data_6BIC
#
_model_server_result.job_id            OwDx0SCwo6HggD24y_Pn9w 
_model_server_result.datetime_utc      '2024-11-22 02:38:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bic 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6BIC 
#
_exptl.entry_id    6BIC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              557.642 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BIC 
_cell.length_a            37.602 
_cell.length_b            66.271 
_cell.length_c            125.283 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BIC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 146 A CYS 139 1_555 C C02 5LH . A 5LH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale2 B SG CYS 146 B CYS 139 1_555 D C02 5LH . B 5LH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
#
_chem_comp.formula           'C27 H39 N7 O6' 
_chem_comp.formula_weight    557.642 
_chem_comp.id                5LH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O27 C26 5LH doub 1 n n 
C26 O35 5LH sing 2 n n 
C26 N25 5LH sing 3 n n 
N25 C24 5LH sing 4 n n 
O37 C36 5LH doub 5 n n 
O40 C15 5LH doub 6 n n 
C24 C36 5LH sing 7 n n 
C24 C23 5LH sing 8 n n 
C36 N11 5LH sing 9 n n 
C10 C08 5LH sing 10 n n 
N38 N39 5LH doub 11 n y 
N38 C22 5LH sing 12 n y 
N39 N20 5LH sing 13 n y 
C15 N16 5LH sing 14 n n 
C15 C14 5LH sing 15 n n 
N16 C17 5LH sing 16 n n 
C18 C17 5LH sing 17 n n 
C18 C19 5LH sing 18 n n 
N11 C06 5LH sing 19 n n 
C22 C23 5LH sing 20 n n 
C22 C21 5LH doub 21 n y 
C06 C05 5LH sing 22 n n 
C06 C07 5LH sing 23 n n 
N20 C19 5LH sing 24 n n 
N20 C21 5LH sing 25 n y 
C14 C13 5LH sing 26 n n 
C08 C07 5LH sing 27 n n 
C08 C09 5LH sing 28 n n 
C13 C03 5LH sing 29 n n 
N04 C05 5LH sing 30 n n 
N04 C03 5LH sing 31 n n 
C05 O12 5LH doub 32 n n 
C03 C02 5LH sing 33 n n 
C02 O01 5LH sing 34 n n 
N16 H1 5LH sing 35 n n 
C17 H2 5LH sing 36 n n 
C17 H3 5LH sing 37 n n 
C18 H4 5LH sing 38 n n 
C18 H5 5LH sing 39 n n 
C19 H6 5LH sing 40 n n 
C19 H7 5LH sing 41 n n 
C21 H8 5LH sing 42 n n 
C23 H9 5LH sing 43 n n 
C23 H10 5LH sing 44 n n 
C24 H11 5LH sing 45 n n 
N25 H12 5LH sing 46 n n 
N11 H14 5LH sing 47 n n 
C06 H15 5LH sing 48 n n 
C07 H16 5LH sing 49 n n 
C07 H17 5LH sing 50 n n 
C08 H18 5LH sing 51 n n 
C10 H19 5LH sing 52 n n 
C10 H20 5LH sing 53 n n 
C10 H21 5LH sing 54 n n 
C09 H22 5LH sing 55 n n 
C09 H23 5LH sing 56 n n 
C09 H24 5LH sing 57 n n 
N04 H25 5LH sing 58 n n 
C03 H26 5LH sing 59 n n 
C13 H27 5LH sing 60 n n 
C13 H28 5LH sing 61 n n 
C14 H29 5LH sing 62 n n 
C14 H30 5LH sing 63 n n 
C02 H31 5LH sing 64 n n 
C02 H32 5LH sing 65 n n 
O01 H33 5LH sing 66 n n 
O35 C1 5LH sing 67 n n 
C1 C2 5LH sing 68 n n 
C2 C3 5LH doub 69 n y 
C3 C4 5LH sing 70 n y 
C4 C5 5LH doub 71 n y 
C5 C6 5LH sing 72 n y 
C6 C7 5LH doub 73 n y 
C7 C2 5LH sing 74 n y 
C1 H13 5LH sing 75 n n 
C1 H34 5LH sing 76 n n 
C3 H35 5LH sing 77 n n 
C4 H36 5LH sing 78 n n 
C5 H37 5LH sing 79 n n 
C6 H38 5LH sing 80 n n 
C7 H39 5LH sing 81 n n 
#
_atom_sites.entry_id                     6BIC 
_atom_sites.fract_transf_matrix[1][1]    0.026594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5LH A 1 201 1 5LH P19 . 
D 2 5LH B 1 201 2 5LH P19 . 
E 3 HOH A 1 301 15 HOH HOH . 
E 3 HOH A 2 302 40 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
E 3 HOH A 4 304 13 HOH HOH . 
E 3 HOH A 5 305 2 HOH HOH . 
E 3 HOH A 6 306 9 HOH HOH . 
E 3 HOH A 7 307 18 HOH HOH . 
E 3 HOH A 8 308 34 HOH HOH . 
E 3 HOH A 9 309 42 HOH HOH . 
E 3 HOH A 10 310 12 HOH HOH . 
E 3 HOH A 11 311 27 HOH HOH . 
E 3 HOH A 12 312 36 HOH HOH . 
E 3 HOH A 13 313 22 HOH HOH . 
E 3 HOH A 14 314 11 HOH HOH . 
E 3 HOH A 15 315 20 HOH HOH . 
E 3 HOH A 16 316 28 HOH HOH . 
E 3 HOH A 17 317 25 HOH HOH . 
E 3 HOH A 18 318 5 HOH HOH . 
E 3 HOH A 19 319 37 HOH HOH . 
E 3 HOH A 20 320 43 HOH HOH . 
E 3 HOH A 21 321 24 HOH HOH . 
E 3 HOH A 22 322 39 HOH HOH . 
F 3 HOH B 1 301 10 HOH HOH . 
F 3 HOH B 2 302 33 HOH HOH . 
F 3 HOH B 3 303 1 HOH HOH . 
F 3 HOH B 4 304 29 HOH HOH . 
F 3 HOH B 5 305 30 HOH HOH . 
F 3 HOH B 6 306 6 HOH HOH . 
F 3 HOH B 7 307 26 HOH HOH . 
F 3 HOH B 8 308 31 HOH HOH . 
F 3 HOH B 9 309 35 HOH HOH . 
F 3 HOH B 10 310 7 HOH HOH . 
F 3 HOH B 11 311 14 HOH HOH . 
F 3 HOH B 12 312 3 HOH HOH . 
F 3 HOH B 13 313 17 HOH HOH . 
F 3 HOH B 14 314 16 HOH HOH . 
F 3 HOH B 15 315 8 HOH HOH . 
F 3 HOH B 16 316 19 HOH HOH . 
F 3 HOH B 17 317 23 HOH HOH . 
F 3 HOH B 18 318 21 HOH HOH . 
F 3 HOH B 19 319 38 HOH HOH . 
F 3 HOH B 20 320 41 HOH HOH . 
F 3 HOH B 21 321 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C26 5LH . . . C 2 40.001 67.423 -10.131 1 47.38 ? C26 5LH 201 A 1 
HETATM 2 O O27 5LH . . . C 2 40.417 67.965 -11.107 1 52.05 ? O27 5LH 201 A 1 
HETATM 3 O O35 5LH . . . C 2 39.443 66.108 -10.249 1 62.73 ? O35 5LH 201 A 1 
HETATM 4 C C1 5LH . . . C 2 40.16 65.093 -9.563 1 54.75 ? C1 5LH 201 A 1 
HETATM 5 C C2 5LH . . . C 2 40.86 64.197 -10.613 1 55.18 ? C2 5LH 201 A 1 
HETATM 6 C C3 5LH . . . C 2 40.816 64.53 -11.965 1 58.98 ? C3 5LH 201 A 1 
HETATM 7 C C4 5LH . . . C 2 41.459 63.727 -12.913 1 57.09 ? C4 5LH 201 A 1 
HETATM 8 C C5 5LH . . . C 2 42.152 62.598 -12.501 1 56.02 ? C5 5LH 201 A 1 
HETATM 9 C C6 5LH . . . C 2 42.199 62.268 -11.143 1 59.47 ? C6 5LH 201 A 1 
HETATM 10 C C7 5LH . . . C 2 41.554 63.067 -10.204 1 50.65 ? C7 5LH 201 A 1 
HETATM 11 N N16 5LH . . . C 2 39.129 68.923 -2.04 1 44.78 ? N16 5LH 201 A 1 
HETATM 12 C C17 5LH . . . C 2 38.437 70.121 -2.505 1 55.18 ? C17 5LH 201 A 1 
HETATM 13 C C18 5LH . . . C 2 37.071 69.784 -3.143 1 52.56 ? C18 5LH 201 A 1 
HETATM 14 C C19 5LH . . . C 2 36.783 70.803 -4.213 1 54.25 ? C19 5LH 201 A 1 
HETATM 15 N N20 5LH . . . C 2 37.439 70.39 -5.448 1 58.46 ? N20 5LH 201 A 1 
HETATM 16 C C21 5LH . . . C 2 38.391 71.027 -6.173 1 53.14 ? C21 5LH 201 A 1 
HETATM 17 C C22 5LH . . . C 2 38.771 70.264 -7.355 1 41.84 ? C22 5LH 201 A 1 
HETATM 18 C C23 5LH . . . C 2 39.804 70.574 -8.47 1 51.59 ? C23 5LH 201 A 1 
HETATM 19 C C24 5LH . . . C 2 40.772 69.431 -8.769 1 46.95 ? C24 5LH 201 A 1 
HETATM 20 N N25 5LH . . . C 2 40.083 68.138 -8.82 1 44.15 ? N25 5LH 201 A 1 
HETATM 21 C C36 5LH . . . C 2 41.888 69.437 -7.716 1 43.47 ? C36 5LH 201 A 1 
HETATM 22 O O37 5LH . . . C 2 41.84 68.771 -6.728 1 41.2 ? O37 5LH 201 A 1 
HETATM 23 N N38 5LH . . . C 2 37.989 69.2 -7.222 1 55.91 ? N38 5LH 201 A 1 
HETATM 24 N N39 5LH . . . C 2 37.224 69.276 -6.119 1 61.02 ? N39 5LH 201 A 1 
HETATM 25 N N11 5LH . . . C 2 43.044 70.316 -7.977 1 45.28 ? N11 5LH 201 A 1 
HETATM 26 C C06 5LH . . . C 2 44.149 70.384 -7.03 1 36.78 ? C06 5LH 201 A 1 
HETATM 27 C C05 5LH . . . C 2 43.599 70.948 -5.719 1 36.12 ? C05 5LH 201 A 1 
HETATM 28 O O12 5LH . . . C 2 42.672 71.699 -5.717 1 35.62 ? O12 5LH 201 A 1 
HETATM 29 C C07 5LH . . . C 2 45.262 71.262 -7.573 1 31.42 ? C07 5LH 201 A 1 
HETATM 30 C C08 5LH . . . C 2 45.935 70.632 -8.832 1 36.99 ? C08 5LH 201 A 1 
HETATM 31 C C10 5LH . . . C 2 46.579 69.276 -8.574 1 33.94 ? C10 5LH 201 A 1 
HETATM 32 C C09 5LH . . . C 2 46.959 71.596 -9.407 1 32.68 ? C09 5LH 201 A 1 
HETATM 33 N N04 5LH . . . C 2 44.234 70.508 -4.472 1 31.45 ? N04 5LH 201 A 1 
HETATM 34 C C03 5LH . . . C 2 43.729 71.007 -3.185 1 32.57 ? C03 5LH 201 A 1 
HETATM 35 C C13 5LH . . . C 2 42.927 69.883 -2.507 1 37.16 ? C13 5LH 201 A 1 
HETATM 36 C C14 5LH . . . C 2 41.413 70.111 -2.543 1 39 ? C14 5LH 201 A 1 
HETATM 37 C C15 5LH . . . C 2 40.587 68.892 -2.036 1 36.9 ? C15 5LH 201 A 1 
HETATM 38 O O40 5LH . . . C 2 41.122 67.908 -1.648 1 35.65 ? O40 5LH 201 A 1 
HETATM 39 C C02 5LH . . . C 2 44.882 71.424 -2.288 1 27.06 ? C02 5LH 201 A 1 
HETATM 40 O O01 5LH . . . C 2 45.552 72.497 -2.897 1 30.12 ? O01 5LH 201 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#