data_6BFV
#
_model_server_result.job_id            tkqzmQJys3JBDoinJqp_8w 
_model_server_result.datetime_utc      '2024-10-19 20:18:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bfv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6BFV 
#
_exptl.entry_id    6BFV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BFV 
_cell.length_a            98.64 
_cell.length_b            98.64 
_cell.length_c            98.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BFV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.32 49.32 98.64 
3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.32 98.64 49.32 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 115 n n 
S C1 DMS sing 116 n n 
S C2 DMS sing 117 n n 
C1 H11 DMS sing 118 n n 
C1 H12 DMS sing 119 n n 
C1 H13 DMS sing 120 n n 
C2 H21 DMS sing 121 n n 
C2 H22 DMS sing 122 n n 
C2 H23 DMS sing 123 n n 
#
_atom_sites.entry_id                     6BFV 
_atom_sites.fract_transf_matrix[1][1]    0.010138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010138 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010138 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 301 1 DMS DMS . 
C 2 DMS A 1 302 2 DMS DMS . 
D 2 DMS A 1 303 3 DMS DMS . 
E 2 DMS A 1 304 4 DMS DMS . 
F 2 DMS A 1 305 7 DMS DMS . 
G 3 DJP A 1 306 1 DJP FRG . 
H 4 HOH A 1 401 40 HOH HOH . 
H 4 HOH A 2 402 52 HOH HOH . 
H 4 HOH A 3 403 115 HOH HOH . 
H 4 HOH A 4 404 51 HOH HOH . 
H 4 HOH A 5 405 114 HOH HOH . 
H 4 HOH A 6 406 105 HOH HOH . 
H 4 HOH A 7 407 11 HOH HOH . 
H 4 HOH A 8 408 46 HOH HOH . 
H 4 HOH A 9 409 131 HOH HOH . 
H 4 HOH A 10 410 132 HOH HOH . 
H 4 HOH A 11 411 79 HOH HOH . 
H 4 HOH A 12 412 47 HOH HOH . 
H 4 HOH A 13 413 116 HOH HOH . 
H 4 HOH A 14 414 20 HOH HOH . 
H 4 HOH A 15 415 54 HOH HOH . 
H 4 HOH A 16 416 74 HOH HOH . 
H 4 HOH A 17 417 24 HOH HOH . 
H 4 HOH A 18 418 39 HOH HOH . 
H 4 HOH A 19 419 6 HOH HOH . 
H 4 HOH A 20 420 75 HOH HOH . 
H 4 HOH A 21 421 17 HOH HOH . 
H 4 HOH A 22 422 71 HOH HOH . 
H 4 HOH A 23 423 2 HOH HOH . 
H 4 HOH A 24 424 41 HOH HOH . 
H 4 HOH A 25 425 26 HOH HOH . 
H 4 HOH A 26 426 27 HOH HOH . 
H 4 HOH A 27 427 28 HOH HOH . 
H 4 HOH A 28 428 4 HOH HOH . 
H 4 HOH A 29 429 25 HOH HOH . 
H 4 HOH A 30 430 1 HOH HOH . 
H 4 HOH A 31 431 113 HOH HOH . 
H 4 HOH A 32 432 5 HOH HOH . 
H 4 HOH A 33 433 76 HOH HOH . 
H 4 HOH A 34 434 36 HOH HOH . 
H 4 HOH A 35 435 50 HOH HOH . 
H 4 HOH A 36 436 42 HOH HOH . 
H 4 HOH A 37 437 32 HOH HOH . 
H 4 HOH A 38 438 128 HOH HOH . 
H 4 HOH A 39 439 14 HOH HOH . 
H 4 HOH A 40 440 78 HOH HOH . 
H 4 HOH A 41 441 23 HOH HOH . 
H 4 HOH A 42 442 3 HOH HOH . 
H 4 HOH A 43 443 58 HOH HOH . 
H 4 HOH A 44 444 87 HOH HOH . 
H 4 HOH A 45 445 82 HOH HOH . 
H 4 HOH A 46 446 19 HOH HOH . 
H 4 HOH A 47 447 62 HOH HOH . 
H 4 HOH A 48 448 21 HOH HOH . 
H 4 HOH A 49 449 13 HOH HOH . 
H 4 HOH A 50 450 80 HOH HOH . 
H 4 HOH A 51 451 7 HOH HOH . 
H 4 HOH A 52 452 61 HOH HOH . 
H 4 HOH A 53 453 38 HOH HOH . 
H 4 HOH A 54 454 8 HOH HOH . 
H 4 HOH A 55 455 16 HOH HOH . 
H 4 HOH A 56 456 29 HOH HOH . 
H 4 HOH A 57 457 44 HOH HOH . 
H 4 HOH A 58 458 10 HOH HOH . 
H 4 HOH A 59 459 68 HOH HOH . 
H 4 HOH A 60 460 111 HOH HOH . 
H 4 HOH A 61 461 22 HOH HOH . 
H 4 HOH A 62 462 143 HOH HOH . 
H 4 HOH A 63 463 72 HOH HOH . 
H 4 HOH A 64 464 43 HOH HOH . 
H 4 HOH A 65 465 34 HOH HOH . 
H 4 HOH A 66 466 63 HOH HOH . 
H 4 HOH A 67 467 9 HOH HOH . 
H 4 HOH A 68 468 12 HOH HOH . 
H 4 HOH A 69 469 85 HOH HOH . 
H 4 HOH A 70 470 35 HOH HOH . 
H 4 HOH A 71 471 45 HOH HOH . 
H 4 HOH A 72 472 134 HOH HOH . 
H 4 HOH A 73 473 127 HOH HOH . 
H 4 HOH A 74 474 18 HOH HOH . 
H 4 HOH A 75 475 56 HOH HOH . 
H 4 HOH A 76 476 108 HOH HOH . 
H 4 HOH A 77 477 124 HOH HOH . 
H 4 HOH A 78 478 117 HOH HOH . 
H 4 HOH A 79 479 37 HOH HOH . 
H 4 HOH A 80 480 90 HOH HOH . 
H 4 HOH A 81 481 107 HOH HOH . 
H 4 HOH A 82 482 57 HOH HOH . 
H 4 HOH A 83 483 141 HOH HOH . 
H 4 HOH A 84 484 84 HOH HOH . 
H 4 HOH A 85 485 96 HOH HOH . 
H 4 HOH A 86 486 73 HOH HOH . 
H 4 HOH A 87 487 137 HOH HOH . 
H 4 HOH A 88 488 15 HOH HOH . 
H 4 HOH A 89 489 112 HOH HOH . 
H 4 HOH A 90 490 88 HOH HOH . 
H 4 HOH A 91 491 119 HOH HOH . 
H 4 HOH A 92 492 144 HOH HOH . 
H 4 HOH A 93 493 31 HOH HOH . 
H 4 HOH A 94 494 93 HOH HOH . 
H 4 HOH A 95 495 106 HOH HOH . 
H 4 HOH A 96 496 140 HOH HOH . 
H 4 HOH A 97 497 145 HOH HOH . 
H 4 HOH A 98 498 94 HOH HOH . 
H 4 HOH A 99 499 139 HOH HOH . 
H 4 HOH A 100 500 109 HOH HOH . 
H 4 HOH A 101 501 30 HOH HOH . 
H 4 HOH A 102 502 98 HOH HOH . 
H 4 HOH A 103 503 135 HOH HOH . 
H 4 HOH A 104 504 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . C 2 19.363 17.522 33.138 1 62.54 ? S DMS 302 A 1 
HETATM 2 O O DMS . . . C 2 18.502 18.301 32.181 1 62.88 ? O DMS 302 A 1 
HETATM 3 C C1 DMS . . . C 2 18.344 16.15 33.769 1 60.96 ? C1 DMS 302 A 1 
HETATM 4 C C2 DMS . . . C 2 20.656 16.563 32.287 1 63.77 ? C2 DMS 302 A 1 
HETATM 5 H H11 DMS . . . C 2 17.962 15.59 32.955 1 73.15 ? H11 DMS 302 A 1 
HETATM 6 H H12 DMS . . . C 2 17.54 16.54 34.338 1 73.15 ? H12 DMS 302 A 1 
HETATM 7 H H13 DMS . . . C 2 18.938 15.522 34.381 1 73.15 ? H13 DMS 302 A 1 
HETATM 8 H H21 DMS . . . C 2 20.209 15.938 31.558 1 76.53 ? H21 DMS 302 A 1 
HETATM 9 H H22 DMS . . . C 2 21.334 17.225 31.816 1 76.53 ? H22 DMS 302 A 1 
HETATM 10 H H23 DMS . . . C 2 21.175 15.968 32.992 1 76.53 ? H23 DMS 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#