data_6BHU # _model_server_result.job_id hIbfj8oI9dZh01sICgqlWQ _model_server_result.datetime_utc '2024-11-30 01:52:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bhu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1601}' # _entry.id 6BHU # _exptl.entry_id 6BHU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BHU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 805 A SER 685 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OE1 GLN 833 A GLN 713 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc3 A OG SER 1453 A SER 1333 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc4 A OE1 GLN 1494 A GLN 1374 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc5 B O1G ATP . A ATP 1601 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc6 B O1B ATP . A ATP 1601 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc7 C O2G ATP . A ATP 1602 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc8 C O2B ATP . A ATP 1602 1_555 E MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6BHU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1601 1 ATP ATP . C 2 ATP A 1 1602 2 ATP ATP . D 3 MG A 1 1603 1 MG MG . E 3 MG A 1 1604 2 MG MG . F 4 CLR A 1 1605 1 CLR Y01 . G 4 CLR A 1 1606 2 CLR Y01 . H 4 CLR A 1 1607 3 CLR Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 110.352 138.079 172.558 1 135.2 ? PG ATP 1601 A 1 HETATM 2 O O1G ATP . . . B 2 110.837 138.233 171.137 1 136.79 ? O1G ATP 1601 A 1 HETATM 3 O O2G ATP . . . B 2 110.555 139.297 173.42 1 138.55 ? O2G ATP 1601 A 1 HETATM 4 O O3G ATP . . . B 2 108.98 137.46 172.683 1 133.73 ? O3G ATP 1601 A 1 HETATM 5 P PB ATP . . . B 2 112.055 135.86 172.303 1 134.29 ? PB ATP 1601 A 1 HETATM 6 O O1B ATP . . . B 2 112.472 136.465 170.984 1 133.43 ? O1B ATP 1601 A 1 HETATM 7 O O2B ATP . . . B 2 111.167 134.641 172.333 1 136.38 ? O2B ATP 1601 A 1 HETATM 8 O O3B ATP . . . B 2 111.362 137.004 173.199 1 134.33 ? O3B ATP 1601 A 1 HETATM 9 P PA ATP . . . B 2 114.796 135.277 172.48 1 137.39 ? PA ATP 1601 A 1 HETATM 10 O O1A ATP . . . B 2 114.647 134.267 171.371 1 139.6 ? O1A ATP 1601 A 1 HETATM 11 O O2A ATP . . . B 2 115.343 136.644 172.152 1 141.68 ? O2A ATP 1601 A 1 HETATM 12 O O3A ATP . . . B 2 113.362 135.507 173.168 1 135.14 ? O3A ATP 1601 A 1 HETATM 13 O O5' ATP . . . B 2 115.71 134.63 173.642 1 138.39 ? O5' ATP 1601 A 1 HETATM 14 C C5' ATP . . . B 2 115.229 134.224 174.926 1 140.59 ? C5' ATP 1601 A 1 HETATM 15 C C4' ATP . . . B 2 116.353 134.245 175.961 1 143.48 ? C4' ATP 1601 A 1 HETATM 16 O O4' ATP . . . B 2 117.639 134.117 175.343 1 148.97 ? O4' ATP 1601 A 1 HETATM 17 C C3' ATP . . . B 2 116.377 135.53 176.779 1 143.67 ? C3' ATP 1601 A 1 HETATM 18 O O3' ATP . . . B 2 115.778 135.321 178.063 1 141.61 ? O3' ATP 1601 A 1 HETATM 19 C C2' ATP . . . B 2 117.838 135.926 176.885 1 148.96 ? C2' ATP 1601 A 1 HETATM 20 O O2' ATP . . . B 2 118.34 135.781 178.218 1 150.77 ? O2' ATP 1601 A 1 HETATM 21 C C1' ATP . . . B 2 118.59 135.009 175.931 1 157.27 ? C1' ATP 1601 A 1 HETATM 22 N N9 ATP . . . B 2 119.273 135.808 174.881 1 173.78 ? N9 ATP 1601 A 1 HETATM 23 C C8 ATP . . . B 2 118.693 136.378 173.804 1 179.03 ? C8 ATP 1601 A 1 HETATM 24 N N7 ATP . . . B 2 119.61 137.037 173.049 1 182.52 ? N7 ATP 1601 A 1 HETATM 25 C C5 ATP . . . B 2 120.804 136.896 173.645 1 184.11 ? C5 ATP 1601 A 1 HETATM 26 C C6 ATP . . . B 2 122.195 137.341 173.378 1 188.01 ? C6 ATP 1601 A 1 HETATM 27 N N6 ATP . . . B 2 122.487 138.089 172.289 1 194.37 ? N6 ATP 1601 A 1 HETATM 28 N N1 ATP . . . B 2 123.158 136.974 174.258 1 190.37 ? N1 ATP 1601 A 1 HETATM 29 C C2 ATP . . . B 2 122.885 136.226 175.353 1 190.83 ? C2 ATP 1601 A 1 HETATM 30 N N3 ATP . . . B 2 121.639 135.792 175.651 1 191.55 ? N3 ATP 1601 A 1 HETATM 31 C C4 ATP . . . B 2 120.578 136.086 174.854 1 181.97 ? C4 ATP 1601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #