data_6BGW # _model_server_result.job_id apDwMCYF_rWZUeIe5c8cLg _model_server_result.datetime_utc '2024-11-08 04:09:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bgw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":608}' # _entry.id 6BGW # _exptl.entry_id 6BGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.13 _cell.angle_gamma 90 _cell.entry_id 6BGW _cell.length_a 116.577 _cell.length_b 61.825 _cell.length_c 46.758 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 B N28 DKS . A DKS 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 C MN MN . A MN 602 1_555 J O HOH . A HOH 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc6 C MN MN . A MN 602 1_555 J O HOH . A HOH 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 139 n n S C1 DMS sing 140 n n S C2 DMS sing 141 n n C1 H11 DMS sing 142 n n C1 H12 DMS sing 143 n n C1 H13 DMS sing 144 n n C2 H21 DMS sing 145 n n C2 H22 DMS sing 146 n n C2 H23 DMS sing 147 n n # _atom_sites.entry_id 6BGW _atom_sites.fract_transf_matrix[1][1] 0.008578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000319 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DKS A 1 601 1 DKS LIG . C 3 MN A 1 602 1 MN MN . D 4 GOL A 1 603 301 GOL GOL . E 4 GOL A 1 604 302 GOL GOL . F 4 GOL A 1 605 303 GOL GOL . G 4 GOL A 1 606 305 GOL GOL . H 4 GOL A 1 607 306 GOL GOL . I 5 DMS A 1 608 401 DMS DMS . J 6 HOH A 1 701 156 HOH HOH . J 6 HOH A 2 702 52 HOH HOH . J 6 HOH A 3 703 221 HOH HOH . J 6 HOH A 4 704 229 HOH HOH . J 6 HOH A 5 705 169 HOH HOH . J 6 HOH A 6 706 184 HOH HOH . J 6 HOH A 7 707 113 HOH HOH . J 6 HOH A 8 708 205 HOH HOH . J 6 HOH A 9 709 68 HOH HOH . J 6 HOH A 10 710 161 HOH HOH . J 6 HOH A 11 711 275 HOH HOH . J 6 HOH A 12 712 263 HOH HOH . J 6 HOH A 13 713 74 HOH HOH . J 6 HOH A 14 714 145 HOH HOH . J 6 HOH A 15 715 4 HOH HOH . J 6 HOH A 16 716 91 HOH HOH . J 6 HOH A 17 717 272 HOH HOH . J 6 HOH A 18 718 56 HOH HOH . J 6 HOH A 19 719 83 HOH HOH . J 6 HOH A 20 720 134 HOH HOH . J 6 HOH A 21 721 266 HOH HOH . J 6 HOH A 22 722 232 HOH HOH . J 6 HOH A 23 723 256 HOH HOH . J 6 HOH A 24 724 43 HOH HOH . J 6 HOH A 25 725 90 HOH HOH . J 6 HOH A 26 726 72 HOH HOH . J 6 HOH A 27 727 168 HOH HOH . J 6 HOH A 28 728 7 HOH HOH . J 6 HOH A 29 729 128 HOH HOH . J 6 HOH A 30 730 16 HOH HOH . J 6 HOH A 31 731 64 HOH HOH . J 6 HOH A 32 732 107 HOH HOH . J 6 HOH A 33 733 202 HOH HOH . J 6 HOH A 34 734 15 HOH HOH . J 6 HOH A 35 735 34 HOH HOH . J 6 HOH A 36 736 112 HOH HOH . J 6 HOH A 37 737 142 HOH HOH . J 6 HOH A 38 738 158 HOH HOH . J 6 HOH A 39 739 137 HOH HOH . J 6 HOH A 40 740 191 HOH HOH . J 6 HOH A 41 741 189 HOH HOH . J 6 HOH A 42 742 265 HOH HOH . J 6 HOH A 43 743 9 HOH HOH . J 6 HOH A 44 744 183 HOH HOH . J 6 HOH A 45 745 100 HOH HOH . J 6 HOH A 46 746 37 HOH HOH . J 6 HOH A 47 747 209 HOH HOH . J 6 HOH A 48 748 62 HOH HOH . J 6 HOH A 49 749 177 HOH HOH . J 6 HOH A 50 750 199 HOH HOH . J 6 HOH A 51 751 79 HOH HOH . J 6 HOH A 52 752 122 HOH HOH . J 6 HOH A 53 753 118 HOH HOH . J 6 HOH A 54 754 42 HOH HOH . J 6 HOH A 55 755 25 HOH HOH . J 6 HOH A 56 756 10 HOH HOH . J 6 HOH A 57 757 248 HOH HOH . J 6 HOH A 58 758 101 HOH HOH . J 6 HOH A 59 759 5 HOH HOH . J 6 HOH A 60 760 21 HOH HOH . J 6 HOH A 61 761 178 HOH HOH . J 6 HOH A 62 762 262 HOH HOH . J 6 HOH A 63 763 132 HOH HOH . J 6 HOH A 64 764 144 HOH HOH . J 6 HOH A 65 765 208 HOH HOH . J 6 HOH A 66 766 97 HOH HOH . J 6 HOH A 67 767 172 HOH HOH . J 6 HOH A 68 768 197 HOH HOH . J 6 HOH A 69 769 181 HOH HOH . J 6 HOH A 70 770 59 HOH HOH . J 6 HOH A 71 771 40 HOH HOH . J 6 HOH A 72 772 50 HOH HOH . J 6 HOH A 73 773 111 HOH HOH . J 6 HOH A 74 774 127 HOH HOH . J 6 HOH A 75 775 2 HOH HOH . J 6 HOH A 76 776 198 HOH HOH . J 6 HOH A 77 777 92 HOH HOH . J 6 HOH A 78 778 268 HOH HOH . J 6 HOH A 79 779 151 HOH HOH . J 6 HOH A 80 780 13 HOH HOH . J 6 HOH A 81 781 49 HOH HOH . J 6 HOH A 82 782 41 HOH HOH . J 6 HOH A 83 783 73 HOH HOH . J 6 HOH A 84 784 67 HOH HOH . J 6 HOH A 85 785 61 HOH HOH . J 6 HOH A 86 786 135 HOH HOH . J 6 HOH A 87 787 126 HOH HOH . J 6 HOH A 88 788 81 HOH HOH . J 6 HOH A 89 789 55 HOH HOH . J 6 HOH A 90 790 153 HOH HOH . J 6 HOH A 91 791 159 HOH HOH . J 6 HOH A 92 792 30 HOH HOH . J 6 HOH A 93 793 165 HOH HOH . J 6 HOH A 94 794 48 HOH HOH . J 6 HOH A 95 795 38 HOH HOH . J 6 HOH A 96 796 45 HOH HOH . J 6 HOH A 97 797 46 HOH HOH . J 6 HOH A 98 798 39 HOH HOH . J 6 HOH A 99 799 11 HOH HOH . J 6 HOH A 100 800 204 HOH HOH . J 6 HOH A 101 801 84 HOH HOH . J 6 HOH A 102 802 89 HOH HOH . J 6 HOH A 103 803 22 HOH HOH . J 6 HOH A 104 804 133 HOH HOH . J 6 HOH A 105 805 19 HOH HOH . J 6 HOH A 106 806 33 HOH HOH . J 6 HOH A 107 807 32 HOH HOH . J 6 HOH A 108 808 77 HOH HOH . J 6 HOH A 109 809 63 HOH HOH . J 6 HOH A 110 810 131 HOH HOH . J 6 HOH A 111 811 271 HOH HOH . J 6 HOH A 112 812 70 HOH HOH . J 6 HOH A 113 813 104 HOH HOH . J 6 HOH A 114 814 80 HOH HOH . J 6 HOH A 115 815 193 HOH HOH . J 6 HOH A 116 816 225 HOH HOH . J 6 HOH A 117 817 1 HOH HOH . J 6 HOH A 118 818 110 HOH HOH . J 6 HOH A 119 819 162 HOH HOH . J 6 HOH A 120 820 187 HOH HOH . J 6 HOH A 121 821 130 HOH HOH . J 6 HOH A 122 822 66 HOH HOH . J 6 HOH A 123 823 147 HOH HOH . J 6 HOH A 124 824 26 HOH HOH . J 6 HOH A 125 825 233 HOH HOH . J 6 HOH A 126 826 60 HOH HOH . J 6 HOH A 127 827 108 HOH HOH . J 6 HOH A 128 828 93 HOH HOH . J 6 HOH A 129 829 71 HOH HOH . J 6 HOH A 130 830 14 HOH HOH . J 6 HOH A 131 831 85 HOH HOH . J 6 HOH A 132 832 213 HOH HOH . J 6 HOH A 133 833 274 HOH HOH . J 6 HOH A 134 834 17 HOH HOH . J 6 HOH A 135 835 124 HOH HOH . J 6 HOH A 136 836 53 HOH HOH . J 6 HOH A 137 837 78 HOH HOH . J 6 HOH A 138 838 148 HOH HOH . J 6 HOH A 139 839 150 HOH HOH . J 6 HOH A 140 840 8 HOH HOH . J 6 HOH A 141 841 121 HOH HOH . J 6 HOH A 142 842 69 HOH HOH . J 6 HOH A 143 843 114 HOH HOH . J 6 HOH A 144 844 240 HOH HOH . J 6 HOH A 145 845 252 HOH HOH . J 6 HOH A 146 846 115 HOH HOH . J 6 HOH A 147 847 94 HOH HOH . J 6 HOH A 148 848 86 HOH HOH . J 6 HOH A 149 849 65 HOH HOH . J 6 HOH A 150 850 260 HOH HOH . J 6 HOH A 151 851 96 HOH HOH . J 6 HOH A 152 852 102 HOH HOH . J 6 HOH A 153 853 6 HOH HOH . J 6 HOH A 154 854 103 HOH HOH . J 6 HOH A 155 855 44 HOH HOH . J 6 HOH A 156 856 23 HOH HOH . J 6 HOH A 157 857 273 HOH HOH . J 6 HOH A 158 858 12 HOH HOH . J 6 HOH A 159 859 119 HOH HOH . J 6 HOH A 160 860 186 HOH HOH . J 6 HOH A 161 861 255 HOH HOH . J 6 HOH A 162 862 149 HOH HOH . J 6 HOH A 163 863 164 HOH HOH . J 6 HOH A 164 864 47 HOH HOH . J 6 HOH A 165 865 238 HOH HOH . J 6 HOH A 166 866 18 HOH HOH . J 6 HOH A 167 867 259 HOH HOH . J 6 HOH A 168 868 54 HOH HOH . J 6 HOH A 169 869 87 HOH HOH . J 6 HOH A 170 870 219 HOH HOH . J 6 HOH A 171 871 215 HOH HOH . J 6 HOH A 172 872 173 HOH HOH . J 6 HOH A 173 873 269 HOH HOH . J 6 HOH A 174 874 222 HOH HOH . J 6 HOH A 175 875 141 HOH HOH . J 6 HOH A 176 876 117 HOH HOH . J 6 HOH A 177 877 152 HOH HOH . J 6 HOH A 178 878 207 HOH HOH . J 6 HOH A 179 879 51 HOH HOH . J 6 HOH A 180 880 245 HOH HOH . J 6 HOH A 181 881 216 HOH HOH . J 6 HOH A 182 882 214 HOH HOH . J 6 HOH A 183 883 228 HOH HOH . J 6 HOH A 184 884 257 HOH HOH . J 6 HOH A 185 885 258 HOH HOH . J 6 HOH A 186 886 247 HOH HOH . J 6 HOH A 187 887 243 HOH HOH . J 6 HOH A 188 888 230 HOH HOH . J 6 HOH A 189 889 29 HOH HOH . J 6 HOH A 190 890 136 HOH HOH . J 6 HOH A 191 891 218 HOH HOH . J 6 HOH A 192 892 160 HOH HOH . J 6 HOH A 193 893 241 HOH HOH . J 6 HOH A 194 894 236 HOH HOH . J 6 HOH A 195 895 223 HOH HOH . J 6 HOH A 196 896 244 HOH HOH . J 6 HOH A 197 897 264 HOH HOH . J 6 HOH A 198 898 163 HOH HOH . J 6 HOH A 199 899 99 HOH HOH . J 6 HOH A 200 900 170 HOH HOH . J 6 HOH A 201 901 125 HOH HOH . J 6 HOH A 202 902 231 HOH HOH . J 6 HOH A 203 903 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 5 -4.507 30.884 17.844 1 75.95 ? S DMS 608 A 1 HETATM 2 O O DMS . . . I 5 -4.346 29.847 16.779 1 75.93 ? O DMS 608 A 1 HETATM 3 C C1 DMS . . . I 5 -5.515 32.25 17.205 1 75.93 ? C1 DMS 608 A 1 HETATM 4 C C2 DMS . . . I 5 -5.611 30.256 19.139 1 75.85 ? C2 DMS 608 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #