data_6BI9 # _model_server_result.job_id cb7w1Goltx4lc24x_ppKHw _model_server_result.datetime_utc '2025-01-10 07:51:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6BI9 # _exptl.entry_id 6BI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 153.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,2,5-trimethyl-1H-pyrrole-3-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BI9 _cell.length_a 100.25 _cell.length_b 100.25 _cell.length_c 100.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -50.125 50.125 100.25 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 50.125 100.25 50.125 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C8 H11 N O2' _chem_comp.formula_weight 153.178 _chem_comp.id DS7 _chem_comp.mon_nstd_flag . _chem_comp.name '1,2,5-trimethyl-1H-pyrrole-3-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 DS7 sing 113 n n C7 N DS7 sing 114 n n C1 N DS7 sing 115 n y C1 C2 DS7 doub 116 n y N C5 DS7 sing 117 n y C2 C3 DS7 sing 118 n y C5 C3 DS7 doub 119 n y C5 C6 DS7 sing 120 n n C3 C4 DS7 sing 121 n n O1 C4 DS7 doub 122 n n C4 O DS7 sing 123 n n C7 H9 DS7 sing 124 n n C7 H10 DS7 sing 125 n n C7 H8 DS7 sing 126 n n C6 H5 DS7 sing 127 n n C6 H6 DS7 sing 128 n n C6 H7 DS7 sing 129 n n C2 H3 DS7 sing 130 n n O H4 DS7 sing 131 n n C H DS7 sing 132 n n C H2 DS7 sing 133 n n C H1 DS7 sing 134 n n # _atom_sites.entry_id 6BI9 _atom_sites.fract_transf_matrix[1][1] 0.009975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 2 DMS DMS . D 2 DMS A 1 303 5 DMS DMS . E 2 DMS A 1 304 8 DMS DMS . F 2 DMS A 1 305 9 DMS DMS . G 3 DS7 A 1 306 1 DS7 FRG . H 4 HOH A 1 401 228 HOH HOH . H 4 HOH A 2 402 248 HOH HOH . H 4 HOH A 3 403 122 HOH HOH . H 4 HOH A 4 404 106 HOH HOH . H 4 HOH A 5 405 116 HOH HOH . H 4 HOH A 6 406 188 HOH HOH . H 4 HOH A 7 407 255 HOH HOH . H 4 HOH A 8 408 69 HOH HOH . H 4 HOH A 9 409 209 HOH HOH . H 4 HOH A 10 410 110 HOH HOH . H 4 HOH A 11 411 118 HOH HOH . H 4 HOH A 12 412 138 HOH HOH . H 4 HOH A 13 413 126 HOH HOH . H 4 HOH A 14 414 170 HOH HOH . H 4 HOH A 15 415 66 HOH HOH . H 4 HOH A 16 416 141 HOH HOH . H 4 HOH A 17 417 128 HOH HOH . H 4 HOH A 18 418 237 HOH HOH . H 4 HOH A 19 419 41 HOH HOH . H 4 HOH A 20 420 167 HOH HOH . H 4 HOH A 21 421 82 HOH HOH . H 4 HOH A 22 422 137 HOH HOH . H 4 HOH A 23 423 195 HOH HOH . H 4 HOH A 24 424 215 HOH HOH . H 4 HOH A 25 425 112 HOH HOH . H 4 HOH A 26 426 16 HOH HOH . H 4 HOH A 27 427 87 HOH HOH . H 4 HOH A 28 428 144 HOH HOH . H 4 HOH A 29 429 59 HOH HOH . H 4 HOH A 30 430 171 HOH HOH . H 4 HOH A 31 431 4 HOH HOH . H 4 HOH A 32 432 25 HOH HOH . H 4 HOH A 33 433 115 HOH HOH . H 4 HOH A 34 434 11 HOH HOH . H 4 HOH A 35 435 65 HOH HOH . H 4 HOH A 36 436 24 HOH HOH . H 4 HOH A 37 437 152 HOH HOH . H 4 HOH A 38 438 27 HOH HOH . H 4 HOH A 39 439 20 HOH HOH . H 4 HOH A 40 440 218 HOH HOH . H 4 HOH A 41 441 86 HOH HOH . H 4 HOH A 42 442 74 HOH HOH . H 4 HOH A 43 443 6 HOH HOH . H 4 HOH A 44 444 68 HOH HOH . H 4 HOH A 45 445 256 HOH HOH . H 4 HOH A 46 446 2 HOH HOH . H 4 HOH A 47 447 46 HOH HOH . H 4 HOH A 48 448 57 HOH HOH . H 4 HOH A 49 449 98 HOH HOH . H 4 HOH A 50 450 236 HOH HOH . H 4 HOH A 51 451 88 HOH HOH . H 4 HOH A 52 452 165 HOH HOH . H 4 HOH A 53 453 73 HOH HOH . H 4 HOH A 54 454 22 HOH HOH . H 4 HOH A 55 455 246 HOH HOH . H 4 HOH A 56 456 75 HOH HOH . H 4 HOH A 57 457 26 HOH HOH . H 4 HOH A 58 458 52 HOH HOH . H 4 HOH A 59 459 48 HOH HOH . H 4 HOH A 60 460 219 HOH HOH . H 4 HOH A 61 461 76 HOH HOH . H 4 HOH A 62 462 13 HOH HOH . H 4 HOH A 63 463 194 HOH HOH . H 4 HOH A 64 464 146 HOH HOH . H 4 HOH A 65 465 45 HOH HOH . H 4 HOH A 66 466 9 HOH HOH . H 4 HOH A 67 467 49 HOH HOH . H 4 HOH A 68 468 176 HOH HOH . H 4 HOH A 69 469 55 HOH HOH . H 4 HOH A 70 470 18 HOH HOH . H 4 HOH A 71 471 1 HOH HOH . H 4 HOH A 72 472 70 HOH HOH . H 4 HOH A 73 473 15 HOH HOH . H 4 HOH A 74 474 7 HOH HOH . H 4 HOH A 75 475 242 HOH HOH . H 4 HOH A 76 476 37 HOH HOH . H 4 HOH A 77 477 53 HOH HOH . H 4 HOH A 78 478 117 HOH HOH . H 4 HOH A 79 479 196 HOH HOH . H 4 HOH A 80 480 91 HOH HOH . H 4 HOH A 81 481 42 HOH HOH . H 4 HOH A 82 482 17 HOH HOH . H 4 HOH A 83 483 145 HOH HOH . H 4 HOH A 84 484 83 HOH HOH . H 4 HOH A 85 485 35 HOH HOH . H 4 HOH A 86 486 39 HOH HOH . H 4 HOH A 87 487 3 HOH HOH . H 4 HOH A 88 488 5 HOH HOH . H 4 HOH A 89 489 90 HOH HOH . H 4 HOH A 90 490 142 HOH HOH . H 4 HOH A 91 491 149 HOH HOH . H 4 HOH A 92 492 190 HOH HOH . H 4 HOH A 93 493 84 HOH HOH . H 4 HOH A 94 494 8 HOH HOH . H 4 HOH A 95 495 63 HOH HOH . H 4 HOH A 96 496 61 HOH HOH . H 4 HOH A 97 497 79 HOH HOH . H 4 HOH A 98 498 153 HOH HOH . H 4 HOH A 99 499 180 HOH HOH . H 4 HOH A 100 500 58 HOH HOH . H 4 HOH A 101 501 85 HOH HOH . H 4 HOH A 102 502 19 HOH HOH . H 4 HOH A 103 503 133 HOH HOH . H 4 HOH A 104 504 123 HOH HOH . H 4 HOH A 105 505 183 HOH HOH . H 4 HOH A 106 506 184 HOH HOH . H 4 HOH A 107 507 136 HOH HOH . H 4 HOH A 108 508 193 HOH HOH . H 4 HOH A 109 509 207 HOH HOH . H 4 HOH A 110 510 223 HOH HOH . H 4 HOH A 111 511 135 HOH HOH . H 4 HOH A 112 512 23 HOH HOH . H 4 HOH A 113 513 62 HOH HOH . H 4 HOH A 114 514 67 HOH HOH . H 4 HOH A 115 515 21 HOH HOH . H 4 HOH A 116 516 50 HOH HOH . H 4 HOH A 117 517 185 HOH HOH . H 4 HOH A 118 518 139 HOH HOH . H 4 HOH A 119 519 56 HOH HOH . H 4 HOH A 120 520 10 HOH HOH . H 4 HOH A 121 521 234 HOH HOH . H 4 HOH A 122 522 121 HOH HOH . H 4 HOH A 123 523 12 HOH HOH . H 4 HOH A 124 524 101 HOH HOH . H 4 HOH A 125 525 47 HOH HOH . H 4 HOH A 126 526 249 HOH HOH . H 4 HOH A 127 527 64 HOH HOH . H 4 HOH A 128 528 204 HOH HOH . H 4 HOH A 129 529 51 HOH HOH . H 4 HOH A 130 530 124 HOH HOH . H 4 HOH A 131 531 32 HOH HOH . H 4 HOH A 132 532 54 HOH HOH . H 4 HOH A 133 533 81 HOH HOH . H 4 HOH A 134 534 71 HOH HOH . H 4 HOH A 135 535 77 HOH HOH . H 4 HOH A 136 536 28 HOH HOH . H 4 HOH A 137 537 29 HOH HOH . H 4 HOH A 138 538 94 HOH HOH . H 4 HOH A 139 539 157 HOH HOH . H 4 HOH A 140 540 131 HOH HOH . H 4 HOH A 141 541 43 HOH HOH . H 4 HOH A 142 542 80 HOH HOH . H 4 HOH A 143 543 89 HOH HOH . H 4 HOH A 144 544 156 HOH HOH . H 4 HOH A 145 545 14 HOH HOH . H 4 HOH A 146 546 109 HOH HOH . H 4 HOH A 147 547 38 HOH HOH . H 4 HOH A 148 548 33 HOH HOH . H 4 HOH A 149 549 36 HOH HOH . H 4 HOH A 150 550 217 HOH HOH . H 4 HOH A 151 551 197 HOH HOH . H 4 HOH A 152 552 34 HOH HOH . H 4 HOH A 153 553 203 HOH HOH . H 4 HOH A 154 554 108 HOH HOH . H 4 HOH A 155 555 198 HOH HOH . H 4 HOH A 156 556 127 HOH HOH . H 4 HOH A 157 557 191 HOH HOH . H 4 HOH A 158 558 158 HOH HOH . H 4 HOH A 159 559 224 HOH HOH . H 4 HOH A 160 560 78 HOH HOH . H 4 HOH A 161 561 230 HOH HOH . H 4 HOH A 162 562 92 HOH HOH . H 4 HOH A 163 563 174 HOH HOH . H 4 HOH A 164 564 72 HOH HOH . H 4 HOH A 165 565 93 HOH HOH . H 4 HOH A 166 566 221 HOH HOH . H 4 HOH A 167 567 241 HOH HOH . H 4 HOH A 168 568 169 HOH HOH . H 4 HOH A 169 569 159 HOH HOH . H 4 HOH A 170 570 166 HOH HOH . H 4 HOH A 171 571 257 HOH HOH . H 4 HOH A 172 572 245 HOH HOH . H 4 HOH A 173 573 179 HOH HOH . H 4 HOH A 174 574 107 HOH HOH . H 4 HOH A 175 575 186 HOH HOH . H 4 HOH A 176 576 134 HOH HOH . H 4 HOH A 177 577 160 HOH HOH . H 4 HOH A 178 578 252 HOH HOH . H 4 HOH A 179 579 226 HOH HOH . H 4 HOH A 180 580 114 HOH HOH . H 4 HOH A 181 581 104 HOH HOH . H 4 HOH A 182 582 251 HOH HOH . H 4 HOH A 183 583 254 HOH HOH . H 4 HOH A 184 584 102 HOH HOH . H 4 HOH A 185 585 96 HOH HOH . H 4 HOH A 186 586 147 HOH HOH . H 4 HOH A 187 587 100 HOH HOH . H 4 HOH A 188 588 140 HOH HOH . H 4 HOH A 189 589 31 HOH HOH . H 4 HOH A 190 590 177 HOH HOH . H 4 HOH A 191 591 210 HOH HOH . H 4 HOH A 192 592 30 HOH HOH . H 4 HOH A 193 593 129 HOH HOH . H 4 HOH A 194 594 187 HOH HOH . H 4 HOH A 195 595 199 HOH HOH . H 4 HOH A 196 596 225 HOH HOH . H 4 HOH A 197 597 155 HOH HOH . H 4 HOH A 198 598 247 HOH HOH . H 4 HOH A 199 599 239 HOH HOH . H 4 HOH A 200 600 119 HOH HOH . H 4 HOH A 201 601 211 HOH HOH . H 4 HOH A 202 602 120 HOH HOH . H 4 HOH A 203 603 253 HOH HOH . H 4 HOH A 204 604 212 HOH HOH . H 4 HOH A 205 605 192 HOH HOH . H 4 HOH A 206 606 154 HOH HOH . H 4 HOH A 207 607 161 HOH HOH . H 4 HOH A 208 608 125 HOH HOH . H 4 HOH A 209 609 103 HOH HOH . H 4 HOH A 210 610 111 HOH HOH . H 4 HOH A 211 611 99 HOH HOH . H 4 HOH A 212 612 105 HOH HOH . H 4 HOH A 213 613 200 HOH HOH . H 4 HOH A 214 614 113 HOH HOH . H 4 HOH A 215 615 168 HOH HOH . H 4 HOH A 216 616 163 HOH HOH . H 4 HOH A 217 617 175 HOH HOH . H 4 HOH A 218 618 240 HOH HOH . H 4 HOH A 219 619 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 DS7 . B . G 3 -4.359 27.642 54.418 0.91 44.43 ? C7 DS7 306 A 1 HETATM 2 C C4 DS7 . B . G 3 -0.008 29.959 56.17 0.91 27.09 ? C4 DS7 306 A 1 HETATM 3 C C5 DS7 . B . G 3 -2.465 29.117 55.33 0.91 39.34 ? C5 DS7 306 A 1 HETATM 4 C C6 DS7 . B . G 3 -3.394 30.291 55.568 0.91 43.07 ? C6 DS7 306 A 1 HETATM 5 C C3 DS7 . B . G 3 -1.061 28.974 55.562 0.91 32.98 ? C3 DS7 306 A 1 HETATM 6 C C2 DS7 . B . G 3 -0.745 27.638 55.169 0.91 28.04 ? C2 DS7 306 A 1 HETATM 7 C C1 DS7 . B . G 3 -1.917 27.014 54.703 0.91 36.49 ? C1 DS7 306 A 1 HETATM 8 O O DS7 . B . G 3 -0.289 30.967 56.824 0.91 30.3 ? O DS7 306 A 1 HETATM 9 O O1 DS7 . B . G 3 1.211 29.73 56.093 0.91 36.94 ? O1 DS7 306 A 1 HETATM 10 N N DS7 . B . G 3 -2.982 27.921 54.812 0.91 41.24 ? N DS7 306 A 1 HETATM 11 C C DS7 . B . G 3 -2.093 25.601 54.16 0.91 31.63 ? C DS7 306 A 1 HETATM 12 H H9 DS7 . B . G 3 -4.558 26.706 54.579 0.91 53.32 ? H9 DS7 306 A 1 HETATM 13 H H10 DS7 . B . G 3 -4.472 27.838 53.475 0.91 53.32 ? H10 DS7 306 A 1 HETATM 14 H H8 DS7 . B . G 3 -4.963 28.195 54.938 0.91 53.32 ? H8 DS7 306 A 1 HETATM 15 H H5 DS7 . B . G 3 -4.305 30.031 55.358 0.91 51.68 ? H5 DS7 306 A 1 HETATM 16 H H6 DS7 . B . G 3 -3.13 31.033 55.002 0.91 51.68 ? H6 DS7 306 A 1 HETATM 17 H H7 DS7 . B . G 3 -3.342 30.561 56.499 0.91 51.68 ? H7 DS7 306 A 1 HETATM 18 H H3 DS7 . B . G 3 0.099 27.248 55.206 0.91 33.65 ? H3 DS7 306 A 1 HETATM 19 H H DS7 . B . G 3 -3.032 25.437 53.983 0.91 37.96 ? H DS7 306 A 1 HETATM 20 H H2 DS7 . B . G 3 -1.771 24.961 54.813 0.91 37.96 ? H2 DS7 306 A 1 HETATM 21 H H1 DS7 . B . G 3 -1.588 25.505 53.337 0.91 37.96 ? H1 DS7 306 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #