data_6BG1 # _model_server_result.job_id bbqFsebf9T7T2XFwnHulwA _model_server_result.datetime_utc '2024-11-22 08:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6BG1 # _exptl.entry_id 6BG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BG1 _cell.length_a 68.428 _cell.length_b 84.476 _cell.length_c 96.423 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 163 A CYS 163 1_555 C C ASP 5 B ASP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? covale ? covale2 C C ACE 1 B ACE 1 1_555 C N ASP 2 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale3 C C ASP 5 B ASP 5 1_555 C C1 0QE 6 B 0QE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? metalc ? metalc1 A OE1 GLN 161 A GLN 161 1_555 D NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc2 D NA NA . A NA 301 1_555 B O TRP 31 C TRP 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BG1 _atom_sites.fract_transf_matrix[1][1] 0.014614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 301 1 NA NA . E 5 HOH A 1 401 194 HOH HOH . E 5 HOH A 2 402 143 HOH HOH . E 5 HOH A 3 403 147 HOH HOH . E 5 HOH A 4 404 57 HOH HOH . E 5 HOH A 5 405 144 HOH HOH . E 5 HOH A 6 406 59 HOH HOH . E 5 HOH A 7 407 41 HOH HOH . E 5 HOH A 8 408 115 HOH HOH . E 5 HOH A 9 409 61 HOH HOH . E 5 HOH A 10 410 32 HOH HOH . E 5 HOH A 11 411 157 HOH HOH . E 5 HOH A 12 412 161 HOH HOH . E 5 HOH A 13 413 19 HOH HOH . E 5 HOH A 14 414 158 HOH HOH . E 5 HOH A 15 415 179 HOH HOH . E 5 HOH A 16 416 112 HOH HOH . E 5 HOH A 17 417 127 HOH HOH . E 5 HOH A 18 418 36 HOH HOH . E 5 HOH A 19 419 110 HOH HOH . E 5 HOH A 20 420 18 HOH HOH . E 5 HOH A 21 421 149 HOH HOH . E 5 HOH A 22 422 187 HOH HOH . E 5 HOH A 23 423 133 HOH HOH . E 5 HOH A 24 424 131 HOH HOH . E 5 HOH A 25 425 165 HOH HOH . E 5 HOH A 26 426 148 HOH HOH . E 5 HOH A 27 427 94 HOH HOH . E 5 HOH A 28 428 40 HOH HOH . E 5 HOH A 29 429 203 HOH HOH . E 5 HOH A 30 430 113 HOH HOH . E 5 HOH A 31 431 71 HOH HOH . E 5 HOH A 32 432 175 HOH HOH . E 5 HOH A 33 433 44 HOH HOH . E 5 HOH A 34 434 160 HOH HOH . E 5 HOH A 35 435 8 HOH HOH . E 5 HOH A 36 436 69 HOH HOH . E 5 HOH A 37 437 99 HOH HOH . E 5 HOH A 38 438 4 HOH HOH . E 5 HOH A 39 439 152 HOH HOH . E 5 HOH A 40 440 167 HOH HOH . E 5 HOH A 41 441 163 HOH HOH . E 5 HOH A 42 442 114 HOH HOH . E 5 HOH A 43 443 6 HOH HOH . E 5 HOH A 44 444 172 HOH HOH . E 5 HOH A 45 445 5 HOH HOH . E 5 HOH A 46 446 53 HOH HOH . E 5 HOH A 47 447 80 HOH HOH . E 5 HOH A 48 448 3 HOH HOH . E 5 HOH A 49 449 58 HOH HOH . E 5 HOH A 50 450 72 HOH HOH . E 5 HOH A 51 451 124 HOH HOH . E 5 HOH A 52 452 190 HOH HOH . E 5 HOH A 53 453 28 HOH HOH . E 5 HOH A 54 454 65 HOH HOH . E 5 HOH A 55 455 84 HOH HOH . E 5 HOH A 56 456 48 HOH HOH . E 5 HOH A 57 457 116 HOH HOH . E 5 HOH A 58 458 109 HOH HOH . E 5 HOH A 59 459 159 HOH HOH . E 5 HOH A 60 460 108 HOH HOH . E 5 HOH A 61 461 177 HOH HOH . E 5 HOH A 62 462 66 HOH HOH . E 5 HOH A 63 463 173 HOH HOH . E 5 HOH A 64 464 145 HOH HOH . E 5 HOH A 65 465 30 HOH HOH . E 5 HOH A 66 466 73 HOH HOH . E 5 HOH A 67 467 33 HOH HOH . E 5 HOH A 68 468 79 HOH HOH . E 5 HOH A 69 469 67 HOH HOH . E 5 HOH A 70 470 88 HOH HOH . E 5 HOH A 71 471 50 HOH HOH . E 5 HOH A 72 472 105 HOH HOH . E 5 HOH A 73 473 142 HOH HOH . E 5 HOH A 74 474 9 HOH HOH . E 5 HOH A 75 475 191 HOH HOH . E 5 HOH A 76 476 56 HOH HOH . E 5 HOH A 77 477 107 HOH HOH . E 5 HOH A 78 478 111 HOH HOH . E 5 HOH A 79 479 164 HOH HOH . E 5 HOH A 80 480 78 HOH HOH . E 5 HOH A 81 481 86 HOH HOH . E 5 HOH A 82 482 16 HOH HOH . E 5 HOH A 83 483 162 HOH HOH . E 5 HOH A 84 484 104 HOH HOH . E 5 HOH A 85 485 39 HOH HOH . E 5 HOH A 86 486 183 HOH HOH . E 5 HOH A 87 487 93 HOH HOH . E 5 HOH A 88 488 2 HOH HOH . E 5 HOH A 89 489 82 HOH HOH . E 5 HOH A 90 490 97 HOH HOH . E 5 HOH A 91 491 122 HOH HOH . E 5 HOH A 92 492 98 HOH HOH . E 5 HOH A 93 493 35 HOH HOH . E 5 HOH A 94 494 51 HOH HOH . E 5 HOH A 95 495 189 HOH HOH . E 5 HOH A 96 496 135 HOH HOH . E 5 HOH A 97 497 201 HOH HOH . E 5 HOH A 98 498 123 HOH HOH . E 5 HOH A 99 499 23 HOH HOH . E 5 HOH A 100 500 188 HOH HOH . E 5 HOH A 101 501 43 HOH HOH . E 5 HOH A 102 502 196 HOH HOH . E 5 HOH A 103 503 171 HOH HOH . E 5 HOH A 104 504 155 HOH HOH . E 5 HOH A 105 505 130 HOH HOH . E 5 HOH A 106 506 197 HOH HOH . E 5 HOH A 107 507 134 HOH HOH . E 5 HOH A 108 508 198 HOH HOH . E 5 HOH A 109 509 199 HOH HOH . E 5 HOH A 110 510 176 HOH HOH . E 5 HOH A 111 511 1 HOH HOH . E 5 HOH A 112 512 154 HOH HOH . E 5 HOH A 113 513 117 HOH HOH . E 5 HOH A 114 514 195 HOH HOH . E 5 HOH A 115 515 200 HOH HOH . E 5 HOH A 116 516 81 HOH HOH . E 5 HOH A 117 517 27 HOH HOH . E 5 HOH A 118 518 68 HOH HOH . E 5 HOH A 119 519 37 HOH HOH . E 5 HOH A 120 520 129 HOH HOH . E 5 HOH A 121 521 178 HOH HOH . E 5 HOH A 122 522 52 HOH HOH . E 5 HOH A 123 523 26 HOH HOH . E 5 HOH A 124 524 54 HOH HOH . F 5 HOH C 1 301 100 HOH HOH . F 5 HOH C 2 302 60 HOH HOH . F 5 HOH C 3 303 64 HOH HOH . F 5 HOH C 4 304 17 HOH HOH . F 5 HOH C 5 305 89 HOH HOH . F 5 HOH C 6 306 192 HOH HOH . F 5 HOH C 7 307 77 HOH HOH . F 5 HOH C 8 308 14 HOH HOH . F 5 HOH C 9 309 185 HOH HOH . F 5 HOH C 10 310 62 HOH HOH . F 5 HOH C 11 311 12 HOH HOH . F 5 HOH C 12 312 22 HOH HOH . F 5 HOH C 13 313 21 HOH HOH . F 5 HOH C 14 314 74 HOH HOH . F 5 HOH C 15 315 38 HOH HOH . F 5 HOH C 16 316 137 HOH HOH . F 5 HOH C 17 317 166 HOH HOH . F 5 HOH C 18 318 24 HOH HOH . F 5 HOH C 19 319 128 HOH HOH . F 5 HOH C 20 320 25 HOH HOH . F 5 HOH C 21 321 141 HOH HOH . F 5 HOH C 22 322 34 HOH HOH . F 5 HOH C 23 323 202 HOH HOH . F 5 HOH C 24 324 7 HOH HOH . F 5 HOH C 25 325 136 HOH HOH . F 5 HOH C 26 326 118 HOH HOH . F 5 HOH C 27 327 13 HOH HOH . F 5 HOH C 28 328 101 HOH HOH . F 5 HOH C 29 329 121 HOH HOH . F 5 HOH C 30 330 103 HOH HOH . F 5 HOH C 31 331 83 HOH HOH . F 5 HOH C 32 332 29 HOH HOH . F 5 HOH C 33 333 95 HOH HOH . F 5 HOH C 34 334 76 HOH HOH . F 5 HOH C 35 335 102 HOH HOH . F 5 HOH C 36 336 120 HOH HOH . F 5 HOH C 37 337 15 HOH HOH . F 5 HOH C 38 338 10 HOH HOH . F 5 HOH C 39 339 125 HOH HOH . F 5 HOH C 40 340 63 HOH HOH . F 5 HOH C 41 341 90 HOH HOH . F 5 HOH C 42 342 31 HOH HOH . F 5 HOH C 43 343 47 HOH HOH . F 5 HOH C 44 344 91 HOH HOH . F 5 HOH C 45 345 96 HOH HOH . F 5 HOH C 46 346 87 HOH HOH . F 5 HOH C 47 347 45 HOH HOH . F 5 HOH C 48 348 92 HOH HOH . F 5 HOH C 49 349 42 HOH HOH . F 5 HOH C 50 350 138 HOH HOH . F 5 HOH C 51 351 181 HOH HOH . F 5 HOH C 52 352 119 HOH HOH . F 5 HOH C 53 353 180 HOH HOH . F 5 HOH C 54 354 11 HOH HOH . F 5 HOH C 55 355 186 HOH HOH . F 5 HOH C 56 356 85 HOH HOH . F 5 HOH C 57 357 70 HOH HOH . F 5 HOH C 58 358 20 HOH HOH . F 5 HOH C 59 359 139 HOH HOH . F 5 HOH C 60 360 169 HOH HOH . F 5 HOH C 61 361 193 HOH HOH . F 5 HOH C 62 362 132 HOH HOH . F 5 HOH C 63 363 168 HOH HOH . F 5 HOH C 64 364 140 HOH HOH . F 5 HOH C 65 365 106 HOH HOH . F 5 HOH C 66 366 49 HOH HOH . F 5 HOH C 67 367 170 HOH HOH . F 5 HOH C 68 368 75 HOH HOH . F 5 HOH C 69 369 182 HOH HOH . F 5 HOH C 70 370 46 HOH HOH . G 5 HOH B 1 101 174 HOH HOH . G 5 HOH B 2 102 156 HOH HOH . G 5 HOH B 3 103 153 HOH HOH . G 5 HOH B 4 104 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 36.797 _atom_site.Cartn_y 101.556 _atom_site.Cartn_z 112.687 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #