data_6BGU
#
_model_server_result.job_id            2dESWQ5sYSDJr2_M8PLPRQ 
_model_server_result.datetime_utc      '2024-11-24 01:55:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bgu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":607}' 
#
_entry.id    6BGU 
#
_exptl.entry_id    6BGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.29 
_cell.angle_gamma         90 
_cell.entry_id            6BGU 
_cell.length_a            116.53 
_cell.length_b            62.084 
_cell.length_c            46.64 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc4 B N16 DKP . A DKP 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc5 C MN MN . A MN 602 1_555 L O HOH . A HOH 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc6 C MN MN . A MN 602 1_555 L O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 135 n n 
C1 C2 EDO sing 136 n n 
C1 H11 EDO sing 137 n n 
C1 H12 EDO sing 138 n n 
O1 HO1 EDO sing 139 n n 
C2 O2 EDO sing 140 n n 
C2 H21 EDO sing 141 n n 
C2 H22 EDO sing 142 n n 
O2 HO2 EDO sing 143 n n 
#
_atom_sites.entry_id                     6BGU 
_atom_sites.fract_transf_matrix[1][1]    0.008581 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000344 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016107 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021458 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DKP A 1 601 1 DKP 656 . 
C 3 MN A 1 602 1 MN MN . 
D 4 DMS A 1 603 401 DMS DMS . 
E 5 GOL A 1 604 501 GOL GOL . 
F 5 GOL A 1 605 502 GOL GOL . 
G 6 EDO A 1 606 601 EDO EDO . 
H 6 EDO A 1 607 602 EDO EDO . 
I 6 EDO A 1 608 603 EDO EDO . 
J 6 EDO A 1 609 604 EDO EDO . 
K 7 SO4 A 1 610 701 SO4 SO4 . 
L 8 HOH A 1 701 27 HOH HOH . 
L 8 HOH A 2 702 98 HOH HOH . 
L 8 HOH A 3 703 125 HOH HOH . 
L 8 HOH A 4 704 220 HOH HOH . 
L 8 HOH A 5 705 24 HOH HOH . 
L 8 HOH A 6 706 148 HOH HOH . 
L 8 HOH A 7 707 279 HOH HOH . 
L 8 HOH A 8 708 187 HOH HOH . 
L 8 HOH A 9 709 224 HOH HOH . 
L 8 HOH A 10 710 2 HOH HOH . 
L 8 HOH A 11 711 23 HOH HOH . 
L 8 HOH A 12 712 208 HOH HOH . 
L 8 HOH A 13 713 145 HOH HOH . 
L 8 HOH A 14 714 97 HOH HOH . 
L 8 HOH A 15 715 88 HOH HOH . 
L 8 HOH A 16 716 160 HOH HOH . 
L 8 HOH A 17 717 111 HOH HOH . 
L 8 HOH A 18 718 91 HOH HOH . 
L 8 HOH A 19 719 85 HOH HOH . 
L 8 HOH A 20 720 252 HOH HOH . 
L 8 HOH A 21 721 259 HOH HOH . 
L 8 HOH A 22 722 229 HOH HOH . 
L 8 HOH A 23 723 203 HOH HOH . 
L 8 HOH A 24 724 20 HOH HOH . 
L 8 HOH A 25 725 139 HOH HOH . 
L 8 HOH A 26 726 34 HOH HOH . 
L 8 HOH A 27 727 29 HOH HOH . 
L 8 HOH A 28 728 64 HOH HOH . 
L 8 HOH A 29 729 177 HOH HOH . 
L 8 HOH A 30 730 152 HOH HOH . 
L 8 HOH A 31 731 282 HOH HOH . 
L 8 HOH A 32 732 10 HOH HOH . 
L 8 HOH A 33 733 281 HOH HOH . 
L 8 HOH A 34 734 36 HOH HOH . 
L 8 HOH A 35 735 37 HOH HOH . 
L 8 HOH A 36 736 143 HOH HOH . 
L 8 HOH A 37 737 18 HOH HOH . 
L 8 HOH A 38 738 283 HOH HOH . 
L 8 HOH A 39 739 216 HOH HOH . 
L 8 HOH A 40 740 55 HOH HOH . 
L 8 HOH A 41 741 171 HOH HOH . 
L 8 HOH A 42 742 51 HOH HOH . 
L 8 HOH A 43 743 168 HOH HOH . 
L 8 HOH A 44 744 6 HOH HOH . 
L 8 HOH A 45 745 8 HOH HOH . 
L 8 HOH A 46 746 263 HOH HOH . 
L 8 HOH A 47 747 115 HOH HOH . 
L 8 HOH A 48 748 119 HOH HOH . 
L 8 HOH A 49 749 48 HOH HOH . 
L 8 HOH A 50 750 202 HOH HOH . 
L 8 HOH A 51 751 136 HOH HOH . 
L 8 HOH A 52 752 9 HOH HOH . 
L 8 HOH A 53 753 71 HOH HOH . 
L 8 HOH A 54 754 68 HOH HOH . 
L 8 HOH A 55 755 30 HOH HOH . 
L 8 HOH A 56 756 21 HOH HOH . 
L 8 HOH A 57 757 16 HOH HOH . 
L 8 HOH A 58 758 149 HOH HOH . 
L 8 HOH A 59 759 129 HOH HOH . 
L 8 HOH A 60 760 166 HOH HOH . 
L 8 HOH A 61 761 73 HOH HOH . 
L 8 HOH A 62 762 113 HOH HOH . 
L 8 HOH A 63 763 61 HOH HOH . 
L 8 HOH A 64 764 41 HOH HOH . 
L 8 HOH A 65 765 43 HOH HOH . 
L 8 HOH A 66 766 1 HOH HOH . 
L 8 HOH A 67 767 56 HOH HOH . 
L 8 HOH A 68 768 70 HOH HOH . 
L 8 HOH A 69 769 47 HOH HOH . 
L 8 HOH A 70 770 172 HOH HOH . 
L 8 HOH A 71 771 52 HOH HOH . 
L 8 HOH A 72 772 69 HOH HOH . 
L 8 HOH A 73 773 86 HOH HOH . 
L 8 HOH A 74 774 22 HOH HOH . 
L 8 HOH A 75 775 35 HOH HOH . 
L 8 HOH A 76 776 174 HOH HOH . 
L 8 HOH A 77 777 54 HOH HOH . 
L 8 HOH A 78 778 124 HOH HOH . 
L 8 HOH A 79 779 217 HOH HOH . 
L 8 HOH A 80 780 19 HOH HOH . 
L 8 HOH A 81 781 3 HOH HOH . 
L 8 HOH A 82 782 38 HOH HOH . 
L 8 HOH A 83 783 14 HOH HOH . 
L 8 HOH A 84 784 114 HOH HOH . 
L 8 HOH A 85 785 118 HOH HOH . 
L 8 HOH A 86 786 15 HOH HOH . 
L 8 HOH A 87 787 154 HOH HOH . 
L 8 HOH A 88 788 4 HOH HOH . 
L 8 HOH A 89 789 173 HOH HOH . 
L 8 HOH A 90 790 87 HOH HOH . 
L 8 HOH A 91 791 76 HOH HOH . 
L 8 HOH A 92 792 181 HOH HOH . 
L 8 HOH A 93 793 131 HOH HOH . 
L 8 HOH A 94 794 199 HOH HOH . 
L 8 HOH A 95 795 90 HOH HOH . 
L 8 HOH A 96 796 7 HOH HOH . 
L 8 HOH A 97 797 191 HOH HOH . 
L 8 HOH A 98 798 250 HOH HOH . 
L 8 HOH A 99 799 40 HOH HOH . 
L 8 HOH A 100 800 60 HOH HOH . 
L 8 HOH A 101 801 11 HOH HOH . 
L 8 HOH A 102 802 108 HOH HOH . 
L 8 HOH A 103 803 167 HOH HOH . 
L 8 HOH A 104 804 32 HOH HOH . 
L 8 HOH A 105 805 142 HOH HOH . 
L 8 HOH A 106 806 222 HOH HOH . 
L 8 HOH A 107 807 120 HOH HOH . 
L 8 HOH A 108 808 161 HOH HOH . 
L 8 HOH A 109 809 5 HOH HOH . 
L 8 HOH A 110 810 44 HOH HOH . 
L 8 HOH A 111 811 132 HOH HOH . 
L 8 HOH A 112 812 274 HOH HOH . 
L 8 HOH A 113 813 72 HOH HOH . 
L 8 HOH A 114 814 277 HOH HOH . 
L 8 HOH A 115 815 13 HOH HOH . 
L 8 HOH A 116 816 106 HOH HOH . 
L 8 HOH A 117 817 156 HOH HOH . 
L 8 HOH A 118 818 77 HOH HOH . 
L 8 HOH A 119 819 28 HOH HOH . 
L 8 HOH A 120 820 59 HOH HOH . 
L 8 HOH A 121 821 12 HOH HOH . 
L 8 HOH A 122 822 102 HOH HOH . 
L 8 HOH A 123 823 153 HOH HOH . 
L 8 HOH A 124 824 123 HOH HOH . 
L 8 HOH A 125 825 155 HOH HOH . 
L 8 HOH A 126 826 109 HOH HOH . 
L 8 HOH A 127 827 169 HOH HOH . 
L 8 HOH A 128 828 110 HOH HOH . 
L 8 HOH A 129 829 67 HOH HOH . 
L 8 HOH A 130 830 112 HOH HOH . 
L 8 HOH A 131 831 50 HOH HOH . 
L 8 HOH A 132 832 79 HOH HOH . 
L 8 HOH A 133 833 26 HOH HOH . 
L 8 HOH A 134 834 96 HOH HOH . 
L 8 HOH A 135 835 137 HOH HOH . 
L 8 HOH A 136 836 58 HOH HOH . 
L 8 HOH A 137 837 53 HOH HOH . 
L 8 HOH A 138 838 33 HOH HOH . 
L 8 HOH A 139 839 89 HOH HOH . 
L 8 HOH A 140 840 193 HOH HOH . 
L 8 HOH A 141 841 185 HOH HOH . 
L 8 HOH A 142 842 49 HOH HOH . 
L 8 HOH A 143 843 25 HOH HOH . 
L 8 HOH A 144 844 104 HOH HOH . 
L 8 HOH A 145 845 62 HOH HOH . 
L 8 HOH A 146 846 234 HOH HOH . 
L 8 HOH A 147 847 107 HOH HOH . 
L 8 HOH A 148 848 214 HOH HOH . 
L 8 HOH A 149 849 78 HOH HOH . 
L 8 HOH A 150 850 42 HOH HOH . 
L 8 HOH A 151 851 269 HOH HOH . 
L 8 HOH A 152 852 133 HOH HOH . 
L 8 HOH A 153 853 186 HOH HOH . 
L 8 HOH A 154 854 257 HOH HOH . 
L 8 HOH A 155 855 116 HOH HOH . 
L 8 HOH A 156 856 165 HOH HOH . 
L 8 HOH A 157 857 117 HOH HOH . 
L 8 HOH A 158 858 130 HOH HOH . 
L 8 HOH A 159 859 264 HOH HOH . 
L 8 HOH A 160 860 184 HOH HOH . 
L 8 HOH A 161 861 46 HOH HOH . 
L 8 HOH A 162 862 225 HOH HOH . 
L 8 HOH A 163 863 280 HOH HOH . 
L 8 HOH A 164 864 66 HOH HOH . 
L 8 HOH A 165 865 170 HOH HOH . 
L 8 HOH A 166 866 126 HOH HOH . 
L 8 HOH A 167 867 17 HOH HOH . 
L 8 HOH A 168 868 57 HOH HOH . 
L 8 HOH A 169 869 121 HOH HOH . 
L 8 HOH A 170 870 275 HOH HOH . 
L 8 HOH A 171 871 105 HOH HOH . 
L 8 HOH A 172 872 45 HOH HOH . 
L 8 HOH A 173 873 140 HOH HOH . 
L 8 HOH A 174 874 211 HOH HOH . 
L 8 HOH A 175 875 175 HOH HOH . 
L 8 HOH A 176 876 178 HOH HOH . 
L 8 HOH A 177 877 190 HOH HOH . 
L 8 HOH A 178 878 122 HOH HOH . 
L 8 HOH A 179 879 80 HOH HOH . 
L 8 HOH A 180 880 253 HOH HOH . 
L 8 HOH A 181 881 101 HOH HOH . 
L 8 HOH A 182 882 81 HOH HOH . 
L 8 HOH A 183 883 128 HOH HOH . 
L 8 HOH A 184 884 260 HOH HOH . 
L 8 HOH A 185 885 179 HOH HOH . 
L 8 HOH A 186 886 39 HOH HOH . 
L 8 HOH A 187 887 164 HOH HOH . 
L 8 HOH A 188 888 251 HOH HOH . 
L 8 HOH A 189 889 272 HOH HOH . 
L 8 HOH A 190 890 255 HOH HOH . 
L 8 HOH A 191 891 228 HOH HOH . 
L 8 HOH A 192 892 100 HOH HOH . 
L 8 HOH A 193 893 238 HOH HOH . 
L 8 HOH A 194 894 192 HOH HOH . 
L 8 HOH A 195 895 144 HOH HOH . 
L 8 HOH A 196 896 103 HOH HOH . 
L 8 HOH A 197 897 183 HOH HOH . 
L 8 HOH A 198 898 223 HOH HOH . 
L 8 HOH A 199 899 147 HOH HOH . 
L 8 HOH A 200 900 276 HOH HOH . 
L 8 HOH A 201 901 204 HOH HOH . 
L 8 HOH A 202 902 162 HOH HOH . 
L 8 HOH A 203 903 94 HOH HOH . 
L 8 HOH A 204 904 31 HOH HOH . 
L 8 HOH A 205 905 182 HOH HOH . 
L 8 HOH A 206 906 213 HOH HOH . 
L 8 HOH A 207 907 180 HOH HOH . 
L 8 HOH A 208 908 198 HOH HOH . 
L 8 HOH A 209 909 150 HOH HOH . 
L 8 HOH A 210 910 230 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 6 -28.032 18.743 36.426 1 42.71 ? C1 EDO 607 A 1 
HETATM 2 O O1 EDO . . . H 6 -27.033 19.761 36.297 1 42.72 ? O1 EDO 607 A 1 
HETATM 3 C C2 EDO . . . H 6 -28.013 17.858 35.186 1 42.37 ? C2 EDO 607 A 1 
HETATM 4 O O2 EDO . . . H 6 -28.273 18.656 34.026 1 42.27 ? O2 EDO 607 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           4 
#