data_6BGC # _model_server_result.job_id cI57b3Me5cxa07Ic4Hic1Q _model_server_result.datetime_utc '2025-03-13 17:43:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 6BGC # _exptl.entry_id 6BGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 80.22 _cell.angle_beta 77.58 _cell.angle_gamma 72.72 _cell.entry_id 6BGC _cell.length_a 42.257 _cell.length_b 61.592 _cell.length_c 70.35 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 80 A ASP 71 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A OD1 ASN 82 A ASN 73 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A OD1 ASP 84 A ASP 75 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc4 A O ILE 86 A ILE 77 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 A OD2 ASP 175 A ASP 166 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc6 D CA CA . A CA 402 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc7 D CA CA . A CA 402 1_555 I O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 B OD1 ASP 80 B ASP 71 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc9 B OD1 ASN 82 B ASN 73 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc10 B OD1 ASP 84 B ASP 75 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc11 B O ILE 86 B ILE 77 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 B OD2 ASP 175 B ASP 166 1_555 G CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc13 G CA CA . B CA 402 1_555 J O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc14 G CA CA . B CA 402 1_555 J O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BGC _atom_sites.fract_transf_matrix[1][1] 0.023665 _atom_sites.fract_transf_matrix[1][2] -0.007362 _atom_sites.fract_transf_matrix[1][3] -0.004401 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017003 _atom_sites.fract_transf_matrix[2][3] -0.001947 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BGC A 1 401 970 BGC BGC . D 3 CA A 1 402 501 CA CA . E 4 EDO A 1 403 3318 EDO EDO . F 2 BGC B 1 401 970 BGC BGC . G 3 CA B 1 402 502 CA CA . H 4 EDO B 1 403 3318 EDO EDO . I 5 HOH A 1 501 64 HOH HOH . I 5 HOH A 2 502 146 HOH HOH . I 5 HOH A 3 503 46 HOH HOH . I 5 HOH A 4 504 162 HOH HOH . I 5 HOH A 5 505 149 HOH HOH . I 5 HOH A 6 506 126 HOH HOH . I 5 HOH A 7 507 118 HOH HOH . I 5 HOH A 8 508 107 HOH HOH . I 5 HOH A 9 509 93 HOH HOH . I 5 HOH A 10 510 54 HOH HOH . I 5 HOH A 11 511 99 HOH HOH . I 5 HOH A 12 512 1 HOH HOH . I 5 HOH A 13 513 159 HOH HOH . I 5 HOH A 14 514 16 HOH HOH . I 5 HOH A 15 515 55 HOH HOH . I 5 HOH A 16 516 192 HOH HOH . I 5 HOH A 17 517 13 HOH HOH . I 5 HOH A 18 518 166 HOH HOH . I 5 HOH A 19 519 172 HOH HOH . I 5 HOH A 20 520 89 HOH HOH . I 5 HOH A 21 521 171 HOH HOH . I 5 HOH A 22 522 3 HOH HOH . I 5 HOH A 23 523 209 HOH HOH . I 5 HOH A 24 524 131 HOH HOH . I 5 HOH A 25 525 130 HOH HOH . I 5 HOH A 26 526 132 HOH HOH . I 5 HOH A 27 527 201 HOH HOH . I 5 HOH A 28 528 167 HOH HOH . I 5 HOH A 29 529 143 HOH HOH . I 5 HOH A 30 530 4 HOH HOH . I 5 HOH A 31 531 155 HOH HOH . I 5 HOH A 32 532 136 HOH HOH . I 5 HOH A 33 533 108 HOH HOH . I 5 HOH A 34 534 75 HOH HOH . I 5 HOH A 35 535 106 HOH HOH . I 5 HOH A 36 536 174 HOH HOH . I 5 HOH A 37 537 87 HOH HOH . I 5 HOH A 38 538 190 HOH HOH . I 5 HOH A 39 539 76 HOH HOH . I 5 HOH A 40 540 74 HOH HOH . I 5 HOH A 41 541 15 HOH HOH . I 5 HOH A 42 542 134 HOH HOH . I 5 HOH A 43 543 72 HOH HOH . I 5 HOH A 44 544 12 HOH HOH . I 5 HOH A 45 545 111 HOH HOH . I 5 HOH A 46 546 2 HOH HOH . I 5 HOH A 47 547 81 HOH HOH . I 5 HOH A 48 548 83 HOH HOH . I 5 HOH A 49 549 211 HOH HOH . I 5 HOH A 50 550 140 HOH HOH . I 5 HOH A 51 551 84 HOH HOH . I 5 HOH A 52 552 56 HOH HOH . I 5 HOH A 53 553 189 HOH HOH . I 5 HOH A 54 554 123 HOH HOH . I 5 HOH A 55 555 142 HOH HOH . I 5 HOH A 56 556 80 HOH HOH . I 5 HOH A 57 557 144 HOH HOH . I 5 HOH A 58 558 91 HOH HOH . I 5 HOH A 59 559 50 HOH HOH . I 5 HOH A 60 560 186 HOH HOH . I 5 HOH A 61 561 69 HOH HOH . I 5 HOH A 62 562 17 HOH HOH . I 5 HOH A 63 563 152 HOH HOH . I 5 HOH A 64 564 79 HOH HOH . I 5 HOH A 65 565 57 HOH HOH . I 5 HOH A 66 566 59 HOH HOH . I 5 HOH A 67 567 176 HOH HOH . I 5 HOH A 68 568 45 HOH HOH . I 5 HOH A 69 569 137 HOH HOH . I 5 HOH A 70 570 78 HOH HOH . I 5 HOH A 71 571 14 HOH HOH . I 5 HOH A 72 572 188 HOH HOH . I 5 HOH A 73 573 184 HOH HOH . I 5 HOH A 74 574 210 HOH HOH . I 5 HOH A 75 575 98 HOH HOH . I 5 HOH A 76 576 208 HOH HOH . I 5 HOH A 77 577 157 HOH HOH . I 5 HOH A 78 578 86 HOH HOH . I 5 HOH A 79 579 109 HOH HOH . I 5 HOH A 80 580 196 HOH HOH . I 5 HOH A 81 581 120 HOH HOH . I 5 HOH A 82 582 122 HOH HOH . I 5 HOH A 83 583 110 HOH HOH . I 5 HOH A 84 584 206 HOH HOH . I 5 HOH A 85 585 163 HOH HOH . I 5 HOH A 86 586 207 HOH HOH . I 5 HOH A 87 587 212 HOH HOH . I 5 HOH A 88 588 204 HOH HOH . I 5 HOH A 89 589 170 HOH HOH . I 5 HOH A 90 590 213 HOH HOH . I 5 HOH A 91 591 187 HOH HOH . I 5 HOH A 92 592 202 HOH HOH . I 5 HOH A 93 593 182 HOH HOH . I 5 HOH A 94 594 153 HOH HOH . J 5 HOH B 1 501 114 HOH HOH . J 5 HOH B 2 502 138 HOH HOH . J 5 HOH B 3 503 158 HOH HOH . J 5 HOH B 4 504 154 HOH HOH . J 5 HOH B 5 505 104 HOH HOH . J 5 HOH B 6 506 9 HOH HOH . J 5 HOH B 7 507 73 HOH HOH . J 5 HOH B 8 508 100 HOH HOH . J 5 HOH B 9 509 21 HOH HOH . J 5 HOH B 10 510 23 HOH HOH . J 5 HOH B 11 511 35 HOH HOH . J 5 HOH B 12 512 177 HOH HOH . J 5 HOH B 13 513 24 HOH HOH . J 5 HOH B 14 514 49 HOH HOH . J 5 HOH B 15 515 27 HOH HOH . J 5 HOH B 16 516 48 HOH HOH . J 5 HOH B 17 517 62 HOH HOH . J 5 HOH B 18 518 42 HOH HOH . J 5 HOH B 19 519 40 HOH HOH . J 5 HOH B 20 520 22 HOH HOH . J 5 HOH B 21 521 195 HOH HOH . J 5 HOH B 22 522 58 HOH HOH . J 5 HOH B 23 523 60 HOH HOH . J 5 HOH B 24 524 20 HOH HOH . J 5 HOH B 25 525 82 HOH HOH . J 5 HOH B 26 526 18 HOH HOH . J 5 HOH B 27 527 147 HOH HOH . J 5 HOH B 28 528 145 HOH HOH . J 5 HOH B 29 529 95 HOH HOH . J 5 HOH B 30 530 68 HOH HOH . J 5 HOH B 31 531 11 HOH HOH . J 5 HOH B 32 532 77 HOH HOH . J 5 HOH B 33 533 128 HOH HOH . J 5 HOH B 34 534 214 HOH HOH . J 5 HOH B 35 535 29 HOH HOH . J 5 HOH B 36 536 181 HOH HOH . J 5 HOH B 37 537 116 HOH HOH . J 5 HOH B 38 538 127 HOH HOH . J 5 HOH B 39 539 8 HOH HOH . J 5 HOH B 40 540 151 HOH HOH . J 5 HOH B 41 541 117 HOH HOH . J 5 HOH B 42 542 129 HOH HOH . J 5 HOH B 43 543 164 HOH HOH . J 5 HOH B 44 544 94 HOH HOH . J 5 HOH B 45 545 26 HOH HOH . J 5 HOH B 46 546 150 HOH HOH . J 5 HOH B 47 547 37 HOH HOH . J 5 HOH B 48 548 53 HOH HOH . J 5 HOH B 49 549 41 HOH HOH . J 5 HOH B 50 550 112 HOH HOH . J 5 HOH B 51 551 124 HOH HOH . J 5 HOH B 52 552 67 HOH HOH . J 5 HOH B 53 553 71 HOH HOH . J 5 HOH B 54 554 44 HOH HOH . J 5 HOH B 55 555 66 HOH HOH . J 5 HOH B 56 556 97 HOH HOH . J 5 HOH B 57 557 51 HOH HOH . J 5 HOH B 58 558 179 HOH HOH . J 5 HOH B 59 559 156 HOH HOH . J 5 HOH B 60 560 28 HOH HOH . J 5 HOH B 61 561 169 HOH HOH . J 5 HOH B 62 562 10 HOH HOH . J 5 HOH B 63 563 36 HOH HOH . J 5 HOH B 64 564 183 HOH HOH . J 5 HOH B 65 565 185 HOH HOH . J 5 HOH B 66 566 19 HOH HOH . J 5 HOH B 67 567 92 HOH HOH . J 5 HOH B 68 568 85 HOH HOH . J 5 HOH B 69 569 30 HOH HOH . J 5 HOH B 70 570 5 HOH HOH . J 5 HOH B 71 571 32 HOH HOH . J 5 HOH B 72 572 139 HOH HOH . J 5 HOH B 73 573 197 HOH HOH . J 5 HOH B 74 574 191 HOH HOH . J 5 HOH B 75 575 6 HOH HOH . J 5 HOH B 76 576 175 HOH HOH . J 5 HOH B 77 577 102 HOH HOH . J 5 HOH B 78 578 38 HOH HOH . J 5 HOH B 79 579 165 HOH HOH . J 5 HOH B 80 580 133 HOH HOH . J 5 HOH B 81 581 7 HOH HOH . J 5 HOH B 82 582 39 HOH HOH . J 5 HOH B 83 583 113 HOH HOH . J 5 HOH B 84 584 70 HOH HOH . J 5 HOH B 85 585 193 HOH HOH . J 5 HOH B 86 586 148 HOH HOH . J 5 HOH B 87 587 216 HOH HOH . J 5 HOH B 88 588 101 HOH HOH . J 5 HOH B 89 589 47 HOH HOH . J 5 HOH B 90 590 173 HOH HOH . J 5 HOH B 91 591 43 HOH HOH . J 5 HOH B 92 592 65 HOH HOH . J 5 HOH B 93 593 115 HOH HOH . J 5 HOH B 94 594 31 HOH HOH . J 5 HOH B 95 595 52 HOH HOH . J 5 HOH B 96 596 121 HOH HOH . J 5 HOH B 97 597 103 HOH HOH . J 5 HOH B 98 598 160 HOH HOH . J 5 HOH B 99 599 178 HOH HOH . J 5 HOH B 100 600 25 HOH HOH . J 5 HOH B 101 601 88 HOH HOH . J 5 HOH B 102 602 90 HOH HOH . J 5 HOH B 103 603 198 HOH HOH . J 5 HOH B 104 604 203 HOH HOH . J 5 HOH B 105 605 194 HOH HOH . J 5 HOH B 106 606 135 HOH HOH . J 5 HOH B 107 607 119 HOH HOH . J 5 HOH B 108 608 161 HOH HOH . J 5 HOH B 109 609 141 HOH HOH . J 5 HOH B 110 610 61 HOH HOH . J 5 HOH B 111 611 105 HOH HOH . J 5 HOH B 112 612 96 HOH HOH . J 5 HOH B 113 613 168 HOH HOH . J 5 HOH B 114 614 205 HOH HOH . J 5 HOH B 115 615 33 HOH HOH . J 5 HOH B 116 616 63 HOH HOH . J 5 HOH B 117 617 180 HOH HOH . J 5 HOH B 118 618 34 HOH HOH . J 5 HOH B 119 619 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.866 _atom_site.Cartn_y 78.431 _atom_site.Cartn_z -46.995 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #