data_6BJ5 # _model_server_result.job_id DMRMjS-zPr3KEhgjtXW_aA _model_server_result.datetime_utc '2024-12-08 16:39:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 6BJ5 # _exptl.entry_id 6BJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.357 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.88 _cell.angle_gamma 90 _cell.entry_id 6BJ5 _cell.length_a 99.012 _cell.length_b 122.066 _cell.length_c 130.095 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,K,L 1 1 C,D,I,M,N 2 1 E,F,H,J,O,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 D 1 NAG B 402 NAG 3 n G NAG 2 D 2 NAG B 401 NAG 3 n H NAG 1 E 1 NAG C 403 NAG 3 n H NAG 2 E 2 NAG C 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C ND2 ASN 28 A ASN 28 1_555 I C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale2 G O4 NAG . D NAG 1 1_555 G C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 H O4 NAG . E NAG 1 1_555 H C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C13 H28 O7' _chem_comp.formula_weight 296.357 _chem_comp.id P15 _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 O6 P15 sing 267 n n C13 H131 P15 sing 268 n n C13 H132 P15 sing 269 n n C13 H133 P15 sing 270 n n O6 C12 P15 sing 271 n n C12 C11 P15 sing 272 n n C12 H121 P15 sing 273 n n C12 H122 P15 sing 274 n n C11 O5 P15 sing 275 n n C11 H111 P15 sing 276 n n C11 H112 P15 sing 277 n n O5 C10 P15 sing 278 n n C10 C9 P15 sing 279 n n C10 H101 P15 sing 280 n n C10 H102 P15 sing 281 n n C9 O4 P15 sing 282 n n C9 H91 P15 sing 283 n n C9 H92 P15 sing 284 n n O4 C8 P15 sing 285 n n C8 C7 P15 sing 286 n n C8 H81 P15 sing 287 n n C8 H82 P15 sing 288 n n C7 O3 P15 sing 289 n n C7 H71 P15 sing 290 n n C7 H72 P15 sing 291 n n O3 C6 P15 sing 292 n n C6 C5 P15 sing 293 n n C6 H61 P15 sing 294 n n C6 H62 P15 sing 295 n n C5 O2 P15 sing 296 n n C5 H51 P15 sing 297 n n C5 H52 P15 sing 298 n n O2 C4 P15 sing 299 n n C4 C3 P15 sing 300 n n C4 H41 P15 sing 301 n n C4 H42 P15 sing 302 n n C3 O1 P15 sing 303 n n C3 H31 P15 sing 304 n n C3 H32 P15 sing 305 n n O1 C2 P15 sing 306 n n C2 C1 P15 sing 307 n n C2 H21 P15 sing 308 n n C2 H22 P15 sing 309 n n C1 OXT P15 sing 310 n n C1 H11 P15 sing 311 n n C1 H12 P15 sing 312 n n OXT HOXT P15 sing 313 n n # _atom_sites.entry_id 6BJ5 _atom_sites.fract_transf_matrix[1][1] 0.0101 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000861 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 NAG A 1 401 401 NAG NAG . J 5 P15 C 1 401 401 P15 PE4 . K 6 HOH B 1 501 501 HOH HOH . K 6 HOH B 2 502 502 HOH HOH . K 6 HOH B 3 503 503 HOH HOH . K 6 HOH B 4 504 504 HOH HOH . K 6 HOH B 5 505 505 HOH HOH . K 6 HOH B 6 506 506 HOH HOH . K 6 HOH B 7 507 507 HOH HOH . K 6 HOH B 8 508 508 HOH HOH . K 6 HOH B 9 509 509 HOH HOH . K 6 HOH B 10 510 510 HOH HOH . K 6 HOH B 11 511 511 HOH HOH . K 6 HOH B 12 512 512 HOH HOH . K 6 HOH B 13 513 513 HOH HOH . K 6 HOH B 14 514 514 HOH HOH . L 6 HOH F 1 401 401 HOH HOH . M 6 HOH A 1 501 501 HOH HOH . M 6 HOH A 2 502 502 HOH HOH . M 6 HOH A 3 503 503 HOH HOH . M 6 HOH A 4 504 504 HOH HOH . M 6 HOH A 5 505 505 HOH HOH . M 6 HOH A 6 506 506 HOH HOH . M 6 HOH A 7 507 507 HOH HOH . M 6 HOH A 8 508 508 HOH HOH . M 6 HOH A 9 509 509 HOH HOH . M 6 HOH A 10 510 510 HOH HOH . M 6 HOH A 11 511 511 HOH HOH . M 6 HOH A 12 512 512 HOH HOH . M 6 HOH A 13 513 513 HOH HOH . M 6 HOH A 14 514 514 HOH HOH . M 6 HOH A 15 515 515 HOH HOH . M 6 HOH A 16 516 516 HOH HOH . N 6 HOH G 1 501 501 HOH HOH . N 6 HOH G 2 502 502 HOH HOH . N 6 HOH G 3 503 503 HOH HOH . N 6 HOH G 4 504 504 HOH HOH . N 6 HOH G 5 505 505 HOH HOH . N 6 HOH G 6 506 506 HOH HOH . N 6 HOH G 7 507 507 HOH HOH . O 6 HOH C 1 501 501 HOH HOH . O 6 HOH C 2 502 502 HOH HOH . O 6 HOH C 3 503 503 HOH HOH . O 6 HOH C 4 504 504 HOH HOH . O 6 HOH C 5 505 505 HOH HOH . O 6 HOH C 6 506 506 HOH HOH . O 6 HOH C 7 507 507 HOH HOH . O 6 HOH C 8 508 508 HOH HOH . O 6 HOH C 9 509 509 HOH HOH . O 6 HOH C 10 510 510 HOH HOH . O 6 HOH C 11 511 511 HOH HOH . O 6 HOH C 12 512 512 HOH HOH . O 6 HOH C 13 513 513 HOH HOH . O 6 HOH C 14 514 514 HOH HOH . O 6 HOH C 15 515 515 HOH HOH . O 6 HOH C 16 516 516 HOH HOH . O 6 HOH C 17 517 517 HOH HOH . O 6 HOH C 18 518 518 HOH HOH . P 6 HOH H 1 401 401 HOH HOH . P 6 HOH H 2 402 402 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 P15 . . . J 5 -36.209 49.087 -3.34 1 46.25 ? C13 P15 401 C 1 HETATM 2 O O6 P15 . . . J 5 -35.459 47.903 -3.18 1 31.42 ? O6 P15 401 C 1 HETATM 3 C C12 P15 . . . J 5 -34.277 47.99 -4.146 1 34.41 ? C12 P15 401 C 1 HETATM 4 C C11 P15 . . . J 5 -34.033 46.746 -4.998 1 45.37 ? C11 P15 401 C 1 HETATM 5 O O5 P15 . . . J 5 -33.482 47.19 -6.215 1 50.82 ? O5 P15 401 C 1 HETATM 6 C C10 P15 . . . J 5 -33.066 46.227 -7.161 1 35.51 ? C10 P15 401 C 1 HETATM 7 C C9 P15 . . . J 5 -34.255 45.346 -7.535 1 37.07 ? C9 P15 401 C 1 HETATM 8 O O4 P15 . . . J 5 -33.846 44.39 -8.473 1 37.43 ? O4 P15 401 C 1 HETATM 9 C C8 P15 . . . J 5 -34.291 43.081 -8.234 1 27.15 ? C8 P15 401 C 1 HETATM 10 C C7 P15 . . . J 5 -33.076 42.168 -8.389 1 23.61 ? C7 P15 401 C 1 HETATM 11 O O3 P15 . . . J 5 -33.234 41.025 -7.611 1 28.43 ? O3 P15 401 C 1 HETATM 12 C C6 P15 . . . J 5 -32.067 40.28 -7.337 1 13.08 ? C6 P15 401 C 1 HETATM 13 C C5 P15 . . . J 5 -31.428 39.989 -8.681 1 17.48 ? C5 P15 401 C 1 HETATM 14 O O2 P15 . . . J 5 -30.691 38.808 -8.655 1 26.18 ? O2 P15 401 C 1 HETATM 15 C C4 P15 . . . J 5 -30.622 38.193 -9.915 1 27.46 ? C4 P15 401 C 1 HETATM 16 C C3 P15 . . . J 5 -31.539 36.975 -9.903 1 41.18 ? C3 P15 401 C 1 HETATM 17 O O1 P15 . . . J 5 -31.615 36.509 -11.217 1 46.28 ? O1 P15 401 C 1 HETATM 18 C C2 P15 . . . J 5 -31.651 35.116 -11.32 1 37.52 ? C2 P15 401 C 1 HETATM 19 C C1 P15 . . . J 5 -33.078 34.644 -11.058 1 28.01 ? C1 P15 401 C 1 HETATM 20 O OXT P15 . . . J 5 -33.041 33.259 -10.783 1 31.64 ? OXT P15 401 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #