data_6BGY # _model_server_result.job_id LsrMcr0C3boWwwTfXdyPXQ _model_server_result.datetime_utc '2024-11-30 17:47:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 6BGY # _exptl.entry_id 6BGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.22 _cell.angle_gamma 90 _cell.entry_id 6BGY _cell.length_a 116.685 _cell.length_b 61.943 _cell.length_c 46.747 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A OE2 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 B N29 DLJ . A DLJ 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 C MN MN . A MN 602 1_555 K O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 C MN MN . A MN 602 1_555 K O HOH . A HOH 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 148 n n C1 C2 EDO sing 149 n n C1 H11 EDO sing 150 n n C1 H12 EDO sing 151 n n O1 HO1 EDO sing 152 n n C2 O2 EDO sing 153 n n C2 H21 EDO sing 154 n n C2 H22 EDO sing 155 n n O2 HO2 EDO sing 156 n n # _atom_sites.entry_id 6BGY _atom_sites.fract_transf_matrix[1][1] 0.00857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000333 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DLJ A 1 601 1 DLJ LIG . C 3 MN A 1 602 1 MN MN . D 4 EDO A 1 603 501 EDO EDO . E 4 EDO A 1 604 502 EDO EDO . F 4 EDO A 1 605 503 EDO EDO . G 4 EDO A 1 606 504 EDO EDO . H 5 DMS A 1 607 601 DMS DMS . I 5 DMS A 1 608 602 DMS DMS . J 6 GOL A 1 609 701 GOL GOL . K 7 HOH A 1 701 161 HOH HOH . K 7 HOH A 2 702 308 HOH HOH . K 7 HOH A 3 703 287 HOH HOH . K 7 HOH A 4 704 104 HOH HOH . K 7 HOH A 5 705 319 HOH HOH . K 7 HOH A 6 706 440 HOH HOH . K 7 HOH A 7 707 449 HOH HOH . K 7 HOH A 8 708 405 HOH HOH . K 7 HOH A 9 709 392 HOH HOH . K 7 HOH A 10 710 372 HOH HOH . K 7 HOH A 11 711 106 HOH HOH . K 7 HOH A 12 712 407 HOH HOH . K 7 HOH A 13 713 99 HOH HOH . K 7 HOH A 14 714 147 HOH HOH . K 7 HOH A 15 715 323 HOH HOH . K 7 HOH A 16 716 94 HOH HOH . K 7 HOH A 17 717 33 HOH HOH . K 7 HOH A 18 718 119 HOH HOH . K 7 HOH A 19 719 74 HOH HOH . K 7 HOH A 20 720 31 HOH HOH . K 7 HOH A 21 721 420 HOH HOH . K 7 HOH A 22 722 386 HOH HOH . K 7 HOH A 23 723 42 HOH HOH . K 7 HOH A 24 724 371 HOH HOH . K 7 HOH A 25 725 174 HOH HOH . K 7 HOH A 26 726 54 HOH HOH . K 7 HOH A 27 727 438 HOH HOH . K 7 HOH A 28 728 284 HOH HOH . K 7 HOH A 29 729 39 HOH HOH . K 7 HOH A 30 730 32 HOH HOH . K 7 HOH A 31 731 28 HOH HOH . K 7 HOH A 32 732 331 HOH HOH . K 7 HOH A 33 733 328 HOH HOH . K 7 HOH A 34 734 144 HOH HOH . K 7 HOH A 35 735 29 HOH HOH . K 7 HOH A 36 736 3 HOH HOH . K 7 HOH A 37 737 273 HOH HOH . K 7 HOH A 38 738 433 HOH HOH . K 7 HOH A 39 739 53 HOH HOH . K 7 HOH A 40 740 133 HOH HOH . K 7 HOH A 41 741 370 HOH HOH . K 7 HOH A 42 742 7 HOH HOH . K 7 HOH A 43 743 356 HOH HOH . K 7 HOH A 44 744 448 HOH HOH . K 7 HOH A 45 745 329 HOH HOH . K 7 HOH A 46 746 288 HOH HOH . K 7 HOH A 47 747 242 HOH HOH . K 7 HOH A 48 748 83 HOH HOH . K 7 HOH A 49 749 325 HOH HOH . K 7 HOH A 50 750 2 HOH HOH . K 7 HOH A 51 751 132 HOH HOH . K 7 HOH A 52 752 76 HOH HOH . K 7 HOH A 53 753 68 HOH HOH . K 7 HOH A 54 754 61 HOH HOH . K 7 HOH A 55 755 169 HOH HOH . K 7 HOH A 56 756 131 HOH HOH . K 7 HOH A 57 757 102 HOH HOH . K 7 HOH A 58 758 309 HOH HOH . K 7 HOH A 59 759 25 HOH HOH . K 7 HOH A 60 760 447 HOH HOH . K 7 HOH A 61 761 19 HOH HOH . K 7 HOH A 62 762 60 HOH HOH . K 7 HOH A 63 763 340 HOH HOH . K 7 HOH A 64 764 189 HOH HOH . K 7 HOH A 65 765 114 HOH HOH . K 7 HOH A 66 766 20 HOH HOH . K 7 HOH A 67 767 8 HOH HOH . K 7 HOH A 68 768 34 HOH HOH . K 7 HOH A 69 769 9 HOH HOH . K 7 HOH A 70 770 46 HOH HOH . K 7 HOH A 71 771 101 HOH HOH . K 7 HOH A 72 772 92 HOH HOH . K 7 HOH A 73 773 298 HOH HOH . K 7 HOH A 74 774 345 HOH HOH . K 7 HOH A 75 775 159 HOH HOH . K 7 HOH A 76 776 10 HOH HOH . K 7 HOH A 77 777 55 HOH HOH . K 7 HOH A 78 778 51 HOH HOH . K 7 HOH A 79 779 120 HOH HOH . K 7 HOH A 80 780 349 HOH HOH . K 7 HOH A 81 781 225 HOH HOH . K 7 HOH A 82 782 57 HOH HOH . K 7 HOH A 83 783 44 HOH HOH . K 7 HOH A 84 784 12 HOH HOH . K 7 HOH A 85 785 21 HOH HOH . K 7 HOH A 86 786 240 HOH HOH . K 7 HOH A 87 787 47 HOH HOH . K 7 HOH A 88 788 186 HOH HOH . K 7 HOH A 89 789 368 HOH HOH . K 7 HOH A 90 790 18 HOH HOH . K 7 HOH A 91 791 41 HOH HOH . K 7 HOH A 92 792 5 HOH HOH . K 7 HOH A 93 793 285 HOH HOH . K 7 HOH A 94 794 77 HOH HOH . K 7 HOH A 95 795 23 HOH HOH . K 7 HOH A 96 796 4 HOH HOH . K 7 HOH A 97 797 56 HOH HOH . K 7 HOH A 98 798 134 HOH HOH . K 7 HOH A 99 799 316 HOH HOH . K 7 HOH A 100 800 84 HOH HOH . K 7 HOH A 101 801 289 HOH HOH . K 7 HOH A 102 802 184 HOH HOH . K 7 HOH A 103 803 49 HOH HOH . K 7 HOH A 104 804 1 HOH HOH . K 7 HOH A 105 805 37 HOH HOH . K 7 HOH A 106 806 135 HOH HOH . K 7 HOH A 107 807 197 HOH HOH . K 7 HOH A 108 808 113 HOH HOH . K 7 HOH A 109 809 143 HOH HOH . K 7 HOH A 110 810 148 HOH HOH . K 7 HOH A 111 811 6 HOH HOH . K 7 HOH A 112 812 36 HOH HOH . K 7 HOH A 113 813 88 HOH HOH . K 7 HOH A 114 814 63 HOH HOH . K 7 HOH A 115 815 48 HOH HOH . K 7 HOH A 116 816 91 HOH HOH . K 7 HOH A 117 817 126 HOH HOH . K 7 HOH A 118 818 327 HOH HOH . K 7 HOH A 119 819 96 HOH HOH . K 7 HOH A 120 820 26 HOH HOH . K 7 HOH A 121 821 17 HOH HOH . K 7 HOH A 122 822 38 HOH HOH . K 7 HOH A 123 823 443 HOH HOH . K 7 HOH A 124 824 445 HOH HOH . K 7 HOH A 125 825 136 HOH HOH . K 7 HOH A 126 826 296 HOH HOH . K 7 HOH A 127 827 59 HOH HOH . K 7 HOH A 128 828 16 HOH HOH . K 7 HOH A 129 829 213 HOH HOH . K 7 HOH A 130 830 62 HOH HOH . K 7 HOH A 131 831 105 HOH HOH . K 7 HOH A 132 832 90 HOH HOH . K 7 HOH A 133 833 40 HOH HOH . K 7 HOH A 134 834 118 HOH HOH . K 7 HOH A 135 835 50 HOH HOH . K 7 HOH A 136 836 431 HOH HOH . K 7 HOH A 137 837 115 HOH HOH . K 7 HOH A 138 838 71 HOH HOH . K 7 HOH A 139 839 149 HOH HOH . K 7 HOH A 140 840 167 HOH HOH . K 7 HOH A 141 841 342 HOH HOH . K 7 HOH A 142 842 13 HOH HOH . K 7 HOH A 143 843 35 HOH HOH . K 7 HOH A 144 844 66 HOH HOH . K 7 HOH A 145 845 151 HOH HOH . K 7 HOH A 146 846 89 HOH HOH . K 7 HOH A 147 847 332 HOH HOH . K 7 HOH A 148 848 177 HOH HOH . K 7 HOH A 149 849 78 HOH HOH . K 7 HOH A 150 850 318 HOH HOH . K 7 HOH A 151 851 417 HOH HOH . K 7 HOH A 152 852 238 HOH HOH . K 7 HOH A 153 853 69 HOH HOH . K 7 HOH A 154 854 413 HOH HOH . K 7 HOH A 155 855 123 HOH HOH . K 7 HOH A 156 856 127 HOH HOH . K 7 HOH A 157 857 79 HOH HOH . K 7 HOH A 158 858 429 HOH HOH . K 7 HOH A 159 859 73 HOH HOH . K 7 HOH A 160 860 116 HOH HOH . K 7 HOH A 161 861 137 HOH HOH . K 7 HOH A 162 862 142 HOH HOH . K 7 HOH A 163 863 109 HOH HOH . K 7 HOH A 164 864 313 HOH HOH . K 7 HOH A 165 865 158 HOH HOH . K 7 HOH A 166 866 379 HOH HOH . K 7 HOH A 167 867 301 HOH HOH . K 7 HOH A 168 868 297 HOH HOH . K 7 HOH A 169 869 86 HOH HOH . K 7 HOH A 170 870 130 HOH HOH . K 7 HOH A 171 871 129 HOH HOH . K 7 HOH A 172 872 95 HOH HOH . K 7 HOH A 173 873 426 HOH HOH . K 7 HOH A 174 874 320 HOH HOH . K 7 HOH A 175 875 168 HOH HOH . K 7 HOH A 176 876 87 HOH HOH . K 7 HOH A 177 877 85 HOH HOH . K 7 HOH A 178 878 155 HOH HOH . K 7 HOH A 179 879 290 HOH HOH . K 7 HOH A 180 880 266 HOH HOH . K 7 HOH A 181 881 322 HOH HOH . K 7 HOH A 182 882 414 HOH HOH . K 7 HOH A 183 883 404 HOH HOH . K 7 HOH A 184 884 337 HOH HOH . K 7 HOH A 185 885 138 HOH HOH . K 7 HOH A 186 886 70 HOH HOH . K 7 HOH A 187 887 24 HOH HOH . K 7 HOH A 188 888 227 HOH HOH . K 7 HOH A 189 889 128 HOH HOH . K 7 HOH A 190 890 341 HOH HOH . K 7 HOH A 191 891 209 HOH HOH . K 7 HOH A 192 892 376 HOH HOH . K 7 HOH A 193 893 344 HOH HOH . K 7 HOH A 194 894 338 HOH HOH . K 7 HOH A 195 895 293 HOH HOH . K 7 HOH A 196 896 300 HOH HOH . K 7 HOH A 197 897 310 HOH HOH . K 7 HOH A 198 898 72 HOH HOH . K 7 HOH A 199 899 198 HOH HOH . K 7 HOH A 200 900 173 HOH HOH . K 7 HOH A 201 901 334 HOH HOH . K 7 HOH A 202 902 362 HOH HOH . K 7 HOH A 203 903 107 HOH HOH . K 7 HOH A 204 904 243 HOH HOH . K 7 HOH A 205 905 430 HOH HOH . K 7 HOH A 206 906 353 HOH HOH . K 7 HOH A 207 907 350 HOH HOH . K 7 HOH A 208 908 52 HOH HOH . K 7 HOH A 209 909 160 HOH HOH . K 7 HOH A 210 910 401 HOH HOH . K 7 HOH A 211 911 422 HOH HOH . K 7 HOH A 212 912 397 HOH HOH . K 7 HOH A 213 913 217 HOH HOH . K 7 HOH A 214 914 343 HOH HOH . K 7 HOH A 215 915 383 HOH HOH . K 7 HOH A 216 916 195 HOH HOH . K 7 HOH A 217 917 162 HOH HOH . K 7 HOH A 218 918 157 HOH HOH . K 7 HOH A 219 919 444 HOH HOH . K 7 HOH A 220 920 403 HOH HOH . K 7 HOH A 221 921 367 HOH HOH . K 7 HOH A 222 922 450 HOH HOH . K 7 HOH A 223 923 166 HOH HOH . K 7 HOH A 224 924 58 HOH HOH . K 7 HOH A 225 925 121 HOH HOH . K 7 HOH A 226 926 108 HOH HOH . K 7 HOH A 227 927 402 HOH HOH . K 7 HOH A 228 928 446 HOH HOH . K 7 HOH A 229 929 231 HOH HOH . K 7 HOH A 230 930 339 HOH HOH . K 7 HOH A 231 931 375 HOH HOH . K 7 HOH A 232 932 80 HOH HOH . K 7 HOH A 233 933 406 HOH HOH . K 7 HOH A 234 934 428 HOH HOH . K 7 HOH A 235 935 178 HOH HOH . K 7 HOH A 236 936 359 HOH HOH . K 7 HOH A 237 937 317 HOH HOH . K 7 HOH A 238 938 315 HOH HOH . K 7 HOH A 239 939 251 HOH HOH . K 7 HOH A 240 940 216 HOH HOH . K 7 HOH A 241 941 330 HOH HOH . K 7 HOH A 242 942 182 HOH HOH . K 7 HOH A 243 943 170 HOH HOH . K 7 HOH A 244 944 418 HOH HOH . K 7 HOH A 245 945 427 HOH HOH . K 7 HOH A 246 946 204 HOH HOH . K 7 HOH A 247 947 146 HOH HOH . K 7 HOH A 248 948 262 HOH HOH . K 7 HOH A 249 949 387 HOH HOH . K 7 HOH A 250 950 409 HOH HOH . K 7 HOH A 251 951 336 HOH HOH . K 7 HOH A 252 952 380 HOH HOH . K 7 HOH A 253 953 277 HOH HOH . K 7 HOH A 254 954 210 HOH HOH . K 7 HOH A 255 955 258 HOH HOH . K 7 HOH A 256 956 442 HOH HOH . K 7 HOH A 257 957 425 HOH HOH . K 7 HOH A 258 958 45 HOH HOH . K 7 HOH A 259 959 82 HOH HOH . K 7 HOH A 260 960 378 HOH HOH . K 7 HOH A 261 961 97 HOH HOH . K 7 HOH A 262 962 312 HOH HOH . K 7 HOH A 263 963 421 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -23.942 7.934 -9.647 1 49.41 ? C1 EDO 606 A 1 HETATM 2 O O1 EDO . . . G 4 -25.32 7.904 -10.042 1 48.22 ? O1 EDO 606 A 1 HETATM 3 C C2 EDO . . . G 4 -23.12 8.193 -10.895 1 51.07 ? C2 EDO 606 A 1 HETATM 4 O O2 EDO . . . G 4 -23.774 7.495 -11.96 1 52.27 ? O2 EDO 606 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 832 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #