data_6BIC
#
_model_server_result.job_id            W3FqAjta_SvsjbzIe2-rVw 
_model_server_result.datetime_utc      '2024-11-22 03:16:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bic 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6BIC 
#
_exptl.entry_id    6BIC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              557.642 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BIC 
_cell.length_a            37.602 
_cell.length_b            66.271 
_cell.length_c            125.283 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BIC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 146 A CYS 139 1_555 C C02 5LH . A 5LH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
covale ? covale2 B SG CYS 146 B CYS 139 1_555 D C02 5LH . B 5LH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
#
_chem_comp.formula           'C27 H39 N7 O6' 
_chem_comp.formula_weight    557.642 
_chem_comp.id                5LH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(phenylmethyl) ~{N}-[(9~{S},12~{S},15~{S})-9-(hydroxymethyl)-12-(2-methylpropyl)-6,11,14-tris(oxidanylidene)-1,5,10,13,18,19-hexazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O27 C26 5LH doub 1 n n 
C26 O35 5LH sing 2 n n 
C26 N25 5LH sing 3 n n 
N25 C24 5LH sing 4 n n 
O37 C36 5LH doub 5 n n 
O40 C15 5LH doub 6 n n 
C24 C36 5LH sing 7 n n 
C24 C23 5LH sing 8 n n 
C36 N11 5LH sing 9 n n 
C10 C08 5LH sing 10 n n 
N38 N39 5LH doub 11 n y 
N38 C22 5LH sing 12 n y 
N39 N20 5LH sing 13 n y 
C15 N16 5LH sing 14 n n 
C15 C14 5LH sing 15 n n 
N16 C17 5LH sing 16 n n 
C18 C17 5LH sing 17 n n 
C18 C19 5LH sing 18 n n 
N11 C06 5LH sing 19 n n 
C22 C23 5LH sing 20 n n 
C22 C21 5LH doub 21 n y 
C06 C05 5LH sing 22 n n 
C06 C07 5LH sing 23 n n 
N20 C19 5LH sing 24 n n 
N20 C21 5LH sing 25 n y 
C14 C13 5LH sing 26 n n 
C08 C07 5LH sing 27 n n 
C08 C09 5LH sing 28 n n 
C13 C03 5LH sing 29 n n 
N04 C05 5LH sing 30 n n 
N04 C03 5LH sing 31 n n 
C05 O12 5LH doub 32 n n 
C03 C02 5LH sing 33 n n 
C02 O01 5LH sing 34 n n 
N16 H1 5LH sing 35 n n 
C17 H2 5LH sing 36 n n 
C17 H3 5LH sing 37 n n 
C18 H4 5LH sing 38 n n 
C18 H5 5LH sing 39 n n 
C19 H6 5LH sing 40 n n 
C19 H7 5LH sing 41 n n 
C21 H8 5LH sing 42 n n 
C23 H9 5LH sing 43 n n 
C23 H10 5LH sing 44 n n 
C24 H11 5LH sing 45 n n 
N25 H12 5LH sing 46 n n 
N11 H14 5LH sing 47 n n 
C06 H15 5LH sing 48 n n 
C07 H16 5LH sing 49 n n 
C07 H17 5LH sing 50 n n 
C08 H18 5LH sing 51 n n 
C10 H19 5LH sing 52 n n 
C10 H20 5LH sing 53 n n 
C10 H21 5LH sing 54 n n 
C09 H22 5LH sing 55 n n 
C09 H23 5LH sing 56 n n 
C09 H24 5LH sing 57 n n 
N04 H25 5LH sing 58 n n 
C03 H26 5LH sing 59 n n 
C13 H27 5LH sing 60 n n 
C13 H28 5LH sing 61 n n 
C14 H29 5LH sing 62 n n 
C14 H30 5LH sing 63 n n 
C02 H31 5LH sing 64 n n 
C02 H32 5LH sing 65 n n 
O01 H33 5LH sing 66 n n 
O35 C1 5LH sing 67 n n 
C1 C2 5LH sing 68 n n 
C2 C3 5LH doub 69 n y 
C3 C4 5LH sing 70 n y 
C4 C5 5LH doub 71 n y 
C5 C6 5LH sing 72 n y 
C6 C7 5LH doub 73 n y 
C7 C2 5LH sing 74 n y 
C1 H13 5LH sing 75 n n 
C1 H34 5LH sing 76 n n 
C3 H35 5LH sing 77 n n 
C4 H36 5LH sing 78 n n 
C5 H37 5LH sing 79 n n 
C6 H38 5LH sing 80 n n 
C7 H39 5LH sing 81 n n 
#
_atom_sites.entry_id                     6BIC 
_atom_sites.fract_transf_matrix[1][1]    0.026594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5LH A 1 201 1 5LH P19 . 
D 2 5LH B 1 201 2 5LH P19 . 
E 3 HOH A 1 301 15 HOH HOH . 
E 3 HOH A 2 302 40 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
E 3 HOH A 4 304 13 HOH HOH . 
E 3 HOH A 5 305 2 HOH HOH . 
E 3 HOH A 6 306 9 HOH HOH . 
E 3 HOH A 7 307 18 HOH HOH . 
E 3 HOH A 8 308 34 HOH HOH . 
E 3 HOH A 9 309 42 HOH HOH . 
E 3 HOH A 10 310 12 HOH HOH . 
E 3 HOH A 11 311 27 HOH HOH . 
E 3 HOH A 12 312 36 HOH HOH . 
E 3 HOH A 13 313 22 HOH HOH . 
E 3 HOH A 14 314 11 HOH HOH . 
E 3 HOH A 15 315 20 HOH HOH . 
E 3 HOH A 16 316 28 HOH HOH . 
E 3 HOH A 17 317 25 HOH HOH . 
E 3 HOH A 18 318 5 HOH HOH . 
E 3 HOH A 19 319 37 HOH HOH . 
E 3 HOH A 20 320 43 HOH HOH . 
E 3 HOH A 21 321 24 HOH HOH . 
E 3 HOH A 22 322 39 HOH HOH . 
F 3 HOH B 1 301 10 HOH HOH . 
F 3 HOH B 2 302 33 HOH HOH . 
F 3 HOH B 3 303 1 HOH HOH . 
F 3 HOH B 4 304 29 HOH HOH . 
F 3 HOH B 5 305 30 HOH HOH . 
F 3 HOH B 6 306 6 HOH HOH . 
F 3 HOH B 7 307 26 HOH HOH . 
F 3 HOH B 8 308 31 HOH HOH . 
F 3 HOH B 9 309 35 HOH HOH . 
F 3 HOH B 10 310 7 HOH HOH . 
F 3 HOH B 11 311 14 HOH HOH . 
F 3 HOH B 12 312 3 HOH HOH . 
F 3 HOH B 13 313 17 HOH HOH . 
F 3 HOH B 14 314 16 HOH HOH . 
F 3 HOH B 15 315 8 HOH HOH . 
F 3 HOH B 16 316 19 HOH HOH . 
F 3 HOH B 17 317 23 HOH HOH . 
F 3 HOH B 18 318 21 HOH HOH . 
F 3 HOH B 19 319 38 HOH HOH . 
F 3 HOH B 20 320 41 HOH HOH . 
F 3 HOH B 21 321 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C26 5LH . . . D 2 60.995 87 37.06 1 54.51 ? C26 5LH 201 B 1 
HETATM 2 O O27 5LH . . . D 2 60.707 86.555 38.384 1 53.83 ? O27 5LH 201 B 1 
HETATM 3 O O35 5LH . . . D 2 62.047 87.502 36.818 1 57.13 ? O35 5LH 201 B 1 
HETATM 4 N N16 5LH . . . D 2 60.61 81.864 30.866 1 47.78 ? N16 5LH 201 B 1 
HETATM 5 C C17 5LH . . . D 2 61.725 82.7 30.421 1 50.4 ? C17 5LH 201 B 1 
HETATM 6 C C18 5LH . . . D 2 62.454 83.291 31.659 1 59.02 ? C18 5LH 201 B 1 
HETATM 7 C C19 5LH . . . D 2 63.072 84.633 31.348 1 67.44 ? C19 5LH 201 B 1 
HETATM 8 N N20 5LH . . . D 2 62.761 85.544 32.437 1 62.88 ? N20 5LH 201 B 1 
HETATM 9 C C21 5LH . . . D 2 61.828 86.52 32.492 1 58.52 ? C21 5LH 201 B 1 
HETATM 10 C C22 5LH . . . D 2 61.85 87.198 33.772 1 56.71 ? C22 5LH 201 B 1 
HETATM 11 C C23 5LH . . . D 2 60.985 88.365 34.308 1 65.47 ? C23 5LH 201 B 1 
HETATM 12 C C24 5LH . . . D 2 59.716 87.877 35.001 1 65.88 ? C24 5LH 201 B 1 
HETATM 13 N N25 5LH . . . D 2 59.967 86.818 35.985 1 63.67 ? N25 5LH 201 B 1 
HETATM 14 C C36 5LH . . . D 2 58.768 87.346 33.924 1 51.23 ? C36 5LH 201 B 1 
HETATM 15 O O37 5LH . . . D 2 58.922 86.276 33.433 1 48.05 ? O37 5LH 201 B 1 
HETATM 16 N N38 5LH . . . D 2 62.823 86.537 34.39 1 68.26 ? N38 5LH 201 B 1 
HETATM 17 N N39 5LH . . . D 2 63.348 85.581 33.611 1 66.23 ? N39 5LH 201 B 1 
HETATM 18 N N11 5LH . . . D 2 57.663 88.227 33.52 1 55.55 ? N11 5LH 201 B 1 
HETATM 19 C C06 5LH . . . D 2 56.68 87.848 32.511 1 47.84 ? C06 5LH 201 B 1 
HETATM 20 C C05 5LH . . . D 2 57.274 87.102 31.299 1 46.67 ? C05 5LH 201 B 1 
HETATM 21 O O12 5LH . . . D 2 58.341 87.376 30.851 1 46.59 ? O12 5LH 201 B 1 
HETATM 22 C C07 5LH . . . D 2 56.039 89.14 32.034 1 46.95 ? C07 5LH 201 B 1 
HETATM 23 C C08 5LH . . . D 2 55.261 89.904 33.142 1 51.69 ? C08 5LH 201 B 1 
HETATM 24 C C10 5LH . . . D 2 54.353 90.958 32.523 1 55.97 ? C10 5LH 201 B 1 
HETATM 25 C C09 5LH . . . D 2 54.464 88.963 34.042 1 51.09 ? C09 5LH 201 B 1 
HETATM 26 N N04 5LH . . . D 2 56.457 86.024 30.718 1 42.79 ? N04 5LH 201 B 1 
HETATM 27 C C03 5LH . . . D 2 56.904 85.253 29.564 1 40 ? C03 5LH 201 B 1 
HETATM 28 C C13 5LH . . . D 2 57.372 83.851 29.987 1 37.2 ? C13 5LH 201 B 1 
HETATM 29 C C14 5LH . . . D 2 58.829 83.79 30.444 1 39.39 ? C14 5LH 201 B 1 
HETATM 30 C C15 5LH . . . D 2 59.233 82.356 30.89 1 40.55 ? C15 5LH 201 B 1 
HETATM 31 O O40 5LH . . . D 2 58.399 81.607 31.269 1 40.9 ? O40 5LH 201 B 1 
HETATM 32 C C02 5LH . . . D 2 55.718 85.16 28.626 1 36.23 ? C02 5LH 201 B 1 
HETATM 33 O O01 5LH . . . D 2 55.369 86.468 28.271 1 34 ? O01 5LH 201 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           33 
#