data_6BGF
#
_model_server_result.job_id            45qk12gp98MYbVxcIicwjg 
_model_server_result.datetime_utc      '2024-11-16 08:29:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bgf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    6BGF 
#
_exptl.entry_id    6BGF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6BGF 
_cell.length_a            131.295 
_cell.length_b            131.295 
_cell.length_c            34.218 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BGF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc2 A NE2 HIS 88 A HIS 88 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 A NE2 HIS 140 A HIS 140 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 B N CYS . A CYS 301 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc5 B SG CYS . A CYS 301 1_555 C FE FE2 . A FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc6 C FE FE2 . A FE2 302 1_555 L O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6BGF 
_atom_sites.fract_transf_matrix[1][1]    0.007616 
_atom_sites.fract_transf_matrix[1][2]    0.004397 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008795 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029224 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CYS A 1 301 201 CYS CYS . 
C 3 FE2 A 1 302 301 FE2 FE2 . 
D 4 SO4 A 1 303 201 SO4 SO4 . 
E 4 SO4 A 1 304 202 SO4 SO4 . 
F 4 SO4 A 1 305 203 SO4 SO4 . 
G 5 GOL A 1 306 301 GOL GOL . 
H 5 GOL A 1 307 302 GOL GOL . 
I 5 GOL A 1 308 303 GOL GOL . 
J 5 GOL A 1 309 304 GOL GOL . 
K 5 GOL A 1 310 305 GOL GOL . 
L 6 HOH A 1 401 103 HOH HOH . 
L 6 HOH A 2 402 99 HOH HOH . 
L 6 HOH A 3 403 100 HOH HOH . 
L 6 HOH A 4 404 102 HOH HOH . 
L 6 HOH A 5 405 74 HOH HOH . 
L 6 HOH A 6 406 5 HOH HOH . 
L 6 HOH A 7 407 67 HOH HOH . 
L 6 HOH A 8 408 49 HOH HOH . 
L 6 HOH A 9 409 24 HOH HOH . 
L 6 HOH A 10 410 2 HOH HOH . 
L 6 HOH A 11 411 66 HOH HOH . 
L 6 HOH A 12 412 48 HOH HOH . 
L 6 HOH A 13 413 15 HOH HOH . 
L 6 HOH A 14 414 45 HOH HOH . 
L 6 HOH A 15 415 93 HOH HOH . 
L 6 HOH A 16 416 36 HOH HOH . 
L 6 HOH A 17 417 13 HOH HOH . 
L 6 HOH A 18 418 40 HOH HOH . 
L 6 HOH A 19 419 54 HOH HOH . 
L 6 HOH A 20 420 3 HOH HOH . 
L 6 HOH A 21 421 38 HOH HOH . 
L 6 HOH A 22 422 26 HOH HOH . 
L 6 HOH A 23 423 64 HOH HOH . 
L 6 HOH A 24 424 87 HOH HOH . 
L 6 HOH A 25 425 8 HOH HOH . 
L 6 HOH A 26 426 101 HOH HOH . 
L 6 HOH A 27 427 37 HOH HOH . 
L 6 HOH A 28 428 98 HOH HOH . 
L 6 HOH A 29 429 58 HOH HOH . 
L 6 HOH A 30 430 14 HOH HOH . 
L 6 HOH A 31 431 73 HOH HOH . 
L 6 HOH A 32 432 9 HOH HOH . 
L 6 HOH A 33 433 57 HOH HOH . 
L 6 HOH A 34 434 11 HOH HOH . 
L 6 HOH A 35 435 35 HOH HOH . 
L 6 HOH A 36 436 7 HOH HOH . 
L 6 HOH A 37 437 27 HOH HOH . 
L 6 HOH A 38 438 12 HOH HOH . 
L 6 HOH A 39 439 60 HOH HOH . 
L 6 HOH A 40 440 44 HOH HOH . 
L 6 HOH A 41 441 16 HOH HOH . 
L 6 HOH A 42 442 41 HOH HOH . 
L 6 HOH A 43 443 33 HOH HOH . 
L 6 HOH A 44 444 53 HOH HOH . 
L 6 HOH A 45 445 21 HOH HOH . 
L 6 HOH A 46 446 85 HOH HOH . 
L 6 HOH A 47 447 6 HOH HOH . 
L 6 HOH A 48 448 17 HOH HOH . 
L 6 HOH A 49 449 63 HOH HOH . 
L 6 HOH A 50 450 32 HOH HOH . 
L 6 HOH A 51 451 1 HOH HOH . 
L 6 HOH A 52 452 31 HOH HOH . 
L 6 HOH A 53 453 68 HOH HOH . 
L 6 HOH A 54 454 34 HOH HOH . 
L 6 HOH A 55 455 71 HOH HOH . 
L 6 HOH A 56 456 61 HOH HOH . 
L 6 HOH A 57 457 92 HOH HOH . 
L 6 HOH A 58 458 19 HOH HOH . 
L 6 HOH A 59 459 22 HOH HOH . 
L 6 HOH A 60 460 56 HOH HOH . 
L 6 HOH A 61 461 42 HOH HOH . 
L 6 HOH A 62 462 51 HOH HOH . 
L 6 HOH A 63 463 23 HOH HOH . 
L 6 HOH A 64 464 59 HOH HOH . 
L 6 HOH A 65 465 4 HOH HOH . 
L 6 HOH A 66 466 28 HOH HOH . 
L 6 HOH A 67 467 18 HOH HOH . 
L 6 HOH A 68 468 10 HOH HOH . 
L 6 HOH A 69 469 25 HOH HOH . 
L 6 HOH A 70 470 91 HOH HOH . 
L 6 HOH A 71 471 55 HOH HOH . 
L 6 HOH A 72 472 29 HOH HOH . 
L 6 HOH A 73 473 30 HOH HOH . 
L 6 HOH A 74 474 72 HOH HOH . 
L 6 HOH A 75 475 78 HOH HOH . 
L 6 HOH A 76 476 69 HOH HOH . 
L 6 HOH A 77 477 20 HOH HOH . 
L 6 HOH A 78 478 46 HOH HOH . 
L 6 HOH A 79 479 65 HOH HOH . 
L 6 HOH A 80 480 80 HOH HOH . 
L 6 HOH A 81 481 84 HOH HOH . 
L 6 HOH A 82 482 77 HOH HOH . 
L 6 HOH A 83 483 75 HOH HOH . 
L 6 HOH A 84 484 104 HOH HOH . 
L 6 HOH A 85 485 47 HOH HOH . 
L 6 HOH A 86 486 95 HOH HOH . 
L 6 HOH A 87 487 97 HOH HOH . 
L 6 HOH A 88 488 81 HOH HOH . 
L 6 HOH A 89 489 39 HOH HOH . 
L 6 HOH A 90 490 106 HOH HOH . 
L 6 HOH A 91 491 76 HOH HOH . 
L 6 HOH A 92 492 50 HOH HOH . 
L 6 HOH A 93 493 86 HOH HOH . 
L 6 HOH A 94 494 105 HOH HOH . 
L 6 HOH A 95 495 83 HOH HOH . 
L 6 HOH A 96 496 94 HOH HOH . 
L 6 HOH A 97 497 88 HOH HOH . 
L 6 HOH A 98 498 70 HOH HOH . 
L 6 HOH A 99 499 107 HOH HOH . 
L 6 HOH A 100 500 89 HOH HOH . 
L 6 HOH A 101 501 52 HOH HOH . 
L 6 HOH A 102 502 43 HOH HOH . 
L 6 HOH A 103 503 62 HOH HOH . 
L 6 HOH A 104 504 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 -43.437 12.757 45.159 1 66.61 ? C1 GOL 306 A 1 
HETATM 2 O O1 GOL . . . G 5 -43.817 12.844 46.514 1 71.02 ? O1 GOL 306 A 1 
HETATM 3 C C2 GOL . . . G 5 -43.499 14.198 44.547 1 72.09 ? C2 GOL 306 A 1 
HETATM 4 O O2 GOL . . . G 5 -44.067 15.148 45.417 1 75.18 ? O2 GOL 306 A 1 
HETATM 5 C C3 GOL . . . G 5 -42.036 14.539 44.116 1 68.58 ? C3 GOL 306 A 1 
HETATM 6 O O3 GOL . . . G 5 -41.874 14.062 42.798 1 73.74 ? O3 GOL 306 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#