data_6BGZ
#
_model_server_result.job_id            nf3ST1voi1tIdRFzEA4i3g 
_model_server_result.datetime_utc      '2024-11-24 01:41:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    6BGZ 
#
_exptl.entry_id    6BGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.26 
_cell.angle_gamma         90 
_cell.entry_id            6BGZ 
_cell.length_a            116.963 
_cell.length_b            62.198 
_cell.length_c            46.779 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc4 B N29 DNV . A DNV 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc5 C MN MN . A MN 602 1_555 F O HOH . A HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc6 C MN MN . A MN 602 1_555 F O HOH . A HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     6BGZ 
_atom_sites.fract_transf_matrix[1][1]    0.00855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000337 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016078 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DNV A 1 601 1 DNV LIG . 
C 3 MN A 1 602 1 MN MN . 
D 4 GOL A 1 603 401 GOL GOL . 
E 4 GOL A 1 604 402 GOL GOL . 
F 5 HOH A 1 701 344 HOH HOH . 
F 5 HOH A 2 702 323 HOH HOH . 
F 5 HOH A 3 703 358 HOH HOH . 
F 5 HOH A 4 704 238 HOH HOH . 
F 5 HOH A 5 705 161 HOH HOH . 
F 5 HOH A 6 706 33 HOH HOH . 
F 5 HOH A 7 707 39 HOH HOH . 
F 5 HOH A 8 708 189 HOH HOH . 
F 5 HOH A 9 709 35 HOH HOH . 
F 5 HOH A 10 710 174 HOH HOH . 
F 5 HOH A 11 711 7 HOH HOH . 
F 5 HOH A 12 712 3 HOH HOH . 
F 5 HOH A 13 713 147 HOH HOH . 
F 5 HOH A 14 714 99 HOH HOH . 
F 5 HOH A 15 715 355 HOH HOH . 
F 5 HOH A 16 716 300 HOH HOH . 
F 5 HOH A 17 717 273 HOH HOH . 
F 5 HOH A 18 718 186 HOH HOH . 
F 5 HOH A 19 719 351 HOH HOH . 
F 5 HOH A 20 720 74 HOH HOH . 
F 5 HOH A 21 721 53 HOH HOH . 
F 5 HOH A 22 722 119 HOH HOH . 
F 5 HOH A 23 723 31 HOH HOH . 
F 5 HOH A 24 724 198 HOH HOH . 
F 5 HOH A 25 725 309 HOH HOH . 
F 5 HOH A 26 726 42 HOH HOH . 
F 5 HOH A 27 727 101 HOH HOH . 
F 5 HOH A 28 728 288 HOH HOH . 
F 5 HOH A 29 729 132 HOH HOH . 
F 5 HOH A 30 730 54 HOH HOH . 
F 5 HOH A 31 731 25 HOH HOH . 
F 5 HOH A 32 732 32 HOH HOH . 
F 5 HOH A 33 733 92 HOH HOH . 
F 5 HOH A 34 734 346 HOH HOH . 
F 5 HOH A 35 735 347 HOH HOH . 
F 5 HOH A 36 736 331 HOH HOH . 
F 5 HOH A 37 737 51 HOH HOH . 
F 5 HOH A 38 738 94 HOH HOH . 
F 5 HOH A 39 739 19 HOH HOH . 
F 5 HOH A 40 740 316 HOH HOH . 
F 5 HOH A 41 741 133 HOH HOH . 
F 5 HOH A 42 742 29 HOH HOH . 
F 5 HOH A 43 743 83 HOH HOH . 
F 5 HOH A 44 744 148 HOH HOH . 
F 5 HOH A 45 745 26 HOH HOH . 
F 5 HOH A 46 746 28 HOH HOH . 
F 5 HOH A 47 747 61 HOH HOH . 
F 5 HOH A 48 748 289 HOH HOH . 
F 5 HOH A 49 749 332 HOH HOH . 
F 5 HOH A 50 750 151 HOH HOH . 
F 5 HOH A 51 751 10 HOH HOH . 
F 5 HOH A 52 752 144 HOH HOH . 
F 5 HOH A 53 753 76 HOH HOH . 
F 5 HOH A 54 754 294 HOH HOH . 
F 5 HOH A 55 755 301 HOH HOH . 
F 5 HOH A 56 756 159 HOH HOH . 
F 5 HOH A 57 757 337 HOH HOH . 
F 5 HOH A 58 758 213 HOH HOH . 
F 5 HOH A 59 759 131 HOH HOH . 
F 5 HOH A 60 760 37 HOH HOH . 
F 5 HOH A 61 761 2 HOH HOH . 
F 5 HOH A 62 762 338 HOH HOH . 
F 5 HOH A 63 763 336 HOH HOH . 
F 5 HOH A 64 764 135 HOH HOH . 
F 5 HOH A 65 765 285 HOH HOH . 
F 5 HOH A 66 766 55 HOH HOH . 
F 5 HOH A 67 767 60 HOH HOH . 
F 5 HOH A 68 768 59 HOH HOH . 
F 5 HOH A 69 769 44 HOH HOH . 
F 5 HOH A 70 770 5 HOH HOH . 
F 5 HOH A 71 771 242 HOH HOH . 
F 5 HOH A 72 772 9 HOH HOH . 
F 5 HOH A 73 773 197 HOH HOH . 
F 5 HOH A 74 774 240 HOH HOH . 
F 5 HOH A 75 775 153 HOH HOH . 
F 5 HOH A 76 776 8 HOH HOH . 
F 5 HOH A 77 777 105 HOH HOH . 
F 5 HOH A 78 778 1 HOH HOH . 
F 5 HOH A 79 779 89 HOH HOH . 
F 5 HOH A 80 780 21 HOH HOH . 
F 5 HOH A 81 781 339 HOH HOH . 
F 5 HOH A 82 782 88 HOH HOH . 
F 5 HOH A 83 783 325 HOH HOH . 
F 5 HOH A 84 784 349 HOH HOH . 
F 5 HOH A 85 785 56 HOH HOH . 
F 5 HOH A 86 786 71 HOH HOH . 
F 5 HOH A 87 787 69 HOH HOH . 
F 5 HOH A 88 788 57 HOH HOH . 
F 5 HOH A 89 789 225 HOH HOH . 
F 5 HOH A 90 790 41 HOH HOH . 
F 5 HOH A 91 791 149 HOH HOH . 
F 5 HOH A 92 792 75 HOH HOH . 
F 5 HOH A 93 793 40 HOH HOH . 
F 5 HOH A 94 794 46 HOH HOH . 
F 5 HOH A 95 795 77 HOH HOH . 
F 5 HOH A 96 796 296 HOH HOH . 
F 5 HOH A 97 797 4 HOH HOH . 
F 5 HOH A 98 798 126 HOH HOH . 
F 5 HOH A 99 799 120 HOH HOH . 
F 5 HOH A 100 800 320 HOH HOH . 
F 5 HOH A 101 801 47 HOH HOH . 
F 5 HOH A 102 802 304 HOH HOH . 
F 5 HOH A 103 803 84 HOH HOH . 
F 5 HOH A 104 804 68 HOH HOH . 
F 5 HOH A 105 805 143 HOH HOH . 
F 5 HOH A 106 806 16 HOH HOH . 
F 5 HOH A 107 807 110 HOH HOH . 
F 5 HOH A 108 808 34 HOH HOH . 
F 5 HOH A 109 809 13 HOH HOH . 
F 5 HOH A 110 810 334 HOH HOH . 
F 5 HOH A 111 811 6 HOH HOH . 
F 5 HOH A 112 812 36 HOH HOH . 
F 5 HOH A 113 813 365 HOH HOH . 
F 5 HOH A 114 814 49 HOH HOH . 
F 5 HOH A 115 815 130 HOH HOH . 
F 5 HOH A 116 816 78 HOH HOH . 
F 5 HOH A 117 817 17 HOH HOH . 
F 5 HOH A 118 818 73 HOH HOH . 
F 5 HOH A 119 819 91 HOH HOH . 
F 5 HOH A 120 820 209 HOH HOH . 
F 5 HOH A 121 821 18 HOH HOH . 
F 5 HOH A 122 822 48 HOH HOH . 
F 5 HOH A 123 823 113 HOH HOH . 
F 5 HOH A 124 824 63 HOH HOH . 
F 5 HOH A 125 825 62 HOH HOH . 
F 5 HOH A 126 826 298 HOH HOH . 
F 5 HOH A 127 827 137 HOH HOH . 
F 5 HOH A 128 828 90 HOH HOH . 
F 5 HOH A 129 829 311 HOH HOH . 
F 5 HOH A 130 830 340 HOH HOH . 
F 5 HOH A 131 831 134 HOH HOH . 
F 5 HOH A 132 832 38 HOH HOH . 
F 5 HOH A 133 833 297 HOH HOH . 
F 5 HOH A 134 834 352 HOH HOH . 
F 5 HOH A 135 835 85 HOH HOH . 
F 5 HOH A 136 836 95 HOH HOH . 
F 5 HOH A 137 837 87 HOH HOH . 
F 5 HOH A 138 838 127 HOH HOH . 
F 5 HOH A 139 839 104 HOH HOH . 
F 5 HOH A 140 840 116 HOH HOH . 
F 5 HOH A 141 841 79 HOH HOH . 
F 5 HOH A 142 842 102 HOH HOH . 
F 5 HOH A 143 843 175 HOH HOH . 
F 5 HOH A 144 844 350 HOH HOH . 
F 5 HOH A 145 845 118 HOH HOH . 
F 5 HOH A 146 846 12 HOH HOH . 
F 5 HOH A 147 847 123 HOH HOH . 
F 5 HOH A 148 848 342 HOH HOH . 
F 5 HOH A 149 849 290 HOH HOH . 
F 5 HOH A 150 850 177 HOH HOH . 
F 5 HOH A 151 851 227 HOH HOH . 
F 5 HOH A 152 852 368 HOH HOH . 
F 5 HOH A 153 853 293 HOH HOH . 
F 5 HOH A 154 854 313 HOH HOH . 
F 5 HOH A 155 855 66 HOH HOH . 
F 5 HOH A 156 856 86 HOH HOH . 
F 5 HOH A 157 857 109 HOH HOH . 
F 5 HOH A 158 858 348 HOH HOH . 
F 5 HOH A 159 859 366 HOH HOH . 
F 5 HOH A 160 860 50 HOH HOH . 
F 5 HOH A 161 861 128 HOH HOH . 
F 5 HOH A 162 862 360 HOH HOH . 
F 5 HOH A 163 863 333 HOH HOH . 
F 5 HOH A 164 864 362 HOH HOH . 
F 5 HOH A 165 865 24 HOH HOH . 
F 5 HOH A 166 866 70 HOH HOH . 
F 5 HOH A 167 867 314 HOH HOH . 
F 5 HOH A 168 868 357 HOH HOH . 
F 5 HOH A 169 869 160 HOH HOH . 
F 5 HOH A 170 870 318 HOH HOH . 
F 5 HOH A 171 871 162 HOH HOH . 
F 5 HOH A 172 872 370 HOH HOH . 
F 5 HOH A 173 873 330 HOH HOH . 
F 5 HOH A 174 874 243 HOH HOH . 
F 5 HOH A 175 875 136 HOH HOH . 
F 5 HOH A 176 876 172 HOH HOH . 
F 5 HOH A 177 877 275 HOH HOH . 
F 5 HOH A 178 878 217 HOH HOH . 
F 5 HOH A 179 879 306 HOH HOH . 
F 5 HOH A 180 880 196 HOH HOH . 
F 5 HOH A 181 881 345 HOH HOH . 
F 5 HOH A 182 882 204 HOH HOH . 
F 5 HOH A 183 883 231 HOH HOH . 
F 5 HOH A 184 884 58 HOH HOH . 
F 5 HOH A 185 885 364 HOH HOH . 
F 5 HOH A 186 886 341 HOH HOH . 
F 5 HOH A 187 887 310 HOH HOH . 
F 5 HOH A 188 888 80 HOH HOH . 
F 5 HOH A 189 889 121 HOH HOH . 
F 5 HOH A 190 890 187 HOH HOH . 
F 5 HOH A 191 891 317 HOH HOH . 
F 5 HOH A 192 892 353 HOH HOH . 
F 5 HOH A 193 893 72 HOH HOH . 
F 5 HOH A 194 894 303 HOH HOH . 
F 5 HOH A 195 895 361 HOH HOH . 
F 5 HOH A 196 896 146 HOH HOH . 
F 5 HOH A 197 897 251 HOH HOH . 
F 5 HOH A 198 898 369 HOH HOH . 
F 5 HOH A 199 899 208 HOH HOH . 
F 5 HOH A 200 900 194 HOH HOH . 
F 5 HOH A 201 901 45 HOH HOH . 
F 5 HOH A 202 902 82 HOH HOH . 
F 5 HOH A 203 903 354 HOH HOH . 
F 5 HOH A 204 904 343 HOH HOH . 
F 5 HOH A 205 905 359 HOH HOH . 
F 5 HOH A 206 906 312 HOH HOH . 
F 5 HOH A 207 907 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -26.743 18.323 -8.909 1 62.92 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . D 4 -27.015 19.349 -8.008 1 63.42 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . D 4 -26.425 18.991 -10.268 1 62.23 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . D 4 -25.213 19.664 -10.248 1 61.57 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . D 4 -26.435 17.834 -11.292 1 62.25 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . D 4 -26.122 18.393 -12.528 1 62.28 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           736 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           6 
#