data_6BGZ # _model_server_result.job_id qVY5wiVdTLkapDks1Gn0WA _model_server_result.datetime_utc '2024-11-07 16:04:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6BGZ # _exptl.entry_id 6BGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.26 _cell.angle_gamma 90 _cell.entry_id 6BGZ _cell.length_a 116.963 _cell.length_b 62.198 _cell.length_c 46.779 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 B N29 DNV . A DNV 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 C MN MN . A MN 602 1_555 F O HOH . A HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 C MN MN . A MN 602 1_555 F O HOH . A HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 6BGZ _atom_sites.fract_transf_matrix[1][1] 0.00855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000337 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DNV A 1 601 1 DNV LIG . C 3 MN A 1 602 1 MN MN . D 4 GOL A 1 603 401 GOL GOL . E 4 GOL A 1 604 402 GOL GOL . F 5 HOH A 1 701 344 HOH HOH . F 5 HOH A 2 702 323 HOH HOH . F 5 HOH A 3 703 358 HOH HOH . F 5 HOH A 4 704 238 HOH HOH . F 5 HOH A 5 705 161 HOH HOH . F 5 HOH A 6 706 33 HOH HOH . F 5 HOH A 7 707 39 HOH HOH . F 5 HOH A 8 708 189 HOH HOH . F 5 HOH A 9 709 35 HOH HOH . F 5 HOH A 10 710 174 HOH HOH . F 5 HOH A 11 711 7 HOH HOH . F 5 HOH A 12 712 3 HOH HOH . F 5 HOH A 13 713 147 HOH HOH . F 5 HOH A 14 714 99 HOH HOH . F 5 HOH A 15 715 355 HOH HOH . F 5 HOH A 16 716 300 HOH HOH . F 5 HOH A 17 717 273 HOH HOH . F 5 HOH A 18 718 186 HOH HOH . F 5 HOH A 19 719 351 HOH HOH . F 5 HOH A 20 720 74 HOH HOH . F 5 HOH A 21 721 53 HOH HOH . F 5 HOH A 22 722 119 HOH HOH . F 5 HOH A 23 723 31 HOH HOH . F 5 HOH A 24 724 198 HOH HOH . F 5 HOH A 25 725 309 HOH HOH . F 5 HOH A 26 726 42 HOH HOH . F 5 HOH A 27 727 101 HOH HOH . F 5 HOH A 28 728 288 HOH HOH . F 5 HOH A 29 729 132 HOH HOH . F 5 HOH A 30 730 54 HOH HOH . F 5 HOH A 31 731 25 HOH HOH . F 5 HOH A 32 732 32 HOH HOH . F 5 HOH A 33 733 92 HOH HOH . F 5 HOH A 34 734 346 HOH HOH . F 5 HOH A 35 735 347 HOH HOH . F 5 HOH A 36 736 331 HOH HOH . F 5 HOH A 37 737 51 HOH HOH . F 5 HOH A 38 738 94 HOH HOH . F 5 HOH A 39 739 19 HOH HOH . F 5 HOH A 40 740 316 HOH HOH . F 5 HOH A 41 741 133 HOH HOH . F 5 HOH A 42 742 29 HOH HOH . F 5 HOH A 43 743 83 HOH HOH . F 5 HOH A 44 744 148 HOH HOH . F 5 HOH A 45 745 26 HOH HOH . F 5 HOH A 46 746 28 HOH HOH . F 5 HOH A 47 747 61 HOH HOH . F 5 HOH A 48 748 289 HOH HOH . F 5 HOH A 49 749 332 HOH HOH . F 5 HOH A 50 750 151 HOH HOH . F 5 HOH A 51 751 10 HOH HOH . F 5 HOH A 52 752 144 HOH HOH . F 5 HOH A 53 753 76 HOH HOH . F 5 HOH A 54 754 294 HOH HOH . F 5 HOH A 55 755 301 HOH HOH . F 5 HOH A 56 756 159 HOH HOH . F 5 HOH A 57 757 337 HOH HOH . F 5 HOH A 58 758 213 HOH HOH . F 5 HOH A 59 759 131 HOH HOH . F 5 HOH A 60 760 37 HOH HOH . F 5 HOH A 61 761 2 HOH HOH . F 5 HOH A 62 762 338 HOH HOH . F 5 HOH A 63 763 336 HOH HOH . F 5 HOH A 64 764 135 HOH HOH . F 5 HOH A 65 765 285 HOH HOH . F 5 HOH A 66 766 55 HOH HOH . F 5 HOH A 67 767 60 HOH HOH . F 5 HOH A 68 768 59 HOH HOH . F 5 HOH A 69 769 44 HOH HOH . F 5 HOH A 70 770 5 HOH HOH . F 5 HOH A 71 771 242 HOH HOH . F 5 HOH A 72 772 9 HOH HOH . F 5 HOH A 73 773 197 HOH HOH . F 5 HOH A 74 774 240 HOH HOH . F 5 HOH A 75 775 153 HOH HOH . F 5 HOH A 76 776 8 HOH HOH . F 5 HOH A 77 777 105 HOH HOH . F 5 HOH A 78 778 1 HOH HOH . F 5 HOH A 79 779 89 HOH HOH . F 5 HOH A 80 780 21 HOH HOH . F 5 HOH A 81 781 339 HOH HOH . F 5 HOH A 82 782 88 HOH HOH . F 5 HOH A 83 783 325 HOH HOH . F 5 HOH A 84 784 349 HOH HOH . F 5 HOH A 85 785 56 HOH HOH . F 5 HOH A 86 786 71 HOH HOH . F 5 HOH A 87 787 69 HOH HOH . F 5 HOH A 88 788 57 HOH HOH . F 5 HOH A 89 789 225 HOH HOH . F 5 HOH A 90 790 41 HOH HOH . F 5 HOH A 91 791 149 HOH HOH . F 5 HOH A 92 792 75 HOH HOH . F 5 HOH A 93 793 40 HOH HOH . F 5 HOH A 94 794 46 HOH HOH . F 5 HOH A 95 795 77 HOH HOH . F 5 HOH A 96 796 296 HOH HOH . F 5 HOH A 97 797 4 HOH HOH . F 5 HOH A 98 798 126 HOH HOH . F 5 HOH A 99 799 120 HOH HOH . F 5 HOH A 100 800 320 HOH HOH . F 5 HOH A 101 801 47 HOH HOH . F 5 HOH A 102 802 304 HOH HOH . F 5 HOH A 103 803 84 HOH HOH . F 5 HOH A 104 804 68 HOH HOH . F 5 HOH A 105 805 143 HOH HOH . F 5 HOH A 106 806 16 HOH HOH . F 5 HOH A 107 807 110 HOH HOH . F 5 HOH A 108 808 34 HOH HOH . F 5 HOH A 109 809 13 HOH HOH . F 5 HOH A 110 810 334 HOH HOH . F 5 HOH A 111 811 6 HOH HOH . F 5 HOH A 112 812 36 HOH HOH . F 5 HOH A 113 813 365 HOH HOH . F 5 HOH A 114 814 49 HOH HOH . F 5 HOH A 115 815 130 HOH HOH . F 5 HOH A 116 816 78 HOH HOH . F 5 HOH A 117 817 17 HOH HOH . F 5 HOH A 118 818 73 HOH HOH . F 5 HOH A 119 819 91 HOH HOH . F 5 HOH A 120 820 209 HOH HOH . F 5 HOH A 121 821 18 HOH HOH . F 5 HOH A 122 822 48 HOH HOH . F 5 HOH A 123 823 113 HOH HOH . F 5 HOH A 124 824 63 HOH HOH . F 5 HOH A 125 825 62 HOH HOH . F 5 HOH A 126 826 298 HOH HOH . F 5 HOH A 127 827 137 HOH HOH . F 5 HOH A 128 828 90 HOH HOH . F 5 HOH A 129 829 311 HOH HOH . F 5 HOH A 130 830 340 HOH HOH . F 5 HOH A 131 831 134 HOH HOH . F 5 HOH A 132 832 38 HOH HOH . F 5 HOH A 133 833 297 HOH HOH . F 5 HOH A 134 834 352 HOH HOH . F 5 HOH A 135 835 85 HOH HOH . F 5 HOH A 136 836 95 HOH HOH . F 5 HOH A 137 837 87 HOH HOH . F 5 HOH A 138 838 127 HOH HOH . F 5 HOH A 139 839 104 HOH HOH . F 5 HOH A 140 840 116 HOH HOH . F 5 HOH A 141 841 79 HOH HOH . F 5 HOH A 142 842 102 HOH HOH . F 5 HOH A 143 843 175 HOH HOH . F 5 HOH A 144 844 350 HOH HOH . F 5 HOH A 145 845 118 HOH HOH . F 5 HOH A 146 846 12 HOH HOH . F 5 HOH A 147 847 123 HOH HOH . F 5 HOH A 148 848 342 HOH HOH . F 5 HOH A 149 849 290 HOH HOH . F 5 HOH A 150 850 177 HOH HOH . F 5 HOH A 151 851 227 HOH HOH . F 5 HOH A 152 852 368 HOH HOH . F 5 HOH A 153 853 293 HOH HOH . F 5 HOH A 154 854 313 HOH HOH . F 5 HOH A 155 855 66 HOH HOH . F 5 HOH A 156 856 86 HOH HOH . F 5 HOH A 157 857 109 HOH HOH . F 5 HOH A 158 858 348 HOH HOH . F 5 HOH A 159 859 366 HOH HOH . F 5 HOH A 160 860 50 HOH HOH . F 5 HOH A 161 861 128 HOH HOH . F 5 HOH A 162 862 360 HOH HOH . F 5 HOH A 163 863 333 HOH HOH . F 5 HOH A 164 864 362 HOH HOH . F 5 HOH A 165 865 24 HOH HOH . F 5 HOH A 166 866 70 HOH HOH . F 5 HOH A 167 867 314 HOH HOH . F 5 HOH A 168 868 357 HOH HOH . F 5 HOH A 169 869 160 HOH HOH . F 5 HOH A 170 870 318 HOH HOH . F 5 HOH A 171 871 162 HOH HOH . F 5 HOH A 172 872 370 HOH HOH . F 5 HOH A 173 873 330 HOH HOH . F 5 HOH A 174 874 243 HOH HOH . F 5 HOH A 175 875 136 HOH HOH . F 5 HOH A 176 876 172 HOH HOH . F 5 HOH A 177 877 275 HOH HOH . F 5 HOH A 178 878 217 HOH HOH . F 5 HOH A 179 879 306 HOH HOH . F 5 HOH A 180 880 196 HOH HOH . F 5 HOH A 181 881 345 HOH HOH . F 5 HOH A 182 882 204 HOH HOH . F 5 HOH A 183 883 231 HOH HOH . F 5 HOH A 184 884 58 HOH HOH . F 5 HOH A 185 885 364 HOH HOH . F 5 HOH A 186 886 341 HOH HOH . F 5 HOH A 187 887 310 HOH HOH . F 5 HOH A 188 888 80 HOH HOH . F 5 HOH A 189 889 121 HOH HOH . F 5 HOH A 190 890 187 HOH HOH . F 5 HOH A 191 891 317 HOH HOH . F 5 HOH A 192 892 353 HOH HOH . F 5 HOH A 193 893 72 HOH HOH . F 5 HOH A 194 894 303 HOH HOH . F 5 HOH A 195 895 361 HOH HOH . F 5 HOH A 196 896 146 HOH HOH . F 5 HOH A 197 897 251 HOH HOH . F 5 HOH A 198 898 369 HOH HOH . F 5 HOH A 199 899 208 HOH HOH . F 5 HOH A 200 900 194 HOH HOH . F 5 HOH A 201 901 45 HOH HOH . F 5 HOH A 202 902 82 HOH HOH . F 5 HOH A 203 903 354 HOH HOH . F 5 HOH A 204 904 343 HOH HOH . F 5 HOH A 205 905 359 HOH HOH . F 5 HOH A 206 906 312 HOH HOH . F 5 HOH A 207 907 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -26.743 18.323 -8.909 1 62.92 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . D 4 -27.015 19.349 -8.008 1 63.42 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . D 4 -26.425 18.991 -10.268 1 62.23 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . D 4 -25.213 19.664 -10.248 1 61.57 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . D 4 -26.435 17.834 -11.292 1 62.25 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . D 4 -26.122 18.393 -12.528 1 62.28 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #