data_6BH3 # _model_server_result.job_id TWV8CSv0ha9_a7h9whtyMA _model_server_result.datetime_utc '2024-10-19 19:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 6BH3 # _exptl.entry_id 6BH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.58 _cell.angle_gamma 90 _cell.entry_id 6BH3 _cell.length_a 116.667 _cell.length_b 62.325 _cell.length_c 46.872 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 225 A HIS 483 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A OE1 GLU 227 A GLU 485 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc3 A NE2 HIS 313 A HIS 571 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc4 B N10 DQJ . A DQJ 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 B O01 DQJ . A DQJ 601 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 C MN MN . A MN 602 1_555 L O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 192 n n C1 C2 GOL sing 193 n n C1 H11 GOL sing 194 n n C1 H12 GOL sing 195 n n O1 HO1 GOL sing 196 n n C2 O2 GOL sing 197 n n C2 C3 GOL sing 198 n n C2 H2 GOL sing 199 n n O2 HO2 GOL sing 200 n n C3 O3 GOL sing 201 n n C3 H31 GOL sing 202 n n C3 H32 GOL sing 203 n n O3 HO3 GOL sing 204 n n # _atom_sites.entry_id 6BH3 _atom_sites.fract_transf_matrix[1][1] 0.008571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQJ A 1 601 1 DQJ N55 . C 3 MN A 1 602 1 MN MN . D 4 DMS A 1 603 401 DMS DMS . E 5 GOL A 1 604 501 GOL GOL . F 5 GOL A 1 605 502 GOL GOL . G 6 EDO A 1 606 601 EDO EDO . H 6 EDO A 1 607 602 EDO EDO . I 6 EDO A 1 608 603 EDO EDO . J 6 EDO A 1 609 604 EDO EDO . K 6 EDO A 1 610 605 EDO EDO . L 7 HOH A 1 701 155 HOH HOH . L 7 HOH A 2 702 121 HOH HOH . L 7 HOH A 3 703 304 HOH HOH . L 7 HOH A 4 704 133 HOH HOH . L 7 HOH A 5 705 162 HOH HOH . L 7 HOH A 6 706 284 HOH HOH . L 7 HOH A 7 707 290 HOH HOH . L 7 HOH A 8 708 183 HOH HOH . L 7 HOH A 9 709 37 HOH HOH . L 7 HOH A 10 710 210 HOH HOH . L 7 HOH A 11 711 96 HOH HOH . L 7 HOH A 12 712 99 HOH HOH . L 7 HOH A 13 713 107 HOH HOH . L 7 HOH A 14 714 307 HOH HOH . L 7 HOH A 15 715 212 HOH HOH . L 7 HOH A 16 716 41 HOH HOH . L 7 HOH A 17 717 102 HOH HOH . L 7 HOH A 18 718 19 HOH HOH . L 7 HOH A 19 719 127 HOH HOH . L 7 HOH A 20 720 30 HOH HOH . L 7 HOH A 21 721 65 HOH HOH . L 7 HOH A 22 722 74 HOH HOH . L 7 HOH A 23 723 45 HOH HOH . L 7 HOH A 24 724 60 HOH HOH . L 7 HOH A 25 725 189 HOH HOH . L 7 HOH A 26 726 3 HOH HOH . L 7 HOH A 27 727 48 HOH HOH . L 7 HOH A 28 728 97 HOH HOH . L 7 HOH A 29 729 78 HOH HOH . L 7 HOH A 30 730 5 HOH HOH . L 7 HOH A 31 731 23 HOH HOH . L 7 HOH A 32 732 164 HOH HOH . L 7 HOH A 33 733 273 HOH HOH . L 7 HOH A 34 734 67 HOH HOH . L 7 HOH A 35 735 116 HOH HOH . L 7 HOH A 36 736 63 HOH HOH . L 7 HOH A 37 737 115 HOH HOH . L 7 HOH A 38 738 111 HOH HOH . L 7 HOH A 39 739 10 HOH HOH . L 7 HOH A 40 740 103 HOH HOH . L 7 HOH A 41 741 87 HOH HOH . L 7 HOH A 42 742 26 HOH HOH . L 7 HOH A 43 743 12 HOH HOH . L 7 HOH A 44 744 50 HOH HOH . L 7 HOH A 45 745 68 HOH HOH . L 7 HOH A 46 746 229 HOH HOH . L 7 HOH A 47 747 57 HOH HOH . L 7 HOH A 48 748 32 HOH HOH . L 7 HOH A 49 749 173 HOH HOH . L 7 HOH A 50 750 150 HOH HOH . L 7 HOH A 51 751 42 HOH HOH . L 7 HOH A 52 752 36 HOH HOH . L 7 HOH A 53 753 180 HOH HOH . L 7 HOH A 54 754 246 HOH HOH . L 7 HOH A 55 755 84 HOH HOH . L 7 HOH A 56 756 94 HOH HOH . L 7 HOH A 57 757 71 HOH HOH . L 7 HOH A 58 758 267 HOH HOH . L 7 HOH A 59 759 8 HOH HOH . L 7 HOH A 60 760 40 HOH HOH . L 7 HOH A 61 761 104 HOH HOH . L 7 HOH A 62 762 55 HOH HOH . L 7 HOH A 63 763 198 HOH HOH . L 7 HOH A 64 764 105 HOH HOH . L 7 HOH A 65 765 22 HOH HOH . L 7 HOH A 66 766 203 HOH HOH . L 7 HOH A 67 767 64 HOH HOH . L 7 HOH A 68 768 170 HOH HOH . L 7 HOH A 69 769 70 HOH HOH . L 7 HOH A 70 770 113 HOH HOH . L 7 HOH A 71 771 119 HOH HOH . L 7 HOH A 72 772 79 HOH HOH . L 7 HOH A 73 773 152 HOH HOH . L 7 HOH A 74 774 6 HOH HOH . L 7 HOH A 75 775 163 HOH HOH . L 7 HOH A 76 776 216 HOH HOH . L 7 HOH A 77 777 95 HOH HOH . L 7 HOH A 78 778 1 HOH HOH . L 7 HOH A 79 779 298 HOH HOH . L 7 HOH A 80 780 250 HOH HOH . L 7 HOH A 81 781 14 HOH HOH . L 7 HOH A 82 782 11 HOH HOH . L 7 HOH A 83 783 16 HOH HOH . L 7 HOH A 84 784 75 HOH HOH . L 7 HOH A 85 785 9 HOH HOH . L 7 HOH A 86 786 158 HOH HOH . L 7 HOH A 87 787 72 HOH HOH . L 7 HOH A 88 788 15 HOH HOH . L 7 HOH A 89 789 4 HOH HOH . L 7 HOH A 90 790 27 HOH HOH . L 7 HOH A 91 791 269 HOH HOH . L 7 HOH A 92 792 33 HOH HOH . L 7 HOH A 93 793 90 HOH HOH . L 7 HOH A 94 794 117 HOH HOH . L 7 HOH A 95 795 59 HOH HOH . L 7 HOH A 96 796 7 HOH HOH . L 7 HOH A 97 797 83 HOH HOH . L 7 HOH A 98 798 243 HOH HOH . L 7 HOH A 99 799 129 HOH HOH . L 7 HOH A 100 800 25 HOH HOH . L 7 HOH A 101 801 207 HOH HOH . L 7 HOH A 102 802 17 HOH HOH . L 7 HOH A 103 803 98 HOH HOH . L 7 HOH A 104 804 47 HOH HOH . L 7 HOH A 105 805 35 HOH HOH . L 7 HOH A 106 806 101 HOH HOH . L 7 HOH A 107 807 81 HOH HOH . L 7 HOH A 108 808 291 HOH HOH . L 7 HOH A 109 809 77 HOH HOH . L 7 HOH A 110 810 69 HOH HOH . L 7 HOH A 111 811 18 HOH HOH . L 7 HOH A 112 812 287 HOH HOH . L 7 HOH A 113 813 46 HOH HOH . L 7 HOH A 114 814 24 HOH HOH . L 7 HOH A 115 815 54 HOH HOH . L 7 HOH A 116 816 80 HOH HOH . L 7 HOH A 117 817 53 HOH HOH . L 7 HOH A 118 818 51 HOH HOH . L 7 HOH A 119 819 39 HOH HOH . L 7 HOH A 120 820 13 HOH HOH . L 7 HOH A 121 821 256 HOH HOH . L 7 HOH A 122 822 21 HOH HOH . L 7 HOH A 123 823 280 HOH HOH . L 7 HOH A 124 824 20 HOH HOH . L 7 HOH A 125 825 282 HOH HOH . L 7 HOH A 126 826 124 HOH HOH . L 7 HOH A 127 827 211 HOH HOH . L 7 HOH A 128 828 168 HOH HOH . L 7 HOH A 129 829 49 HOH HOH . L 7 HOH A 130 830 224 HOH HOH . L 7 HOH A 131 831 148 HOH HOH . L 7 HOH A 132 832 301 HOH HOH . L 7 HOH A 133 833 88 HOH HOH . L 7 HOH A 134 834 149 HOH HOH . L 7 HOH A 135 835 56 HOH HOH . L 7 HOH A 136 836 226 HOH HOH . L 7 HOH A 137 837 76 HOH HOH . L 7 HOH A 138 838 143 HOH HOH . L 7 HOH A 139 839 73 HOH HOH . L 7 HOH A 140 840 182 HOH HOH . L 7 HOH A 141 841 169 HOH HOH . L 7 HOH A 142 842 89 HOH HOH . L 7 HOH A 143 843 277 HOH HOH . L 7 HOH A 144 844 126 HOH HOH . L 7 HOH A 145 845 130 HOH HOH . L 7 HOH A 146 846 146 HOH HOH . L 7 HOH A 147 847 234 HOH HOH . L 7 HOH A 148 848 306 HOH HOH . L 7 HOH A 149 849 91 HOH HOH . L 7 HOH A 150 850 2 HOH HOH . L 7 HOH A 151 851 187 HOH HOH . L 7 HOH A 152 852 176 HOH HOH . L 7 HOH A 153 853 154 HOH HOH . L 7 HOH A 154 854 52 HOH HOH . L 7 HOH A 155 855 201 HOH HOH . L 7 HOH A 156 856 120 HOH HOH . L 7 HOH A 157 857 281 HOH HOH . L 7 HOH A 158 858 165 HOH HOH . L 7 HOH A 159 859 137 HOH HOH . L 7 HOH A 160 860 38 HOH HOH . L 7 HOH A 161 861 100 HOH HOH . L 7 HOH A 162 862 175 HOH HOH . L 7 HOH A 163 863 278 HOH HOH . L 7 HOH A 164 864 289 HOH HOH . L 7 HOH A 165 865 204 HOH HOH . L 7 HOH A 166 866 288 HOH HOH . L 7 HOH A 167 867 147 HOH HOH . L 7 HOH A 168 868 255 HOH HOH . L 7 HOH A 169 869 217 HOH HOH . L 7 HOH A 170 870 140 HOH HOH . L 7 HOH A 171 871 285 HOH HOH . L 7 HOH A 172 872 112 HOH HOH . L 7 HOH A 173 873 188 HOH HOH . L 7 HOH A 174 874 300 HOH HOH . L 7 HOH A 175 875 178 HOH HOH . L 7 HOH A 176 876 131 HOH HOH . L 7 HOH A 177 877 145 HOH HOH . L 7 HOH A 178 878 174 HOH HOH . L 7 HOH A 179 879 92 HOH HOH . L 7 HOH A 180 880 276 HOH HOH . L 7 HOH A 181 881 292 HOH HOH . L 7 HOH A 182 882 266 HOH HOH . L 7 HOH A 183 883 286 HOH HOH . L 7 HOH A 184 884 253 HOH HOH . L 7 HOH A 185 885 151 HOH HOH . L 7 HOH A 186 886 202 HOH HOH . L 7 HOH A 187 887 279 HOH HOH . L 7 HOH A 188 888 206 HOH HOH . L 7 HOH A 189 889 153 HOH HOH . L 7 HOH A 190 890 283 HOH HOH . L 7 HOH A 191 891 309 HOH HOH . L 7 HOH A 192 892 166 HOH HOH . L 7 HOH A 193 893 160 HOH HOH . L 7 HOH A 194 894 167 HOH HOH . L 7 HOH A 195 895 109 HOH HOH . L 7 HOH A 196 896 296 HOH HOH . L 7 HOH A 197 897 58 HOH HOH . L 7 HOH A 198 898 295 HOH HOH . L 7 HOH A 199 899 299 HOH HOH . L 7 HOH A 200 900 308 HOH HOH . L 7 HOH A 201 901 233 HOH HOH . L 7 HOH A 202 902 305 HOH HOH . L 7 HOH A 203 903 190 HOH HOH . L 7 HOH A 204 904 228 HOH HOH . L 7 HOH A 205 905 66 HOH HOH . L 7 HOH A 206 906 247 HOH HOH . L 7 HOH A 207 907 297 HOH HOH . L 7 HOH A 208 908 186 HOH HOH . L 7 HOH A 209 909 108 HOH HOH . L 7 HOH A 210 910 310 HOH HOH . L 7 HOH A 211 911 270 HOH HOH . L 7 HOH A 212 912 303 HOH HOH . L 7 HOH A 213 913 125 HOH HOH . L 7 HOH A 214 914 268 HOH HOH . L 7 HOH A 215 915 219 HOH HOH . L 7 HOH A 216 916 302 HOH HOH . L 7 HOH A 217 917 134 HOH HOH . L 7 HOH A 218 918 62 HOH HOH . L 7 HOH A 219 919 93 HOH HOH . L 7 HOH A 220 920 181 HOH HOH . L 7 HOH A 221 921 238 HOH HOH . L 7 HOH A 222 922 261 HOH HOH . L 7 HOH A 223 923 122 HOH HOH . L 7 HOH A 224 924 144 HOH HOH . L 7 HOH A 225 925 252 HOH HOH . L 7 HOH A 226 926 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -24.489 20.112 2.045 1 21.98 ? C1 GOL 605 A 1 HETATM 2 O O1 GOL . . . F 5 -23.981 21.028 1.135 1 27.76 ? O1 GOL 605 A 1 HETATM 3 C C2 GOL . . . F 5 -24.181 20.661 3.453 1 24.84 ? C2 GOL 605 A 1 HETATM 4 O O2 GOL . . . F 5 -24.437 22.021 3.54 1 27.82 ? O2 GOL 605 A 1 HETATM 5 C C3 GOL . . . F 5 -25.099 19.836 4.385 1 26.52 ? C3 GOL 605 A 1 HETATM 6 O O3 GOL . . . F 5 -24.841 20.267 5.68 1 22.54 ? O3 GOL 605 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #