data_6BJ5 # _model_server_result.job_id TZ3nBREBFxlUy9RLx5adVQ _model_server_result.datetime_utc '2024-11-23 06:03:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6BJ5 # _exptl.entry_id 6BJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.88 _cell.angle_gamma 90 _cell.entry_id 6BJ5 _cell.length_a 99.012 _cell.length_b 122.066 _cell.length_c 130.095 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,K,L 1 1 C,D,I,M,N 2 1 E,F,H,J,O,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 D 1 NAG B 402 NAG 3 n G NAG 2 D 2 NAG B 401 NAG 3 n H NAG 1 E 1 NAG C 403 NAG 3 n H NAG 2 E 2 NAG C 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C ND2 ASN 28 A ASN 28 1_555 I C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 G O4 NAG . D NAG 1 1_555 G C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 H O4 NAG . E NAG 1 1_555 H C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6BJ5 _atom_sites.fract_transf_matrix[1][1] 0.0101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000861 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 NAG A 1 401 401 NAG NAG . J 5 P15 C 1 401 401 P15 PE4 . K 6 HOH B 1 501 501 HOH HOH . K 6 HOH B 2 502 502 HOH HOH . K 6 HOH B 3 503 503 HOH HOH . K 6 HOH B 4 504 504 HOH HOH . K 6 HOH B 5 505 505 HOH HOH . K 6 HOH B 6 506 506 HOH HOH . K 6 HOH B 7 507 507 HOH HOH . K 6 HOH B 8 508 508 HOH HOH . K 6 HOH B 9 509 509 HOH HOH . K 6 HOH B 10 510 510 HOH HOH . K 6 HOH B 11 511 511 HOH HOH . K 6 HOH B 12 512 512 HOH HOH . K 6 HOH B 13 513 513 HOH HOH . K 6 HOH B 14 514 514 HOH HOH . L 6 HOH F 1 401 401 HOH HOH . M 6 HOH A 1 501 501 HOH HOH . M 6 HOH A 2 502 502 HOH HOH . M 6 HOH A 3 503 503 HOH HOH . M 6 HOH A 4 504 504 HOH HOH . M 6 HOH A 5 505 505 HOH HOH . M 6 HOH A 6 506 506 HOH HOH . M 6 HOH A 7 507 507 HOH HOH . M 6 HOH A 8 508 508 HOH HOH . M 6 HOH A 9 509 509 HOH HOH . M 6 HOH A 10 510 510 HOH HOH . M 6 HOH A 11 511 511 HOH HOH . M 6 HOH A 12 512 512 HOH HOH . M 6 HOH A 13 513 513 HOH HOH . M 6 HOH A 14 514 514 HOH HOH . M 6 HOH A 15 515 515 HOH HOH . M 6 HOH A 16 516 516 HOH HOH . N 6 HOH G 1 501 501 HOH HOH . N 6 HOH G 2 502 502 HOH HOH . N 6 HOH G 3 503 503 HOH HOH . N 6 HOH G 4 504 504 HOH HOH . N 6 HOH G 5 505 505 HOH HOH . N 6 HOH G 6 506 506 HOH HOH . N 6 HOH G 7 507 507 HOH HOH . O 6 HOH C 1 501 501 HOH HOH . O 6 HOH C 2 502 502 HOH HOH . O 6 HOH C 3 503 503 HOH HOH . O 6 HOH C 4 504 504 HOH HOH . O 6 HOH C 5 505 505 HOH HOH . O 6 HOH C 6 506 506 HOH HOH . O 6 HOH C 7 507 507 HOH HOH . O 6 HOH C 8 508 508 HOH HOH . O 6 HOH C 9 509 509 HOH HOH . O 6 HOH C 10 510 510 HOH HOH . O 6 HOH C 11 511 511 HOH HOH . O 6 HOH C 12 512 512 HOH HOH . O 6 HOH C 13 513 513 HOH HOH . O 6 HOH C 14 514 514 HOH HOH . O 6 HOH C 15 515 515 HOH HOH . O 6 HOH C 16 516 516 HOH HOH . O 6 HOH C 17 517 517 HOH HOH . O 6 HOH C 18 518 518 HOH HOH . P 6 HOH H 1 401 401 HOH HOH . P 6 HOH H 2 402 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 4 -64.198 35.008 41.273 1 70.15 ? C1 NAG 401 A 1 HETATM 2 C C2 NAG . . . I 4 -64.204 34.906 42.822 1 74.21 ? C2 NAG 401 A 1 HETATM 3 C C3 NAG . . . I 4 -65.639 34.846 43.372 1 77.01 ? C3 NAG 401 A 1 HETATM 4 C C4 NAG . . . I 4 -66.496 35.97 42.811 1 76.48 ? C4 NAG 401 A 1 HETATM 5 C C5 NAG . . . I 4 -66.472 35.895 41.292 1 76 ? C5 NAG 401 A 1 HETATM 6 C C6 NAG . . . I 4 -67.274 36.994 40.635 1 71.13 ? C6 NAG 401 A 1 HETATM 7 C C7 NAG . . . I 4 -62.469 33.783 44.141 1 71.68 ? C7 NAG 401 A 1 HETATM 8 C C8 NAG . . . I 4 -61.819 32.472 44.473 1 69.78 ? C8 NAG 401 A 1 HETATM 9 N N2 NAG . . . I 4 -63.462 33.734 43.253 1 72.86 ? N2 NAG 401 A 1 HETATM 10 O O3 NAG . . . I 4 -65.618 34.928 44.794 1 77.07 ? O3 NAG 401 A 1 HETATM 11 O O4 NAG . . . I 4 -67.834 35.874 43.293 1 73 ? O4 NAG 401 A 1 HETATM 12 O O5 NAG . . . I 4 -65.117 36.046 40.844 1 78.41 ? O5 NAG 401 A 1 HETATM 13 O O6 NAG . . . I 4 -66.784 37.286 39.335 1 66.33 ? O6 NAG 401 A 1 HETATM 14 O O7 NAG . . . I 4 -62.106 34.839 44.649 1 73.48 ? O7 NAG 401 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 616 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #