data_6BGX # _model_server_result.job_id WqtTSTtYCOtFZVjViVDsoQ _model_server_result.datetime_utc '2025-02-17 14:35:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6BGX # _exptl.entry_id 6BGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.864 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{(S)-(2-chlorophenyl)[(4,4-difluorocyclohexyl)methoxy]methyl}-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.36 _cell.angle_gamma 90 _cell.entry_id 6BGX _cell.length_a 115.365 _cell.length_b 61.85 _cell.length_c 46.541 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 B N06 DKV . A DKV 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 C MN MN . A MN 602 1_555 H O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 C MN MN . A MN 602 1_555 H O HOH . A HOH 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C22 H21 Cl F2 N2 O3' _chem_comp.formula_weight 434.864 _chem_comp.id DKV _chem_comp.mon_nstd_flag . _chem_comp.name '2-{(S)-(2-chlorophenyl)[(4,4-difluorocyclohexyl)methoxy]methyl}-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F26 C24 DKV sing 83 n n C24 F25 DKV sing 84 n n C24 C23 DKV sing 85 n n C24 C27 DKV sing 86 n n C23 C22 DKV sing 87 n n C27 C28 DKV sing 88 n n C22 C21 DKV sing 89 n n C28 C21 DKV sing 90 n n C21 C20 DKV sing 91 n n C20 O19 DKV sing 92 n n O19 C11 DKV sing 93 n n C29 C07 DKV sing 94 n y C29 C10 DKV doub 95 n y C13 C14 DKV doub 96 n y C13 C12 DKV sing 97 n y N06 C07 DKV doub 98 n y N06 C05 DKV sing 99 n y C11 C10 DKV sing 100 n n C11 C12 DKV sing 101 n n C14 C15 DKV sing 102 n y C07 C08 DKV sing 103 n y C10 N09 DKV sing 104 n y C12 C17 DKV doub 105 n y C05 C04 DKV doub 106 n y C15 C16 DKV doub 107 n y C08 N09 DKV sing 108 n y C08 C03 DKV doub 109 n y C17 C16 DKV sing 110 n y C17 CL1 DKV sing 111 n n C04 C03 DKV sing 112 n y C03 C02 DKV sing 113 n n C02 O01 DKV doub 114 n n C02 O30 DKV sing 115 n n C13 H1 DKV sing 116 n n C15 H2 DKV sing 117 n n C20 H3 DKV sing 118 n n C20 H4 DKV sing 119 n n C21 H5 DKV sing 120 n n C22 H6 DKV sing 121 n n C22 H7 DKV sing 122 n n C28 H8 DKV sing 123 n n C28 H9 DKV sing 124 n n C04 H10 DKV sing 125 n n C05 H11 DKV sing 126 n n C11 H12 DKV sing 127 n n C14 H13 DKV sing 128 n n C16 H14 DKV sing 129 n n C23 H15 DKV sing 130 n n C23 H16 DKV sing 131 n n C27 H17 DKV sing 132 n n C27 H18 DKV sing 133 n n C29 H19 DKV sing 134 n n N09 H20 DKV sing 135 n n O30 H21 DKV sing 136 n n # _atom_sites.entry_id 6BGX _atom_sites.fract_transf_matrix[1][1] 0.008668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000358 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DKV A 1 601 1 DKV LIG . C 3 MN A 1 602 1 MN MN . D 4 GOL A 1 603 401 GOL GOL . E 4 GOL A 1 604 402 GOL GOL . F 5 EDO A 1 605 501 EDO EDO . G 5 EDO A 1 606 502 EDO EDO . H 6 HOH A 1 701 299 HOH HOH . H 6 HOH A 2 702 49 HOH HOH . H 6 HOH A 3 703 343 HOH HOH . H 6 HOH A 4 704 35 HOH HOH . H 6 HOH A 5 705 332 HOH HOH . H 6 HOH A 6 706 337 HOH HOH . H 6 HOH A 7 707 29 HOH HOH . H 6 HOH A 8 708 103 HOH HOH . H 6 HOH A 9 709 36 HOH HOH . H 6 HOH A 10 710 331 HOH HOH . H 6 HOH A 11 711 357 HOH HOH . H 6 HOH A 12 712 7 HOH HOH . H 6 HOH A 13 713 346 HOH HOH . H 6 HOH A 14 714 3 HOH HOH . H 6 HOH A 15 715 259 HOH HOH . H 6 HOH A 16 716 22 HOH HOH . H 6 HOH A 17 717 89 HOH HOH . H 6 HOH A 18 718 10 HOH HOH . H 6 HOH A 19 719 317 HOH HOH . H 6 HOH A 20 720 26 HOH HOH . H 6 HOH A 21 721 47 HOH HOH . H 6 HOH A 22 722 356 HOH HOH . H 6 HOH A 23 723 34 HOH HOH . H 6 HOH A 24 724 254 HOH HOH . H 6 HOH A 25 725 350 HOH HOH . H 6 HOH A 26 726 287 HOH HOH . H 6 HOH A 27 727 25 HOH HOH . H 6 HOH A 28 728 341 HOH HOH . H 6 HOH A 29 729 2 HOH HOH . H 6 HOH A 30 730 351 HOH HOH . H 6 HOH A 31 731 43 HOH HOH . H 6 HOH A 32 732 327 HOH HOH . H 6 HOH A 33 733 1 HOH HOH . H 6 HOH A 34 734 328 HOH HOH . H 6 HOH A 35 735 100 HOH HOH . H 6 HOH A 36 736 312 HOH HOH . H 6 HOH A 37 737 140 HOH HOH . H 6 HOH A 38 738 300 HOH HOH . H 6 HOH A 39 739 93 HOH HOH . H 6 HOH A 40 740 40 HOH HOH . H 6 HOH A 41 741 102 HOH HOH . H 6 HOH A 42 742 111 HOH HOH . H 6 HOH A 43 743 71 HOH HOH . H 6 HOH A 44 744 82 HOH HOH . H 6 HOH A 45 745 109 HOH HOH . H 6 HOH A 46 746 296 HOH HOH . H 6 HOH A 47 747 23 HOH HOH . H 6 HOH A 48 748 70 HOH HOH . H 6 HOH A 49 749 19 HOH HOH . H 6 HOH A 50 750 347 HOH HOH . H 6 HOH A 51 751 116 HOH HOH . H 6 HOH A 52 752 243 HOH HOH . H 6 HOH A 53 753 64 HOH HOH . H 6 HOH A 54 754 295 HOH HOH . H 6 HOH A 55 755 9 HOH HOH . H 6 HOH A 56 756 302 HOH HOH . H 6 HOH A 57 757 13 HOH HOH . H 6 HOH A 58 758 57 HOH HOH . H 6 HOH A 59 759 67 HOH HOH . H 6 HOH A 60 760 257 HOH HOH . H 6 HOH A 61 761 122 HOH HOH . H 6 HOH A 62 762 46 HOH HOH . H 6 HOH A 63 763 68 HOH HOH . H 6 HOH A 64 764 17 HOH HOH . H 6 HOH A 65 765 329 HOH HOH . H 6 HOH A 66 766 8 HOH HOH . H 6 HOH A 67 767 297 HOH HOH . H 6 HOH A 68 768 108 HOH HOH . H 6 HOH A 69 769 80 HOH HOH . H 6 HOH A 70 770 66 HOH HOH . H 6 HOH A 71 771 217 HOH HOH . H 6 HOH A 72 772 318 HOH HOH . H 6 HOH A 73 773 323 HOH HOH . H 6 HOH A 74 774 316 HOH HOH . H 6 HOH A 75 775 291 HOH HOH . H 6 HOH A 76 776 294 HOH HOH . H 6 HOH A 77 777 242 HOH HOH . H 6 HOH A 78 778 61 HOH HOH . H 6 HOH A 79 779 37 HOH HOH . H 6 HOH A 80 780 4 HOH HOH . H 6 HOH A 81 781 126 HOH HOH . H 6 HOH A 82 782 135 HOH HOH . H 6 HOH A 83 783 30 HOH HOH . H 6 HOH A 84 784 211 HOH HOH . H 6 HOH A 85 785 161 HOH HOH . H 6 HOH A 86 786 27 HOH HOH . H 6 HOH A 87 787 241 HOH HOH . H 6 HOH A 88 788 306 HOH HOH . H 6 HOH A 89 789 21 HOH HOH . H 6 HOH A 90 790 73 HOH HOH . H 6 HOH A 91 791 352 HOH HOH . H 6 HOH A 92 792 6 HOH HOH . H 6 HOH A 93 793 88 HOH HOH . H 6 HOH A 94 794 336 HOH HOH . H 6 HOH A 95 795 339 HOH HOH . H 6 HOH A 96 796 5 HOH HOH . H 6 HOH A 97 797 325 HOH HOH . H 6 HOH A 98 798 106 HOH HOH . H 6 HOH A 99 799 112 HOH HOH . H 6 HOH A 100 800 90 HOH HOH . H 6 HOH A 101 801 283 HOH HOH . H 6 HOH A 102 802 188 HOH HOH . H 6 HOH A 103 803 86 HOH HOH . H 6 HOH A 104 804 298 HOH HOH . H 6 HOH A 105 805 16 HOH HOH . H 6 HOH A 106 806 84 HOH HOH . H 6 HOH A 107 807 240 HOH HOH . H 6 HOH A 108 808 284 HOH HOH . H 6 HOH A 109 809 38 HOH HOH . H 6 HOH A 110 810 146 HOH HOH . H 6 HOH A 111 811 246 HOH HOH . H 6 HOH A 112 812 235 HOH HOH . H 6 HOH A 113 813 281 HOH HOH . H 6 HOH A 114 814 142 HOH HOH . H 6 HOH A 115 815 321 HOH HOH . H 6 HOH A 116 816 75 HOH HOH . H 6 HOH A 117 817 305 HOH HOH . H 6 HOH A 118 818 54 HOH HOH . H 6 HOH A 119 819 181 HOH HOH . H 6 HOH A 120 820 125 HOH HOH . H 6 HOH A 121 821 245 HOH HOH . H 6 HOH A 122 822 314 HOH HOH . H 6 HOH A 123 823 348 HOH HOH . H 6 HOH A 124 824 286 HOH HOH . H 6 HOH A 125 825 238 HOH HOH . H 6 HOH A 126 826 342 HOH HOH . H 6 HOH A 127 827 113 HOH HOH . H 6 HOH A 128 828 307 HOH HOH . H 6 HOH A 129 829 303 HOH HOH . H 6 HOH A 130 830 155 HOH HOH . H 6 HOH A 131 831 78 HOH HOH . H 6 HOH A 132 832 218 HOH HOH . H 6 HOH A 133 833 18 HOH HOH . H 6 HOH A 134 834 260 HOH HOH . H 6 HOH A 135 835 264 HOH HOH . H 6 HOH A 136 836 85 HOH HOH . H 6 HOH A 137 837 319 HOH HOH . H 6 HOH A 138 838 175 HOH HOH . H 6 HOH A 139 839 144 HOH HOH . H 6 HOH A 140 840 268 HOH HOH . H 6 HOH A 141 841 58 HOH HOH . H 6 HOH A 142 842 338 HOH HOH . H 6 HOH A 143 843 24 HOH HOH . H 6 HOH A 144 844 153 HOH HOH . H 6 HOH A 145 845 129 HOH HOH . H 6 HOH A 146 846 304 HOH HOH . H 6 HOH A 147 847 360 HOH HOH . H 6 HOH A 148 848 185 HOH HOH . H 6 HOH A 149 849 20 HOH HOH . H 6 HOH A 150 850 119 HOH HOH . H 6 HOH A 151 851 274 HOH HOH . H 6 HOH A 152 852 69 HOH HOH . H 6 HOH A 153 853 320 HOH HOH . H 6 HOH A 154 854 139 HOH HOH . H 6 HOH A 155 855 324 HOH HOH . H 6 HOH A 156 856 355 HOH HOH . H 6 HOH A 157 857 353 HOH HOH . H 6 HOH A 158 858 349 HOH HOH . H 6 HOH A 159 859 309 HOH HOH . H 6 HOH A 160 860 359 HOH HOH . H 6 HOH A 161 861 269 HOH HOH . H 6 HOH A 162 862 335 HOH HOH . H 6 HOH A 163 863 12 HOH HOH . H 6 HOH A 164 864 63 HOH HOH . H 6 HOH A 165 865 308 HOH HOH . H 6 HOH A 166 866 311 HOH HOH . H 6 HOH A 167 867 354 HOH HOH . H 6 HOH A 168 868 333 HOH HOH . H 6 HOH A 169 869 230 HOH HOH . H 6 HOH A 170 870 313 HOH HOH . H 6 HOH A 171 871 334 HOH HOH . H 6 HOH A 172 872 310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 DKV . . . B 2 -24.957 21.137 4.046 1 24.53 ? C10 DKV 601 A 1 HETATM 2 C C13 DKV . . . B 2 -28.177 22.083 3.344 1 29.45 ? C13 DKV 601 A 1 HETATM 3 C C15 DKV . . . B 2 -29.922 22.563 5.007 1 29.22 ? C15 DKV 601 A 1 HETATM 4 C C17 DKV . . . B 2 -27.566 23.007 5.448 1 29.44 ? C17 DKV 601 A 1 HETATM 5 C C20 DKV . . . B 2 -24.506 23.221 1.69 1 35.44 ? C20 DKV 601 A 1 HETATM 6 C C21 DKV . . . B 2 -24.692 23.144 0.204 1 39.93 ? C21 DKV 601 A 1 HETATM 7 C C22 DKV . . . B 2 -23.382 23.21 -0.545 1 42.64 ? C22 DKV 601 A 1 HETATM 8 C C24 DKV . . . B 2 -24.421 21.917 -2.457 1 47.83 ? C24 DKV 601 A 1 HETATM 9 C C28 DKV . . . B 2 -25.395 21.795 -0.14 1 42.61 ? C28 DKV 601 A 1 HETATM 10 C C02 DKV . . . B 2 -23.283 19.039 7.753 1 18.01 ? C02 DKV 601 A 1 HETATM 11 C C03 DKV . . . B 2 -23.38 18.6 6.307 1 19.07 ? C03 DKV 601 A 1 HETATM 12 C C04 DKV . . . B 2 -22.904 17.344 5.896 1 18.8 ? C04 DKV 601 A 1 HETATM 13 C C05 DKV . . . B 2 -23.005 16.969 4.566 1 18.87 ? C05 DKV 601 A 1 HETATM 14 C C07 DKV . . . B 2 -24.025 19.003 3.971 1 20.85 ? C07 DKV 601 A 1 HETATM 15 C C08 DKV . . . B 2 -23.959 19.452 5.298 1 20.71 ? C08 DKV 601 A 1 HETATM 16 C C11 DKV . . . B 2 -25.639 22.512 3.71 1 28.45 ? C11 DKV 601 A 1 HETATM 17 C C12 DKV . . . B 2 -27.16 22.534 4.181 1 29.04 ? C12 DKV 601 A 1 HETATM 18 C C14 DKV . . . B 2 -29.543 22.086 3.73 1 29.47 ? C14 DKV 601 A 1 HETATM 19 C C16 DKV . . . B 2 -28.918 23.029 5.875 1 29.21 ? C16 DKV 601 A 1 HETATM 20 C C23 DKV . . . B 2 -23.654 23.149 -2.06 1 45.47 ? C23 DKV 601 A 1 HETATM 21 C C27 DKV . . . B 2 -25.666 21.709 -1.648 1 45.58 ? C27 DKV 601 A 1 HETATM 22 C C29 DKV . . . B 2 -24.651 20.065 3.19 1 22.57 ? C29 DKV 601 A 1 HETATM 23 F F25 DKV . . . B 2 -23.599 20.804 -2.329 1 49.61 ? F25 DKV 601 A 1 HETATM 24 F F26 DKV . . . B 2 -24.722 21.998 -3.8 1 50.92 ? F26 DKV 601 A 1 HETATM 25 N N06 DKV . . . B 2 -23.547 17.758 3.603 1 19.15 ? N06 DKV 601 A 1 HETATM 26 N N09 DKV . . . B 2 -24.527 20.748 5.329 1 22.38 ? N09 DKV 601 A 1 HETATM 27 O O01 DKV . . . B 2 -23.985 20.031 8.168 1 17.62 -1 O01 DKV 601 A 1 HETATM 28 O O19 DKV . . . B 2 -25.674 22.64 2.299 1 31.81 ? O19 DKV 601 A 1 HETATM 29 O O30 DKV . . . B 2 -22.53 18.449 8.519 1 17.39 ? O30 DKV 601 A 1 HETATM 30 CL CL1 DKV . . . B 2 -26.345 23.61 6.593 1 29.94 ? CL1 DKV 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #