data_6BGT
#
_model_server_result.job_id            O4qFdP4WqJVYn13WBf0Ygg 
_model_server_result.datetime_utc      '2024-11-25 16:03:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bgt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    6BGT 
#
_exptl.entry_id    6BGT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BGT 
_cell.length_a            62.86 
_cell.length_b            114.46 
_cell.length_c            204.279 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BGT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 C CYS 4 1_555 A SG CYS 53 C CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 162 C CYS 140 1_555 A SG CYS 192 C CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 195 C CYS 173 1_555 A SG CYS 204 C CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 199 C CYS 177 1_555 A SG CYS 212 C CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 220 C CYS 198 1_555 A SG CYS 227 C CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf6 A SG CYS 224 C CYS 202 1_555 A SG CYS 235 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 A SG CYS 236 C CYS 214 1_555 A SG CYS 244 C CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 A SG CYS 240 C CYS 218 1_555 A SG CYS 252 C CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 A SG CYS 255 C CYS 233 1_555 A SG CYS 264 C CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 A SG CYS 268 C CYS 246 1_555 A SG CYS 295 C CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf11 A SG CYS 299 C CYS 277 1_555 A SG CYS 311 C CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 A SG CYS 315 C CYS 293 1_555 A SG CYS 331 C CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 A SG CYS 334 C CYS 312 1_555 A SG CYS 338 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 A SG CYS 342 C CYS 320 1_555 A SG CYS 367 C CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 A SG CYS 475 C CYS 453 1_555 A SG CYS 504 C CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 A SG CYS 511 C CYS 489 1_555 A SG CYS 520 C CYS 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 A SG CYS 515 C CYS 493 1_555 A SG CYS 528 C CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf18 A SG CYS 531 C CYS 509 1_555 A SG CYS 540 C CYS 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf19 A SG CYS 544 C CYS 522 1_555 A SG CYS 560 C CYS 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf20 A SG CYS 563 C CYS 541 1_555 A SG CYS 576 C CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf21 A SG CYS 567 C CYS 545 1_555 A SG CYS 584 C CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf22 A SG CYS 587 C CYS 565 1_555 A SG CYS 596 C CYS 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf23 A SG CYS 600 C CYS 578 1_555 A SG CYS 623 C CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf24 B SG CYS 23 A CYS 23 1_555 B SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf25 B SG CYS 134 A CYS 134 1_555 B SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf26 C SG CYS 22 B CYS 22 1_555 C SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf27 C SG CYS 147 B CYS 147 1_555 C SG CYS 203 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 259 C ASN 237 1_555 D C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6BGT 
_atom_sites.fract_transf_matrix[1][1]    0.015908 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008737 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG C 1 701 1 NAG NAG . 
E 5 HOH C 1 801 21 HOH HOH . 
E 5 HOH C 2 802 23 HOH HOH . 
E 5 HOH C 3 803 25 HOH HOH . 
E 5 HOH C 4 804 19 HOH HOH . 
E 5 HOH C 5 805 24 HOH HOH . 
E 5 HOH C 6 806 9 HOH HOH . 
E 5 HOH C 7 807 26 HOH HOH . 
E 5 HOH C 8 808 5 HOH HOH . 
E 5 HOH C 9 809 4 HOH HOH . 
E 5 HOH C 10 810 3 HOH HOH . 
E 5 HOH C 11 811 7 HOH HOH . 
E 5 HOH C 12 812 11 HOH HOH . 
E 5 HOH C 13 813 1 HOH HOH . 
E 5 HOH C 14 814 22 HOH HOH . 
E 5 HOH C 15 815 16 HOH HOH . 
E 5 HOH C 16 816 17 HOH HOH . 
E 5 HOH C 17 817 14 HOH HOH . 
E 5 HOH C 18 818 6 HOH HOH . 
E 5 HOH C 19 819 12 HOH HOH . 
E 5 HOH C 20 820 13 HOH HOH . 
E 5 HOH C 21 821 29 HOH HOH . 
E 5 HOH C 22 822 15 HOH HOH . 
E 5 HOH C 23 823 20 HOH HOH . 
E 5 HOH C 24 824 18 HOH HOH . 
E 5 HOH C 25 825 28 HOH HOH . 
E 5 HOH C 26 826 10 HOH HOH . 
E 5 HOH C 27 827 8 HOH HOH . 
E 5 HOH C 28 828 2 HOH HOH . 
F 5 HOH A 1 301 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -19.478 45.231 -43.676 1 64.97 ? C1 NAG 701 C 1 
HETATM 2 C C2 NAG . . . D 4 -20.468 44.44 -44.579 1 59.41 ? C2 NAG 701 C 1 
HETATM 3 C C3 NAG . . . D 4 -21.44 43.615 -43.734 1 66.19 ? C3 NAG 701 C 1 
HETATM 4 C C4 NAG . . . D 4 -20.68 42.713 -42.774 1 67.82 ? C4 NAG 701 C 1 
HETATM 5 C C5 NAG . . . D 4 -19.786 43.56 -41.878 1 64.4 ? C5 NAG 701 C 1 
HETATM 6 C C6 NAG . . . D 4 -18.969 42.719 -40.922 1 63.6 ? C6 NAG 701 C 1 
HETATM 7 C C7 NAG . . . D 4 -21.226 45.146 -46.798 1 50.98 ? C7 NAG 701 C 1 
HETATM 8 C C8 NAG . . . D 4 -22.029 46.14 -47.576 1 43.92 ? C8 NAG 701 C 1 
HETATM 9 N N2 NAG . . . D 4 -21.196 45.324 -45.474 1 54.56 ? N2 NAG 701 C 1 
HETATM 10 O O3 NAG . . . D 4 -22.249 42.817 -44.592 1 72.27 ? O3 NAG 701 C 1 
HETATM 11 O O4 NAG . . . D 4 -21.586 41.954 -41.979 1 60.64 ? O4 NAG 701 C 1 
HETATM 12 O O5 NAG . . . D 4 -18.861 44.312 -42.683 1 64.41 ? O5 NAG 701 C 1 
HETATM 13 O O6 NAG . . . D 4 -17.653 43.225 -40.755 1 66.5 ? O6 NAG 701 C 1 
HETATM 14 O O7 NAG . . . D 4 -20.625 44.224 -47.343 1 59.68 ? O7 NAG 701 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#