data_6BGV # _model_server_result.job_id 3-3vIBlUZlLz5paDv7p6aw _model_server_result.datetime_utc '2024-11-27 20:02:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 6BGV # _exptl.entry_id 6BGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.32 _cell.angle_gamma 90 _cell.entry_id 6BGV _cell.length_a 116.289 _cell.length_b 61.883 _cell.length_c 46.735 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 B N28 DQG . A DQG 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 C MN MN . A MN 602 1_555 N O HOH . A HOH 753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc6 C MN MN . A MN 602 1_555 N O HOH . A HOH 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6BGV _atom_sites.fract_transf_matrix[1][1] 0.008599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000349 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQG A 1 601 1 DQG LIG . C 3 MN A 1 602 1 MN MN . D 4 GOL A 1 603 401 GOL GOL . E 4 GOL A 1 604 402 GOL GOL . F 4 GOL A 1 605 403 GOL GOL . G 4 GOL A 1 606 404 GOL GOL . H 5 DMS A 1 607 501 DMS DMS . I 5 DMS A 1 608 502 DMS DMS . J 6 EDO A 1 609 601 EDO EDO . K 6 EDO A 1 610 602 EDO EDO . L 6 EDO A 1 611 603 EDO EDO . M 6 EDO A 1 612 604 EDO EDO . N 7 HOH A 1 701 276 HOH HOH . N 7 HOH A 2 702 306 HOH HOH . N 7 HOH A 3 703 298 HOH HOH . N 7 HOH A 4 704 100 HOH HOH . N 7 HOH A 5 705 322 HOH HOH . N 7 HOH A 6 706 263 HOH HOH . N 7 HOH A 7 707 229 HOH HOH . N 7 HOH A 8 708 272 HOH HOH . N 7 HOH A 9 709 169 HOH HOH . N 7 HOH A 10 710 156 HOH HOH . N 7 HOH A 11 711 68 HOH HOH . N 7 HOH A 12 712 285 HOH HOH . N 7 HOH A 13 713 291 HOH HOH . N 7 HOH A 14 714 184 HOH HOH . N 7 HOH A 15 715 113 HOH HOH . N 7 HOH A 16 716 297 HOH HOH . N 7 HOH A 17 717 326 HOH HOH . N 7 HOH A 18 718 128 HOH HOH . N 7 HOH A 19 719 168 HOH HOH . N 7 HOH A 20 720 177 HOH HOH . N 7 HOH A 21 721 55 HOH HOH . N 7 HOH A 22 722 345 HOH HOH . N 7 HOH A 23 723 90 HOH HOH . N 7 HOH A 24 724 74 HOH HOH . N 7 HOH A 25 725 205 HOH HOH . N 7 HOH A 26 726 280 HOH HOH . N 7 HOH A 27 727 56 HOH HOH . N 7 HOH A 28 728 91 HOH HOH . N 7 HOH A 29 729 212 HOH HOH . N 7 HOH A 30 730 4 HOH HOH . N 7 HOH A 31 731 83 HOH HOH . N 7 HOH A 32 732 206 HOH HOH . N 7 HOH A 33 733 161 HOH HOH . N 7 HOH A 34 734 221 HOH HOH . N 7 HOH A 35 735 198 HOH HOH . N 7 HOH A 36 736 209 HOH HOH . N 7 HOH A 37 737 7 HOH HOH . N 7 HOH A 38 738 145 HOH HOH . N 7 HOH A 39 739 72 HOH HOH . N 7 HOH A 40 740 232 HOH HOH . N 7 HOH A 41 741 107 HOH HOH . N 7 HOH A 42 742 183 HOH HOH . N 7 HOH A 43 743 137 HOH HOH . N 7 HOH A 44 744 299 HOH HOH . N 7 HOH A 45 745 39 HOH HOH . N 7 HOH A 46 746 254 HOH HOH . N 7 HOH A 47 747 37 HOH HOH . N 7 HOH A 48 748 101 HOH HOH . N 7 HOH A 49 749 158 HOH HOH . N 7 HOH A 50 750 189 HOH HOH . N 7 HOH A 51 751 43 HOH HOH . N 7 HOH A 52 752 9 HOH HOH . N 7 HOH A 53 753 132 HOH HOH . N 7 HOH A 54 754 16 HOH HOH . N 7 HOH A 55 755 59 HOH HOH . N 7 HOH A 56 756 287 HOH HOH . N 7 HOH A 57 757 15 HOH HOH . N 7 HOH A 58 758 181 HOH HOH . N 7 HOH A 59 759 10 HOH HOH . N 7 HOH A 60 760 316 HOH HOH . N 7 HOH A 61 761 248 HOH HOH . N 7 HOH A 62 762 303 HOH HOH . N 7 HOH A 63 763 162 HOH HOH . N 7 HOH A 64 764 208 HOH HOH . N 7 HOH A 65 765 112 HOH HOH . N 7 HOH A 66 766 111 HOH HOH . N 7 HOH A 67 767 118 HOH HOH . N 7 HOH A 68 768 202 HOH HOH . N 7 HOH A 69 769 199 HOH HOH . N 7 HOH A 70 770 5 HOH HOH . N 7 HOH A 71 771 52 HOH HOH . N 7 HOH A 72 772 61 HOH HOH . N 7 HOH A 73 773 339 HOH HOH . N 7 HOH A 74 774 79 HOH HOH . N 7 HOH A 75 775 142 HOH HOH . N 7 HOH A 76 776 110 HOH HOH . N 7 HOH A 77 777 64 HOH HOH . N 7 HOH A 78 778 151 HOH HOH . N 7 HOH A 79 779 84 HOH HOH . N 7 HOH A 80 780 259 HOH HOH . N 7 HOH A 81 781 178 HOH HOH . N 7 HOH A 82 782 13 HOH HOH . N 7 HOH A 83 783 78 HOH HOH . N 7 HOH A 84 784 80 HOH HOH . N 7 HOH A 85 785 97 HOH HOH . N 7 HOH A 86 786 19 HOH HOH . N 7 HOH A 87 787 50 HOH HOH . N 7 HOH A 88 788 213 HOH HOH . N 7 HOH A 89 789 269 HOH HOH . N 7 HOH A 90 790 288 HOH HOH . N 7 HOH A 91 791 187 HOH HOH . N 7 HOH A 92 792 40 HOH HOH . N 7 HOH A 93 793 148 HOH HOH . N 7 HOH A 94 794 73 HOH HOH . N 7 HOH A 95 795 277 HOH HOH . N 7 HOH A 96 796 191 HOH HOH . N 7 HOH A 97 797 135 HOH HOH . N 7 HOH A 98 798 71 HOH HOH . N 7 HOH A 99 799 30 HOH HOH . N 7 HOH A 100 800 42 HOH HOH . N 7 HOH A 101 801 11 HOH HOH . N 7 HOH A 102 802 122 HOH HOH . N 7 HOH A 103 803 41 HOH HOH . N 7 HOH A 104 804 38 HOH HOH . N 7 HOH A 105 805 295 HOH HOH . N 7 HOH A 106 806 25 HOH HOH . N 7 HOH A 107 807 21 HOH HOH . N 7 HOH A 108 808 48 HOH HOH . N 7 HOH A 109 809 133 HOH HOH . N 7 HOH A 110 810 320 HOH HOH . N 7 HOH A 111 811 45 HOH HOH . N 7 HOH A 112 812 2 HOH HOH . N 7 HOH A 113 813 89 HOH HOH . N 7 HOH A 114 814 17 HOH HOH . N 7 HOH A 115 815 290 HOH HOH . N 7 HOH A 116 816 253 HOH HOH . N 7 HOH A 117 817 144 HOH HOH . N 7 HOH A 118 818 153 HOH HOH . N 7 HOH A 119 819 81 HOH HOH . N 7 HOH A 120 820 92 HOH HOH . N 7 HOH A 121 821 66 HOH HOH . N 7 HOH A 122 822 14 HOH HOH . N 7 HOH A 123 823 127 HOH HOH . N 7 HOH A 124 824 252 HOH HOH . N 7 HOH A 125 825 46 HOH HOH . N 7 HOH A 126 826 233 HOH HOH . N 7 HOH A 127 827 86 HOH HOH . N 7 HOH A 128 828 63 HOH HOH . N 7 HOH A 129 829 85 HOH HOH . N 7 HOH A 130 830 134 HOH HOH . N 7 HOH A 131 831 49 HOH HOH . N 7 HOH A 132 832 197 HOH HOH . N 7 HOH A 133 833 108 HOH HOH . N 7 HOH A 134 834 26 HOH HOH . N 7 HOH A 135 835 333 HOH HOH . N 7 HOH A 136 836 22 HOH HOH . N 7 HOH A 137 837 334 HOH HOH . N 7 HOH A 138 838 225 HOH HOH . N 7 HOH A 139 839 33 HOH HOH . N 7 HOH A 140 840 296 HOH HOH . N 7 HOH A 141 841 292 HOH HOH . N 7 HOH A 142 842 96 HOH HOH . N 7 HOH A 143 843 300 HOH HOH . N 7 HOH A 144 844 257 HOH HOH . N 7 HOH A 145 845 69 HOH HOH . N 7 HOH A 146 846 131 HOH HOH . N 7 HOH A 147 847 342 HOH HOH . N 7 HOH A 148 848 119 HOH HOH . N 7 HOH A 149 849 6 HOH HOH . N 7 HOH A 150 850 347 HOH HOH . N 7 HOH A 151 851 114 HOH HOH . N 7 HOH A 152 852 335 HOH HOH . N 7 HOH A 153 853 77 HOH HOH . N 7 HOH A 154 854 94 HOH HOH . N 7 HOH A 155 855 12 HOH HOH . N 7 HOH A 156 856 332 HOH HOH . N 7 HOH A 157 857 319 HOH HOH . N 7 HOH A 158 858 32 HOH HOH . N 7 HOH A 159 859 60 HOH HOH . N 7 HOH A 160 860 258 HOH HOH . N 7 HOH A 161 861 8 HOH HOH . N 7 HOH A 162 862 141 HOH HOH . N 7 HOH A 163 863 262 HOH HOH . N 7 HOH A 164 864 102 HOH HOH . N 7 HOH A 165 865 240 HOH HOH . N 7 HOH A 166 866 124 HOH HOH . N 7 HOH A 167 867 115 HOH HOH . N 7 HOH A 168 868 53 HOH HOH . N 7 HOH A 169 869 70 HOH HOH . N 7 HOH A 170 870 34 HOH HOH . N 7 HOH A 171 871 186 HOH HOH . N 7 HOH A 172 872 1 HOH HOH . N 7 HOH A 173 873 337 HOH HOH . N 7 HOH A 174 874 67 HOH HOH . N 7 HOH A 175 875 238 HOH HOH . N 7 HOH A 176 876 93 HOH HOH . N 7 HOH A 177 877 159 HOH HOH . N 7 HOH A 178 878 325 HOH HOH . N 7 HOH A 179 879 130 HOH HOH . N 7 HOH A 180 880 18 HOH HOH . N 7 HOH A 181 881 54 HOH HOH . N 7 HOH A 182 882 255 HOH HOH . N 7 HOH A 183 883 278 HOH HOH . N 7 HOH A 184 884 44 HOH HOH . N 7 HOH A 185 885 309 HOH HOH . N 7 HOH A 186 886 103 HOH HOH . N 7 HOH A 187 887 164 HOH HOH . N 7 HOH A 188 888 283 HOH HOH . N 7 HOH A 189 889 150 HOH HOH . N 7 HOH A 190 890 315 HOH HOH . N 7 HOH A 191 891 121 HOH HOH . N 7 HOH A 192 892 65 HOH HOH . N 7 HOH A 193 893 338 HOH HOH . N 7 HOH A 194 894 301 HOH HOH . N 7 HOH A 195 895 267 HOH HOH . N 7 HOH A 196 896 87 HOH HOH . N 7 HOH A 197 897 47 HOH HOH . N 7 HOH A 198 898 330 HOH HOH . N 7 HOH A 199 899 329 HOH HOH . N 7 HOH A 200 900 138 HOH HOH . N 7 HOH A 201 901 344 HOH HOH . N 7 HOH A 202 902 249 HOH HOH . N 7 HOH A 203 903 149 HOH HOH . N 7 HOH A 204 904 324 HOH HOH . N 7 HOH A 205 905 275 HOH HOH . N 7 HOH A 206 906 126 HOH HOH . N 7 HOH A 207 907 215 HOH HOH . N 7 HOH A 208 908 331 HOH HOH . N 7 HOH A 209 909 152 HOH HOH . N 7 HOH A 210 910 219 HOH HOH . N 7 HOH A 211 911 286 HOH HOH . N 7 HOH A 212 912 51 HOH HOH . N 7 HOH A 213 913 173 HOH HOH . N 7 HOH A 214 914 117 HOH HOH . N 7 HOH A 215 915 265 HOH HOH . N 7 HOH A 216 916 304 HOH HOH . N 7 HOH A 217 917 341 HOH HOH . N 7 HOH A 218 918 302 HOH HOH . N 7 HOH A 219 919 228 HOH HOH . N 7 HOH A 220 920 245 HOH HOH . N 7 HOH A 221 921 214 HOH HOH . N 7 HOH A 222 922 207 HOH HOH . N 7 HOH A 223 923 343 HOH HOH . N 7 HOH A 224 924 346 HOH HOH . N 7 HOH A 225 925 247 HOH HOH . N 7 HOH A 226 926 216 HOH HOH . N 7 HOH A 227 927 29 HOH HOH . N 7 HOH A 228 928 323 HOH HOH . N 7 HOH A 229 929 160 HOH HOH . N 7 HOH A 230 930 274 HOH HOH . N 7 HOH A 231 931 136 HOH HOH . N 7 HOH A 232 932 241 HOH HOH . N 7 HOH A 233 933 243 HOH HOH . N 7 HOH A 234 934 340 HOH HOH . N 7 HOH A 235 935 314 HOH HOH . N 7 HOH A 236 936 264 HOH HOH . N 7 HOH A 237 937 230 HOH HOH . N 7 HOH A 238 938 256 HOH HOH . N 7 HOH A 239 939 125 HOH HOH . N 7 HOH A 240 940 99 HOH HOH . N 7 HOH A 241 941 170 HOH HOH . N 7 HOH A 242 942 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 5 -5.022 31.273 18.214 1 92.98 ? S DMS 608 A 1 HETATM 2 O O DMS . . . I 5 -5.692 31.36 19.546 1 93.94 ? O DMS 608 A 1 HETATM 3 C C1 DMS . . . I 5 -5.414 29.666 17.475 1 91.83 ? C1 DMS 608 A 1 HETATM 4 C C2 DMS . . . I 5 -5.848 32.38 17.037 1 92.2 ? C2 DMS 608 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 4 #