data_6BH1 # _model_server_result.job_id B7zlAi9Gg3UK7Qm4bP1pFw _model_server_result.datetime_utc '2024-11-25 05:23:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bh1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6BH1 # _exptl.entry_id 6BH1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.47 _cell.angle_gamma 90 _cell.entry_id 6BH1 _cell.length_a 116.028 _cell.length_b 61.786 _cell.length_c 46.643 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BH1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 B N28 DQG . A DQG 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc5 C MN MN . A MN 602 1_555 G O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 C MN MN . A MN 602 1_555 G O HOH . A HOH 757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 148 n n C1 C2 EDO sing 149 n n C1 H11 EDO sing 150 n n C1 H12 EDO sing 151 n n O1 HO1 EDO sing 152 n n C2 O2 EDO sing 153 n n C2 H21 EDO sing 154 n n C2 H22 EDO sing 155 n n O2 HO2 EDO sing 156 n n # _atom_sites.entry_id 6BH1 _atom_sites.fract_transf_matrix[1][1] 0.008619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000373 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQG A 1 601 1 DQG LIG . C 3 MN A 1 602 1 MN MN . D 4 DMS A 1 603 501 DMS DMS . E 5 EDO A 1 604 601 EDO EDO . F 5 EDO A 1 605 602 EDO EDO . G 6 HOH A 1 701 238 HOH HOH . G 6 HOH A 2 702 147 HOH HOH . G 6 HOH A 3 703 39 HOH HOH . G 6 HOH A 4 704 429 HOH HOH . G 6 HOH A 5 705 426 HOH HOH . G 6 HOH A 6 706 427 HOH HOH . G 6 HOH A 7 707 3 HOH HOH . G 6 HOH A 8 708 74 HOH HOH . G 6 HOH A 9 709 31 HOH HOH . G 6 HOH A 10 710 42 HOH HOH . G 6 HOH A 11 711 10 HOH HOH . G 6 HOH A 12 712 407 HOH HOH . G 6 HOH A 13 713 19 HOH HOH . G 6 HOH A 14 714 71 HOH HOH . G 6 HOH A 15 715 189 HOH HOH . G 6 HOH A 16 716 91 HOH HOH . G 6 HOH A 17 717 414 HOH HOH . G 6 HOH A 18 718 131 HOH HOH . G 6 HOH A 19 719 289 HOH HOH . G 6 HOH A 20 720 105 HOH HOH . G 6 HOH A 21 721 7 HOH HOH . G 6 HOH A 22 722 25 HOH HOH . G 6 HOH A 23 723 32 HOH HOH . G 6 HOH A 24 724 2 HOH HOH . G 6 HOH A 25 725 77 HOH HOH . G 6 HOH A 26 726 33 HOH HOH . G 6 HOH A 27 727 54 HOH HOH . G 6 HOH A 28 728 1 HOH HOH . G 6 HOH A 29 729 26 HOH HOH . G 6 HOH A 30 730 62 HOH HOH . G 6 HOH A 31 731 149 HOH HOH . G 6 HOH A 32 732 288 HOH HOH . G 6 HOH A 33 733 28 HOH HOH . G 6 HOH A 34 734 68 HOH HOH . G 6 HOH A 35 735 4 HOH HOH . G 6 HOH A 36 736 242 HOH HOH . G 6 HOH A 37 737 23 HOH HOH . G 6 HOH A 38 738 34 HOH HOH . G 6 HOH A 39 739 5 HOH HOH . G 6 HOH A 40 740 424 HOH HOH . G 6 HOH A 41 741 285 HOH HOH . G 6 HOH A 42 742 9 HOH HOH . G 6 HOH A 43 743 56 HOH HOH . G 6 HOH A 44 744 259 HOH HOH . G 6 HOH A 45 745 94 HOH HOH . G 6 HOH A 46 746 101 HOH HOH . G 6 HOH A 47 747 18 HOH HOH . G 6 HOH A 48 748 20 HOH HOH . G 6 HOH A 49 749 8 HOH HOH . G 6 HOH A 50 750 83 HOH HOH . G 6 HOH A 51 751 37 HOH HOH . G 6 HOH A 52 752 55 HOH HOH . G 6 HOH A 53 753 404 HOH HOH . G 6 HOH A 54 754 120 HOH HOH . G 6 HOH A 55 755 331 HOH HOH . G 6 HOH A 56 756 29 HOH HOH . G 6 HOH A 57 757 298 HOH HOH . G 6 HOH A 58 758 57 HOH HOH . G 6 HOH A 59 759 297 HOH HOH . G 6 HOH A 60 760 84 HOH HOH . G 6 HOH A 61 761 412 HOH HOH . G 6 HOH A 62 762 109 HOH HOH . G 6 HOH A 63 763 21 HOH HOH . G 6 HOH A 64 764 60 HOH HOH . G 6 HOH A 65 765 73 HOH HOH . G 6 HOH A 66 766 40 HOH HOH . G 6 HOH A 67 767 216 HOH HOH . G 6 HOH A 68 768 13 HOH HOH . G 6 HOH A 69 769 49 HOH HOH . G 6 HOH A 70 770 119 HOH HOH . G 6 HOH A 71 771 88 HOH HOH . G 6 HOH A 72 772 78 HOH HOH . G 6 HOH A 73 773 51 HOH HOH . G 6 HOH A 74 774 95 HOH HOH . G 6 HOH A 75 775 36 HOH HOH . G 6 HOH A 76 776 41 HOH HOH . G 6 HOH A 77 777 348 HOH HOH . G 6 HOH A 78 778 290 HOH HOH . G 6 HOH A 79 779 92 HOH HOH . G 6 HOH A 80 780 6 HOH HOH . G 6 HOH A 81 781 16 HOH HOH . G 6 HOH A 82 782 284 HOH HOH . G 6 HOH A 83 783 87 HOH HOH . G 6 HOH A 84 784 90 HOH HOH . G 6 HOH A 85 785 296 HOH HOH . G 6 HOH A 86 786 129 HOH HOH . G 6 HOH A 87 787 127 HOH HOH . G 6 HOH A 88 788 116 HOH HOH . G 6 HOH A 89 789 376 HOH HOH . G 6 HOH A 90 790 17 HOH HOH . G 6 HOH A 91 791 70 HOH HOH . G 6 HOH A 92 792 143 HOH HOH . G 6 HOH A 93 793 349 HOH HOH . G 6 HOH A 94 794 213 HOH HOH . G 6 HOH A 95 795 96 HOH HOH . G 6 HOH A 96 796 61 HOH HOH . G 6 HOH A 97 797 85 HOH HOH . G 6 HOH A 98 798 35 HOH HOH . G 6 HOH A 99 799 130 HOH HOH . G 6 HOH A 100 800 63 HOH HOH . G 6 HOH A 101 801 59 HOH HOH . G 6 HOH A 102 802 374 HOH HOH . G 6 HOH A 103 803 198 HOH HOH . G 6 HOH A 104 804 266 HOH HOH . G 6 HOH A 105 805 123 HOH HOH . G 6 HOH A 106 806 411 HOH HOH . G 6 HOH A 107 807 79 HOH HOH . G 6 HOH A 108 808 38 HOH HOH . G 6 HOH A 109 809 425 HOH HOH . G 6 HOH A 110 810 430 HOH HOH . G 6 HOH A 111 811 239 HOH HOH . G 6 HOH A 112 812 134 HOH HOH . G 6 HOH A 113 813 113 HOH HOH . G 6 HOH A 114 814 420 HOH HOH . G 6 HOH A 115 815 345 HOH HOH . G 6 HOH A 116 816 175 HOH HOH . G 6 HOH A 117 817 431 HOH HOH . G 6 HOH A 118 818 66 HOH HOH . G 6 HOH A 119 819 162 HOH HOH . G 6 HOH A 120 820 24 HOH HOH . G 6 HOH A 121 821 138 HOH HOH . G 6 HOH A 122 822 107 HOH HOH . G 6 HOH A 123 823 50 HOH HOH . G 6 HOH A 124 824 396 HOH HOH . G 6 HOH A 125 825 209 HOH HOH . G 6 HOH A 126 826 307 HOH HOH . G 6 HOH A 127 827 167 HOH HOH . G 6 HOH A 128 828 346 HOH HOH . G 6 HOH A 129 829 416 HOH HOH . G 6 HOH A 130 830 421 HOH HOH . G 6 HOH A 131 831 293 HOH HOH . G 6 HOH A 132 832 418 HOH HOH . G 6 HOH A 133 833 99 HOH HOH . G 6 HOH A 134 834 422 HOH HOH . G 6 HOH A 135 835 339 HOH HOH . G 6 HOH A 136 836 413 HOH HOH . G 6 HOH A 137 837 397 HOH HOH . G 6 HOH A 138 838 306 HOH HOH . G 6 HOH A 139 839 136 HOH HOH . G 6 HOH A 140 840 58 HOH HOH . G 6 HOH A 141 841 334 HOH HOH . G 6 HOH A 142 842 367 HOH HOH . G 6 HOH A 143 843 187 HOH HOH . G 6 HOH A 144 844 359 HOH HOH . G 6 HOH A 145 845 373 HOH HOH . G 6 HOH A 146 846 417 HOH HOH . G 6 HOH A 147 847 353 HOH HOH . G 6 HOH A 148 848 406 HOH HOH . G 6 HOH A 149 849 410 HOH HOH . G 6 HOH A 150 850 204 HOH HOH . G 6 HOH A 151 851 196 HOH HOH . G 6 HOH A 152 852 365 HOH HOH . G 6 HOH A 153 853 415 HOH HOH . G 6 HOH A 154 854 146 HOH HOH . G 6 HOH A 155 855 72 HOH HOH . G 6 HOH A 156 856 419 HOH HOH . G 6 HOH A 157 857 121 HOH HOH . G 6 HOH A 158 858 379 HOH HOH . G 6 HOH A 159 859 161 HOH HOH . G 6 HOH A 160 860 409 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -30.68 -1.904 -1.768 1 60.63 ? C1 EDO 605 A 1 HETATM 2 O O1 EDO . . . F 5 -30.752 -3.287 -1.395 1 61.11 ? O1 EDO 605 A 1 HETATM 3 C C2 EDO . . . F 5 -29.498 -1.239 -1.066 1 59.24 ? C2 EDO 605 A 1 HETATM 4 O O2 EDO . . . F 5 -28.419 -1.082 -1.994 1 57.62 ? O2 EDO 605 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #