data_6BIR
#
_model_server_result.job_id            3CYYI_kD57CCKWc4DgH3_A 
_model_server_result.datetime_utc      '2024-12-04 06:34:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    6BIR 
#
_exptl.entry_id    6BIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BIR 
_cell.length_a            67.46 
_cell.length_b            183.01 
_cell.length_c            77.08 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 107 A CYS 107 1_555 A SG CYS 163 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 17 B CYS 15 1_555 B SG CYS 81 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf3 B SG CYS 119 B CYS 117 1_555 B SG CYS 175 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
covale ? covale1 A ND2 ASN 78 A ASN 78 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale2 A ND2 ASN 118 A ASN 118 1_555 E C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale3 C C LEU 5 C LEU 5 1_555 C N CIR 6 C CIR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? 
covale ? covale4 C C CIR 6 C CIR 6 1_555 C N GLU 7 C GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 261 n n 
C1 O1 NAG sing 262 n n 
C1 O5 NAG sing 263 n n 
C1 H1 NAG sing 264 n n 
C2 C3 NAG sing 265 n n 
C2 N2 NAG sing 266 n n 
C2 H2 NAG sing 267 n n 
C3 C4 NAG sing 268 n n 
C3 O3 NAG sing 269 n n 
C3 H3 NAG sing 270 n n 
C4 C5 NAG sing 271 n n 
C4 O4 NAG sing 272 n n 
C4 H4 NAG sing 273 n n 
C5 C6 NAG sing 274 n n 
C5 O5 NAG sing 275 n n 
C5 H5 NAG sing 276 n n 
C6 O6 NAG sing 277 n n 
C6 H61 NAG sing 278 n n 
C6 H62 NAG sing 279 n n 
C7 C8 NAG sing 280 n n 
C7 N2 NAG sing 281 n n 
C7 O7 NAG doub 282 n n 
C8 H81 NAG sing 283 n n 
C8 H82 NAG sing 284 n n 
C8 H83 NAG sing 285 n n 
N2 HN2 NAG sing 286 n n 
O1 HO1 NAG sing 287 n n 
O3 HO3 NAG sing 288 n n 
O4 HO4 NAG sing 289 n n 
O6 HO6 NAG sing 290 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6BIR 
_atom_sites.fract_transf_matrix[1][1]    0.014824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005464 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 201 3 NAG NAG . 
E 4 NAG A 1 202 4 NAG NAG . 
F 5 HOH A 1 301 146 HOH HOH . 
F 5 HOH A 2 302 142 HOH HOH . 
F 5 HOH A 3 303 25 HOH HOH . 
F 5 HOH A 4 304 42 HOH HOH . 
F 5 HOH A 5 305 48 HOH HOH . 
F 5 HOH A 6 306 13 HOH HOH . 
F 5 HOH A 7 307 123 HOH HOH . 
F 5 HOH A 8 308 126 HOH HOH . 
F 5 HOH A 9 309 18 HOH HOH . 
F 5 HOH A 10 310 47 HOH HOH . 
F 5 HOH A 11 311 135 HOH HOH . 
F 5 HOH A 12 312 50 HOH HOH . 
F 5 HOH A 13 313 143 HOH HOH . 
F 5 HOH A 14 314 19 HOH HOH . 
F 5 HOH A 15 315 91 HOH HOH . 
F 5 HOH A 16 316 32 HOH HOH . 
F 5 HOH A 17 317 51 HOH HOH . 
F 5 HOH A 18 318 28 HOH HOH . 
F 5 HOH A 19 319 63 HOH HOH . 
F 5 HOH A 20 320 116 HOH HOH . 
F 5 HOH A 21 321 124 HOH HOH . 
F 5 HOH A 22 322 29 HOH HOH . 
F 5 HOH A 23 323 139 HOH HOH . 
F 5 HOH A 24 324 140 HOH HOH . 
F 5 HOH A 25 325 14 HOH HOH . 
F 5 HOH A 26 326 125 HOH HOH . 
F 5 HOH A 27 327 26 HOH HOH . 
F 5 HOH A 28 328 119 HOH HOH . 
F 5 HOH A 29 329 55 HOH HOH . 
F 5 HOH A 30 330 43 HOH HOH . 
F 5 HOH A 31 331 121 HOH HOH . 
F 5 HOH A 32 332 36 HOH HOH . 
F 5 HOH A 33 333 74 HOH HOH . 
F 5 HOH A 34 334 80 HOH HOH . 
F 5 HOH A 35 335 9 HOH HOH . 
F 5 HOH A 36 336 118 HOH HOH . 
F 5 HOH A 37 337 12 HOH HOH . 
F 5 HOH A 38 338 101 HOH HOH . 
F 5 HOH A 39 339 57 HOH HOH . 
F 5 HOH A 40 340 68 HOH HOH . 
F 5 HOH A 41 341 21 HOH HOH . 
F 5 HOH A 42 342 67 HOH HOH . 
F 5 HOH A 43 343 49 HOH HOH . 
F 5 HOH A 44 344 20 HOH HOH . 
F 5 HOH A 45 345 99 HOH HOH . 
F 5 HOH A 46 346 7 HOH HOH . 
F 5 HOH A 47 347 33 HOH HOH . 
F 5 HOH A 48 348 87 HOH HOH . 
F 5 HOH A 49 349 58 HOH HOH . 
F 5 HOH A 50 350 88 HOH HOH . 
F 5 HOH A 51 351 82 HOH HOH . 
F 5 HOH A 52 352 78 HOH HOH . 
F 5 HOH A 53 353 38 HOH HOH . 
F 5 HOH A 54 354 73 HOH HOH . 
F 5 HOH A 55 355 8 HOH HOH . 
F 5 HOH A 56 356 62 HOH HOH . 
F 5 HOH A 57 357 30 HOH HOH . 
F 5 HOH A 58 358 17 HOH HOH . 
F 5 HOH A 59 359 90 HOH HOH . 
F 5 HOH A 60 360 37 HOH HOH . 
F 5 HOH A 61 361 22 HOH HOH . 
F 5 HOH A 62 362 72 HOH HOH . 
F 5 HOH A 63 363 41 HOH HOH . 
F 5 HOH A 64 364 100 HOH HOH . 
F 5 HOH A 65 365 65 HOH HOH . 
F 5 HOH A 66 366 16 HOH HOH . 
F 5 HOH A 67 367 34 HOH HOH . 
F 5 HOH A 68 368 84 HOH HOH . 
F 5 HOH A 69 369 24 HOH HOH . 
F 5 HOH A 70 370 97 HOH HOH . 
F 5 HOH A 71 371 39 HOH HOH . 
F 5 HOH A 72 372 128 HOH HOH . 
F 5 HOH A 73 373 52 HOH HOH . 
F 5 HOH A 74 374 75 HOH HOH . 
F 5 HOH A 75 375 112 HOH HOH . 
F 5 HOH A 76 376 102 HOH HOH . 
F 5 HOH A 77 377 129 HOH HOH . 
F 5 HOH A 78 378 107 HOH HOH . 
F 5 HOH A 79 379 76 HOH HOH . 
F 5 HOH A 80 380 148 HOH HOH . 
F 5 HOH A 81 381 85 HOH HOH . 
F 5 HOH A 82 382 103 HOH HOH . 
G 5 HOH B 1 201 150 HOH HOH . 
G 5 HOH B 2 202 147 HOH HOH . 
G 5 HOH B 3 203 122 HOH HOH . 
G 5 HOH B 4 204 117 HOH HOH . 
G 5 HOH B 5 205 27 HOH HOH . 
G 5 HOH B 6 206 59 HOH HOH . 
G 5 HOH B 7 207 149 HOH HOH . 
G 5 HOH B 8 208 98 HOH HOH . 
G 5 HOH B 9 209 120 HOH HOH . 
G 5 HOH B 10 210 89 HOH HOH . 
G 5 HOH B 11 211 145 HOH HOH . 
G 5 HOH B 12 212 113 HOH HOH . 
G 5 HOH B 13 213 2 HOH HOH . 
G 5 HOH B 14 214 69 HOH HOH . 
G 5 HOH B 15 215 54 HOH HOH . 
G 5 HOH B 16 216 131 HOH HOH . 
G 5 HOH B 17 217 114 HOH HOH . 
G 5 HOH B 18 218 71 HOH HOH . 
G 5 HOH B 19 219 23 HOH HOH . 
G 5 HOH B 20 220 61 HOH HOH . 
G 5 HOH B 21 221 60 HOH HOH . 
G 5 HOH B 22 222 6 HOH HOH . 
G 5 HOH B 23 223 10 HOH HOH . 
G 5 HOH B 24 224 77 HOH HOH . 
G 5 HOH B 25 225 81 HOH HOH . 
G 5 HOH B 26 226 3 HOH HOH . 
G 5 HOH B 27 227 133 HOH HOH . 
G 5 HOH B 28 228 144 HOH HOH . 
G 5 HOH B 29 229 15 HOH HOH . 
G 5 HOH B 30 230 96 HOH HOH . 
G 5 HOH B 31 231 134 HOH HOH . 
G 5 HOH B 32 232 53 HOH HOH . 
G 5 HOH B 33 233 11 HOH HOH . 
G 5 HOH B 34 234 40 HOH HOH . 
G 5 HOH B 35 235 4 HOH HOH . 
G 5 HOH B 36 236 137 HOH HOH . 
G 5 HOH B 37 237 35 HOH HOH . 
G 5 HOH B 38 238 70 HOH HOH . 
G 5 HOH B 39 239 66 HOH HOH . 
G 5 HOH B 40 240 5 HOH HOH . 
G 5 HOH B 41 241 106 HOH HOH . 
G 5 HOH B 42 242 64 HOH HOH . 
G 5 HOH B 43 243 83 HOH HOH . 
G 5 HOH B 44 244 136 HOH HOH . 
G 5 HOH B 45 245 110 HOH HOH . 
G 5 HOH B 46 246 45 HOH HOH . 
G 5 HOH B 47 247 79 HOH HOH . 
G 5 HOH B 48 248 105 HOH HOH . 
G 5 HOH B 49 249 95 HOH HOH . 
G 5 HOH B 50 250 31 HOH HOH . 
G 5 HOH B 51 251 93 HOH HOH . 
G 5 HOH B 52 252 94 HOH HOH . 
G 5 HOH B 53 253 56 HOH HOH . 
G 5 HOH B 54 254 104 HOH HOH . 
G 5 HOH B 55 255 109 HOH HOH . 
G 5 HOH B 56 256 138 HOH HOH . 
G 5 HOH B 57 257 111 HOH HOH . 
G 5 HOH B 58 258 108 HOH HOH . 
G 5 HOH B 59 259 130 HOH HOH . 
G 5 HOH B 60 260 115 HOH HOH . 
G 5 HOH B 61 261 132 HOH HOH . 
H 5 HOH C 1 101 1 HOH HOH . 
H 5 HOH C 2 102 44 HOH HOH . 
H 5 HOH C 3 103 92 HOH HOH . 
H 5 HOH C 4 104 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 4 -30.79 -42.839 6.71 1 47.47 ? C1 NAG 202 A 1 
HETATM 2 C C2 NAG . . . E 4 -31.024 -43.679 5.458 1 53.5 ? C2 NAG 202 A 1 
HETATM 3 C C3 NAG . . . E 4 -32.184 -44.624 5.764 1 52.76 ? C3 NAG 202 A 1 
HETATM 4 C C4 NAG . . . E 4 -31.858 -45.49 6.974 1 56.01 ? C4 NAG 202 A 1 
HETATM 5 C C5 NAG . . . E 4 -31.471 -44.612 8.161 1 61.31 ? C5 NAG 202 A 1 
HETATM 6 C C6 NAG . . . E 4 -30.957 -45.404 9.341 1 64.43 ? C6 NAG 202 A 1 
HETATM 7 C C7 NAG . . . E 4 -30.618 -42.782 3.208 1 34.69 ? C7 NAG 202 A 1 
HETATM 8 C C8 NAG . . . E 4 -31.168 -41.939 2.096 1 26.66 ? C8 NAG 202 A 1 
HETATM 9 N N2 NAG . . . E 4 -31.347 -42.822 4.328 1 48.06 ? N2 NAG 202 A 1 
HETATM 10 O O3 NAG . . . E 4 -32.439 -45.447 4.632 1 52.13 ? O3 NAG 202 A 1 
HETATM 11 O O4 NAG . . . E 4 -32.988 -46.281 7.325 1 58.44 ? O4 NAG 202 A 1 
HETATM 12 O O5 NAG . . . E 4 -30.421 -43.712 7.776 1 56.42 ? O5 NAG 202 A 1 
HETATM 13 O O6 NAG . . . E 4 -30.551 -44.551 10.403 1 70.03 ? O6 NAG 202 A 1 
HETATM 14 O O7 NAG . . . E 4 -29.563 -43.398 3.096 1 42.47 ? O7 NAG 202 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#