 743 657 HOH HOH . P 5 HOH C 44 744 134 HOH HOH . P 5 HOH C 45 745 89 HOH HOH . P 5 HOH C 46 746 123 HOH HOH . P 5 HOH C 47 747 140 HOH HOH . P 5 HOH C 48 748 205 HOH HOH . P 5 HOH C 49 749 664 HOH HOH . P 5 HOH C 50 750 35 HOH HOH . P 5 HOH C 51 751 458 HOH HOH . P 5 HOH C 52 752 141 HOH HOH . P 5 HOH C 53 753 118 HOH HOH . P 5 HOH C 54 754 32 HOH HOH . P 5 HOH C 55 755 364 HOH HOH . P 5 HOH C 56 756 368 HOH HOH . P 5 HOH C 57 757 57 HOH HOH . P 5 HOH C 58 758 523 HOH HOH . P 5 HOH C 59 759 153 HOH HOH . P 5 HOH C 60 760 634 HOH HOH . P 5 HOH C 61 761 16 HOH HOH . P 5 HOH C 62 762 399 HOH HOH . P 5 HOH C 63 763 366 HOH HOH . P 5 HOH C 64 764 37 HOH HOH . P 5 HOH C 65 765 129 HOH HOH . P 5 HOH C 66 766 335 HOH HOH . P 5 HOH C 67 767 191 HOH HOH . P 5 HOH C 68 768 90 HOH HOH . P 5 HOH C 69 769 232 HOH HOH . P 5 HOH C 70 770 342 HOH HOH . P 5 HOH C 71 771 39 HOH HOH . P 5 HOH C 72 772 160 HOH HOH . P 5 HOH C 73 773 21 HOH HOH . P 5 HOH C 74 774 171 HOH HOH . P 5 HOH C 75 775 154 HOH HOH . P 5 HOH C 76 776 444 HOH HOH . P 5 HOH C 77 777 103 HOH HOH . P 5 HOH C 78 778 104 HOH HOH . P 5 HOH C 79 779 551 HOH HOH . P 5 HOH C 80 780 284 HOH HOH . P 5 HOH C 81 781 244 HOH HOH . P 5 HOH C 82 782 248 HOH HOH . P 5 HOH C 83 783 472 HOH HOH . P 5 HOH C 84 784 316 HOH HOH . P 5 HOH C 85 785 617 HOH HOH . P 5 HOH C 86 786 651 HOH HOH . P 5 HOH C 87 787 54 HOH HOH . P 5 HOH C 88 788 226 HOH HOH . P 5 HOH C 89 789 82 HOH HOH . P 5 HOH C 90 790 650 HOH HOH . P 5 HOH C 91 791 447 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 122.622 82.424 3.188 1 58.87 ? C1 EDO 602 A 1 HETATM 2 O O1 EDO . . . E 3 121.355 81.792 3.057 1 59.12 ? O1 EDO 602 A 1 HETATM 3 C C2 EDO . . . E 3 123.598 81.541 4.005 1 58.2 ? C2 EDO 602 A 1 HETATM 4 O O2 EDO . . . E 3 124.951 81.916 3.784 1 57.11 ? O2 EDO 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #