data_6BHB # _model_server_result.job_id jc1T7kiBG5lRLJYSp4ijwg _model_server_result.datetime_utc '2024-10-10 09:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bhb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6BHB # _exptl.entry_id 6BHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BHB _cell.length_a 99.74 _cell.length_b 99.74 _cell.length_c 99.74 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.87 49.87 99.74 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.87 99.74 49.87 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 6BHB _atom_sites.fract_transf_matrix[1][1] 0.010026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010026 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 2 DMS DMS . D 2 DMS A 1 303 3 DMS DMS . E 2 DMS A 1 304 5 DMS DMS . F 2 DMS A 1 305 6 DMS DMS . G 2 DMS A 1 306 7 DMS DMS . H 2 DMS A 1 307 8 DMS DMS . I 2 DMS A 1 308 9 DMS DMS . J 3 DS1 A 1 309 1 DS1 FRG . K 4 HOH A 1 401 25 HOH HOH . K 4 HOH A 2 402 71 HOH HOH . K 4 HOH A 3 403 99 HOH HOH . K 4 HOH A 4 404 51 HOH HOH . K 4 HOH A 5 405 38 HOH HOH . K 4 HOH A 6 406 69 HOH HOH . K 4 HOH A 7 407 84 HOH HOH . K 4 HOH A 8 408 16 HOH HOH . K 4 HOH A 9 409 2 HOH HOH . K 4 HOH A 10 410 66 HOH HOH . K 4 HOH A 11 411 26 HOH HOH . K 4 HOH A 12 412 136 HOH HOH . K 4 HOH A 13 413 83 HOH HOH . K 4 HOH A 14 414 7 HOH HOH . K 4 HOH A 15 415 41 HOH HOH . K 4 HOH A 16 416 6 HOH HOH . K 4 HOH A 17 417 124 HOH HOH . K 4 HOH A 18 418 80 HOH HOH . K 4 HOH A 19 419 46 HOH HOH . K 4 HOH A 20 420 4 HOH HOH . K 4 HOH A 21 421 8 HOH HOH . K 4 HOH A 22 422 91 HOH HOH . K 4 HOH A 23 423 35 HOH HOH . K 4 HOH A 24 424 60 HOH HOH . K 4 HOH A 25 425 40 HOH HOH . K 4 HOH A 26 426 3 HOH HOH . K 4 HOH A 27 427 126 HOH HOH . K 4 HOH A 28 428 1 HOH HOH . K 4 HOH A 29 429 87 HOH HOH . K 4 HOH A 30 430 11 HOH HOH . K 4 HOH A 31 431 33 HOH HOH . K 4 HOH A 32 432 56 HOH HOH . K 4 HOH A 33 433 17 HOH HOH . K 4 HOH A 34 434 9 HOH HOH . K 4 HOH A 35 435 77 HOH HOH . K 4 HOH A 36 436 18 HOH HOH . K 4 HOH A 37 437 21 HOH HOH . K 4 HOH A 38 438 45 HOH HOH . K 4 HOH A 39 439 135 HOH HOH . K 4 HOH A 40 440 14 HOH HOH . K 4 HOH A 41 441 123 HOH HOH . K 4 HOH A 42 442 20 HOH HOH . K 4 HOH A 43 443 120 HOH HOH . K 4 HOH A 44 444 31 HOH HOH . K 4 HOH A 45 445 43 HOH HOH . K 4 HOH A 46 446 48 HOH HOH . K 4 HOH A 47 447 37 HOH HOH . K 4 HOH A 48 448 5 HOH HOH . K 4 HOH A 49 449 125 HOH HOH . K 4 HOH A 50 450 13 HOH HOH . K 4 HOH A 51 451 24 HOH HOH . K 4 HOH A 52 452 23 HOH HOH . K 4 HOH A 53 453 137 HOH HOH . K 4 HOH A 54 454 10 HOH HOH . K 4 HOH A 55 455 132 HOH HOH . K 4 HOH A 56 456 12 HOH HOH . K 4 HOH A 57 457 130 HOH HOH . K 4 HOH A 58 458 70 HOH HOH . K 4 HOH A 59 459 28 HOH HOH . K 4 HOH A 60 460 142 HOH HOH . K 4 HOH A 61 461 22 HOH HOH . K 4 HOH A 62 462 76 HOH HOH . K 4 HOH A 63 463 44 HOH HOH . K 4 HOH A 64 464 104 HOH HOH . K 4 HOH A 65 465 36 HOH HOH . K 4 HOH A 66 466 63 HOH HOH . K 4 HOH A 67 467 141 HOH HOH . K 4 HOH A 68 468 62 HOH HOH . K 4 HOH A 69 469 42 HOH HOH . K 4 HOH A 70 470 127 HOH HOH . K 4 HOH A 71 471 65 HOH HOH . K 4 HOH A 72 472 34 HOH HOH . K 4 HOH A 73 473 122 HOH HOH . K 4 HOH A 74 474 15 HOH HOH . K 4 HOH A 75 475 61 HOH HOH . K 4 HOH A 76 476 27 HOH HOH . K 4 HOH A 77 477 143 HOH HOH . K 4 HOH A 78 478 78 HOH HOH . K 4 HOH A 79 479 144 HOH HOH . K 4 HOH A 80 480 139 HOH HOH . K 4 HOH A 81 481 30 HOH HOH . K 4 HOH A 82 482 140 HOH HOH . K 4 HOH A 83 483 119 HOH HOH . K 4 HOH A 84 484 138 HOH HOH . K 4 HOH A 85 485 85 HOH HOH . K 4 HOH A 86 486 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 2 18.868 17.398 33.847 1 50.34 ? S DMS 306 A 1 HETATM 2 O O DMS . . . G 2 20.184 16.691 33.855 1 60.03 ? O DMS 306 A 1 HETATM 3 C C1 DMS . . . G 2 18.514 17.994 32.171 1 51.46 ? C1 DMS 306 A 1 HETATM 4 C C2 DMS . . . G 2 17.534 16.184 34.041 1 42.03 ? C2 DMS 306 A 1 HETATM 5 H H11 DMS . . . G 2 19.228 18.728 31.899 1 61.75 ? H11 DMS 306 A 1 HETATM 6 H H12 DMS . . . G 2 17.544 18.418 32.144 1 61.75 ? H12 DMS 306 A 1 HETATM 7 H H13 DMS . . . G 2 18.564 17.185 31.49 1 61.75 ? H13 DMS 306 A 1 HETATM 8 H H21 DMS . . . G 2 17.605 15.732 34.996 1 50.43 ? H21 DMS 306 A 1 HETATM 9 H H22 DMS . . . G 2 17.622 15.441 33.292 1 50.43 ? H22 DMS 306 A 1 HETATM 10 H H23 DMS . . . G 2 16.598 16.67 33.949 1 50.43 ? H23 DMS 306 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #