data_6BIA # _model_server_result.job_id kmAc-Qv1S2HbM-E4uxjoNw _model_server_result.datetime_utc '2024-11-16 05:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 6BIA # _exptl.entry_id 6BIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BIA _cell.length_a 133.85 _cell.length_b 133.85 _cell.length_c 223.695 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 35 A ASP 38 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 A OD1 ASP 36 A ASP 39 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc3 A OD1 ASP 288 A ASP 291 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc4 A OD2 ASP 288 A ASP 291 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 A OD1 ASN 289 A ASN 292 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc6 B OD1 ASP 35 B ASP 38 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B OD1 ASP 36 B ASP 39 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 B OD1 ASP 288 B ASP 291 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc9 B OD2 ASP 288 B ASP 291 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc10 B OD1 ASN 289 B ASN 292 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc11 C OD1 ASP 35 C ASP 38 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 C OD1 ASP 36 C ASP 39 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc13 C OD1 ASP 288 C ASP 291 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc14 C OD2 ASP 288 C ASP 291 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc15 C OD1 ASN 289 C ASN 292 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 6BIA _atom_sites.fract_transf_matrix[1][1] 0.007471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CIT A 1 501 1 CIT CIT . E 3 CA A 1 502 1 CA CA . F 4 EDO A 1 503 1 EDO EDO . G 2 CIT B 1 501 2 CIT CIT . H 3 CA B 1 502 2 CA CA . I 4 EDO B 1 503 2 EDO EDO . J 4 EDO B 1 504 3 EDO EDO . K 2 CIT C 1 501 3 CIT CIT . L 3 CA C 1 502 3 CA CA . M 5 HOH A 1 601 9 HOH HOH . M 5 HOH A 2 602 24 HOH HOH . M 5 HOH A 3 603 40 HOH HOH . M 5 HOH A 4 604 20 HOH HOH . M 5 HOH A 5 605 16 HOH HOH . M 5 HOH A 6 606 30 HOH HOH . M 5 HOH A 7 607 48 HOH HOH . M 5 HOH A 8 608 25 HOH HOH . M 5 HOH A 9 609 28 HOH HOH . M 5 HOH A 10 610 7 HOH HOH . M 5 HOH A 11 611 49 HOH HOH . M 5 HOH A 12 612 5 HOH HOH . M 5 HOH A 13 613 33 HOH HOH . M 5 HOH A 14 614 17 HOH HOH . M 5 HOH A 15 615 52 HOH HOH . M 5 HOH A 16 616 47 HOH HOH . M 5 HOH A 17 617 15 HOH HOH . M 5 HOH A 18 618 46 HOH HOH . M 5 HOH A 19 619 50 HOH HOH . M 5 HOH A 20 620 18 HOH HOH . M 5 HOH A 21 621 42 HOH HOH . M 5 HOH A 22 622 51 HOH HOH . M 5 HOH A 23 623 39 HOH HOH . M 5 HOH A 24 624 43 HOH HOH . N 5 HOH B 1 601 27 HOH HOH . N 5 HOH B 2 602 32 HOH HOH . N 5 HOH B 3 603 22 HOH HOH . N 5 HOH B 4 604 44 HOH HOH . N 5 HOH B 5 605 62 HOH HOH . N 5 HOH B 6 606 26 HOH HOH . N 5 HOH B 7 607 21 HOH HOH . N 5 HOH B 8 608 1 HOH HOH . N 5 HOH B 9 609 12 HOH HOH . N 5 HOH B 10 610 2 HOH HOH . N 5 HOH B 11 611 23 HOH HOH . N 5 HOH B 12 612 38 HOH HOH . N 5 HOH B 13 613 14 HOH HOH . N 5 HOH B 14 614 3 HOH HOH . N 5 HOH B 15 615 13 HOH HOH . N 5 HOH B 16 616 61 HOH HOH . N 5 HOH B 17 617 37 HOH HOH . N 5 HOH B 18 618 45 HOH HOH . N 5 HOH B 19 619 34 HOH HOH . N 5 HOH B 20 620 35 HOH HOH . N 5 HOH B 21 621 63 HOH HOH . O 5 HOH C 1 601 4 HOH HOH . O 5 HOH C 2 602 19 HOH HOH . O 5 HOH C 3 603 10 HOH HOH . O 5 HOH C 4 604 36 HOH HOH . O 5 HOH C 5 605 8 HOH HOH . O 5 HOH C 6 606 31 HOH HOH . O 5 HOH C 7 607 11 HOH HOH . O 5 HOH C 8 608 58 HOH HOH . O 5 HOH C 9 609 6 HOH HOH . O 5 HOH C 10 610 60 HOH HOH . O 5 HOH C 11 611 59 HOH HOH . O 5 HOH C 12 612 56 HOH HOH . O 5 HOH C 13 613 54 HOH HOH . O 5 HOH C 14 614 57 HOH HOH . O 5 HOH C 15 615 55 HOH HOH . O 5 HOH C 16 616 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 166.539 178.416 78.479 1 59.78 ? C1 EDO 503 B 1 HETATM 2 O O1 EDO . . . I 4 166.517 178.889 77.12 1 55.05 ? O1 EDO 503 B 1 HETATM 3 C C2 EDO . . . I 4 166.835 179.514 79.489 1 62.47 ? C2 EDO 503 B 1 HETATM 4 O O2 EDO . . . I 4 165.599 179.863 80.131 1 65.99 ? O2 EDO 503 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #