data_6BIK # _model_server_result.job_id DVBC6fhqbo8nN9-gYaC9cQ _model_server_result.datetime_utc '2024-12-13 10:00:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 6BIK # _exptl.entry_id 6BIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BIK _cell.length_a 108.016 _cell.length_b 108.016 _cell.length_c 41.631 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 89 A GLY 480 1_555 A N OCS 90 A OCS 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C OCS 90 A OCS 481 1_555 A N LEU 91 A LEU 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 6BIK _atom_sites.fract_transf_matrix[1][1] 0.009258 _atom_sites.fract_transf_matrix[1][2] 0.005345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 3 DTJ A 1 703 1 DTJ DRG . E 2 SO4 A 1 704 1 SO4 SO4 . F 4 GOL A 1 705 1 GOL GOL . G 5 HOH A 1 801 101 HOH HOH . G 5 HOH A 2 802 25 HOH HOH . G 5 HOH A 3 803 81 HOH HOH . G 5 HOH A 4 804 9 HOH HOH . G 5 HOH A 5 805 28 HOH HOH . G 5 HOH A 6 806 162 HOH HOH . G 5 HOH A 7 807 26 HOH HOH . G 5 HOH A 8 808 87 HOH HOH . G 5 HOH A 9 809 38 HOH HOH . G 5 HOH A 10 810 5 HOH HOH . G 5 HOH A 11 811 146 HOH HOH . G 5 HOH A 12 812 78 HOH HOH . G 5 HOH A 13 813 66 HOH HOH . G 5 HOH A 14 814 73 HOH HOH . G 5 HOH A 15 815 60 HOH HOH . G 5 HOH A 16 816 11 HOH HOH . G 5 HOH A 17 817 4 HOH HOH . G 5 HOH A 18 818 17 HOH HOH . G 5 HOH A 19 819 14 HOH HOH . G 5 HOH A 20 820 34 HOH HOH . G 5 HOH A 21 821 99 HOH HOH . G 5 HOH A 22 822 20 HOH HOH . G 5 HOH A 23 823 30 HOH HOH . G 5 HOH A 24 824 113 HOH HOH . G 5 HOH A 25 825 29 HOH HOH . G 5 HOH A 26 826 59 HOH HOH . G 5 HOH A 27 827 93 HOH HOH . G 5 HOH A 28 828 138 HOH HOH . G 5 HOH A 29 829 102 HOH HOH . G 5 HOH A 30 830 72 HOH HOH . G 5 HOH A 31 831 3 HOH HOH . G 5 HOH A 32 832 54 HOH HOH . G 5 HOH A 33 833 21 HOH HOH . G 5 HOH A 34 834 47 HOH HOH . G 5 HOH A 35 835 158 HOH HOH . G 5 HOH A 36 836 116 HOH HOH . G 5 HOH A 37 837 76 HOH HOH . G 5 HOH A 38 838 74 HOH HOH . G 5 HOH A 39 839 58 HOH HOH . G 5 HOH A 40 840 7 HOH HOH . G 5 HOH A 41 841 82 HOH HOH . G 5 HOH A 42 842 85 HOH HOH . G 5 HOH A 43 843 114 HOH HOH . G 5 HOH A 44 844 122 HOH HOH . G 5 HOH A 45 845 27 HOH HOH . G 5 HOH A 46 846 86 HOH HOH . G 5 HOH A 47 847 43 HOH HOH . G 5 HOH A 48 848 92 HOH HOH . G 5 HOH A 49 849 179 HOH HOH . G 5 HOH A 50 850 3 HOH HOH . G 5 HOH A 51 851 41 HOH HOH . G 5 HOH A 52 852 182 HOH HOH . G 5 HOH A 53 853 19 HOH HOH . G 5 HOH A 54 854 7 HOH HOH . G 5 HOH A 55 855 39 HOH HOH . G 5 HOH A 56 856 15 HOH HOH . G 5 HOH A 57 857 75 HOH HOH . G 5 HOH A 58 858 83 HOH HOH . G 5 HOH A 59 859 107 HOH HOH . G 5 HOH A 60 860 130 HOH HOH . G 5 HOH A 61 861 50 HOH HOH . G 5 HOH A 62 862 174 HOH HOH . G 5 HOH A 63 863 70 HOH HOH . G 5 HOH A 64 864 166 HOH HOH . G 5 HOH A 65 865 4 HOH HOH . G 5 HOH A 66 866 57 HOH HOH . G 5 HOH A 67 867 97 HOH HOH . G 5 HOH A 68 868 33 HOH HOH . G 5 HOH A 69 869 8 HOH HOH . G 5 HOH A 70 870 69 HOH HOH . G 5 HOH A 71 871 48 HOH HOH . G 5 HOH A 72 872 79 HOH HOH . G 5 HOH A 73 873 22 HOH HOH . G 5 HOH A 74 874 32 HOH HOH . G 5 HOH A 75 875 11 HOH HOH . G 5 HOH A 76 876 169 HOH HOH . G 5 HOH A 77 877 18 HOH HOH . G 5 HOH A 78 878 100 HOH HOH . G 5 HOH A 79 879 55 HOH HOH . G 5 HOH A 80 880 1 HOH HOH . G 5 HOH A 81 881 115 HOH HOH . G 5 HOH A 82 882 61 HOH HOH . G 5 HOH A 83 883 6 HOH HOH . G 5 HOH A 84 884 178 HOH HOH . G 5 HOH A 85 885 5 HOH HOH . G 5 HOH A 86 886 108 HOH HOH . G 5 HOH A 87 887 171 HOH HOH . G 5 HOH A 88 888 136 HOH HOH . G 5 HOH A 89 889 35 HOH HOH . G 5 HOH A 90 890 12 HOH HOH . G 5 HOH A 91 891 12 HOH HOH . G 5 HOH A 92 892 68 HOH HOH . G 5 HOH A 93 893 126 HOH HOH . G 5 HOH A 94 894 144 HOH HOH . G 5 HOH A 95 895 164 HOH HOH . G 5 HOH A 96 896 40 HOH HOH . G 5 HOH A 97 897 161 HOH HOH . G 5 HOH A 98 898 23 HOH HOH . G 5 HOH A 99 899 95 HOH HOH . G 5 HOH A 100 900 104 HOH HOH . G 5 HOH A 101 901 117 HOH HOH . G 5 HOH A 102 902 172 HOH HOH . G 5 HOH A 103 903 53 HOH HOH . G 5 HOH A 104 904 121 HOH HOH . G 5 HOH A 105 905 37 HOH HOH . G 5 HOH A 106 906 98 HOH HOH . G 5 HOH A 107 907 103 HOH HOH . G 5 HOH A 108 908 45 HOH HOH . G 5 HOH A 109 909 9 HOH HOH . G 5 HOH A 110 910 31 HOH HOH . G 5 HOH A 111 911 91 HOH HOH . G 5 HOH A 112 912 150 HOH HOH . G 5 HOH A 113 913 134 HOH HOH . G 5 HOH A 114 914 49 HOH HOH . G 5 HOH A 115 915 147 HOH HOH . G 5 HOH A 116 916 110 HOH HOH . G 5 HOH A 117 917 157 HOH HOH . G 5 HOH A 118 918 44 HOH HOH . G 5 HOH A 119 919 141 HOH HOH . G 5 HOH A 120 920 24 HOH HOH . G 5 HOH A 121 921 106 HOH HOH . G 5 HOH A 122 922 148 HOH HOH . G 5 HOH A 123 923 132 HOH HOH . G 5 HOH A 124 924 118 HOH HOH . G 5 HOH A 125 925 175 HOH HOH . G 5 HOH A 126 926 8 HOH HOH . G 5 HOH A 127 927 10 HOH HOH . G 5 HOH A 128 928 62 HOH HOH . G 5 HOH A 129 929 46 HOH HOH . G 5 HOH A 130 930 140 HOH HOH . G 5 HOH A 131 931 36 HOH HOH . G 5 HOH A 132 932 176 HOH HOH . G 5 HOH A 133 933 133 HOH HOH . G 5 HOH A 134 934 111 HOH HOH . G 5 HOH A 135 935 13 HOH HOH . G 5 HOH A 136 936 52 HOH HOH . G 5 HOH A 137 937 77 HOH HOH . G 5 HOH A 138 938 139 HOH HOH . G 5 HOH A 139 939 109 HOH HOH . G 5 HOH A 140 940 80 HOH HOH . G 5 HOH A 141 941 96 HOH HOH . G 5 HOH A 142 942 170 HOH HOH . G 5 HOH A 143 943 120 HOH HOH . G 5 HOH A 144 944 129 HOH HOH . G 5 HOH A 145 945 14 HOH HOH . G 5 HOH A 146 946 183 HOH HOH . G 5 HOH A 147 947 154 HOH HOH . G 5 HOH A 148 948 135 HOH HOH . G 5 HOH A 149 949 149 HOH HOH . G 5 HOH A 150 950 90 HOH HOH . G 5 HOH A 151 951 94 HOH HOH . G 5 HOH A 152 952 160 HOH HOH . G 5 HOH A 153 953 2 HOH HOH . G 5 HOH A 154 954 127 HOH HOH . G 5 HOH A 155 955 167 HOH HOH . G 5 HOH A 156 956 65 HOH HOH . G 5 HOH A 157 957 10 HOH HOH . G 5 HOH A 158 958 51 HOH HOH . G 5 HOH A 159 959 64 HOH HOH . G 5 HOH A 160 960 89 HOH HOH . G 5 HOH A 161 961 13 HOH HOH . G 5 HOH A 162 962 128 HOH HOH . G 5 HOH A 163 963 125 HOH HOH . G 5 HOH A 164 964 63 HOH HOH . G 5 HOH A 165 965 124 HOH HOH . G 5 HOH A 166 966 67 HOH HOH . G 5 HOH A 167 967 181 HOH HOH . G 5 HOH A 168 968 152 HOH HOH . G 5 HOH A 169 969 155 HOH HOH . G 5 HOH A 170 970 143 HOH HOH . G 5 HOH A 171 971 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 124.145 -32.01 13.749 1 49.11 ? C1 GOL 705 A 1 HETATM 2 O O1 GOL . . . F 4 124.821 -33.243 13.767 1 79.81 ? O1 GOL 705 A 1 HETATM 3 C C2 GOL . . . F 4 124.093 -31.374 15.123 1 33.23 ? C2 GOL 705 A 1 HETATM 4 O O2 GOL . . . F 4 123.073 -30.429 15.05 1 33.2 ? O2 GOL 705 A 1 HETATM 5 C C3 GOL . . . F 4 123.662 -32.319 16.232 1 48.03 ? C3 GOL 705 A 1 HETATM 6 O O3 GOL . . . F 4 122.254 -32.259 16.375 1 45.16 ? O3 GOL 705 A 1 HETATM 7 H H11 GOL . . . F 4 123.13 -32.161 13.384 1 58.93 ? H11 GOL 705 A 1 HETATM 8 H H12 GOL . . . F 4 124.649 -31.334 13.059 1 58.93 ? H12 GOL 705 A 1 HETATM 9 H HO1 GOL . . . F 4 124.777 -33.652 12.878 1 95.77 ? HO1 GOL 705 A 1 HETATM 10 H H2 GOL . . . F 4 125.048 -30.91 15.366 1 39.87 ? H2 GOL 705 A 1 HETATM 11 H HO2 GOL . . . F 4 122.225 -30.878 14.852 1 39.84 ? HO2 GOL 705 A 1 HETATM 12 H H31 GOL . . . F 4 124.142 -32.034 17.169 1 57.63 ? H31 GOL 705 A 1 HETATM 13 H H32 GOL . . . F 4 123.966 -33.338 15.989 1 57.63 ? H32 GOL 705 A 1 HETATM 14 H HO3 GOL . . . F 4 122.029 -32.064 17.309 1 54.2 ? HO3 GOL 705 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #