data_6BJ7 # _model_server_result.job_id tH0vXhfFM8bzqK_5g_4veg _model_server_result.datetime_utc '2024-11-22 17:58:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6BJ7 # _exptl.entry_id 6BJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BJ7 _cell.length_a 99.97 _cell.length_b 99.97 _cell.length_c 99.97 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_456 z-1/2,-x+1/2,-y+1 0 0 1 -1 0 0 0 -1 0 -49.985 49.985 99.97 3 'crystal symmetry operation' 12_565 -y+1/2,-z+1,x+1/2 0 -1 0 0 0 -1 1 0 0 49.985 99.97 49.985 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 32 A ILE 32 1_555 A N CME 33 A CME 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CME 33 A CME 33 1_555 A N GLY 34 A GLY 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 104 n n S C1 DMS sing 105 n n S C2 DMS sing 106 n n C1 H11 DMS sing 107 n n C1 H12 DMS sing 108 n n C1 H13 DMS sing 109 n n C2 H21 DMS sing 110 n n C2 H22 DMS sing 111 n n C2 H23 DMS sing 112 n n # _atom_sites.entry_id 6BJ7 _atom_sites.fract_transf_matrix[1][1] 0.010003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 2 DMS DMS . D 2 DMS A 1 303 3 DMS DMS . E 2 DMS A 1 304 4 DMS DMS . F 2 DMS A 1 305 5 DMS DMS . G 3 DU7 A 1 306 1 DU7 FRG . H 4 HOH A 1 401 116 HOH HOH . H 4 HOH A 2 402 173 HOH HOH . H 4 HOH A 3 403 227 HOH HOH . H 4 HOH A 4 404 115 HOH HOH . H 4 HOH A 5 405 42 HOH HOH . H 4 HOH A 6 406 44 HOH HOH . H 4 HOH A 7 407 125 HOH HOH . H 4 HOH A 8 408 150 HOH HOH . H 4 HOH A 9 409 136 HOH HOH . H 4 HOH A 10 410 221 HOH HOH . H 4 HOH A 11 411 95 HOH HOH . H 4 HOH A 12 412 187 HOH HOH . H 4 HOH A 13 413 93 HOH HOH . H 4 HOH A 14 414 83 HOH HOH . H 4 HOH A 15 415 57 HOH HOH . H 4 HOH A 16 416 69 HOH HOH . H 4 HOH A 17 417 85 HOH HOH . H 4 HOH A 18 418 41 HOH HOH . H 4 HOH A 19 419 68 HOH HOH . H 4 HOH A 20 420 4 HOH HOH . H 4 HOH A 21 421 146 HOH HOH . H 4 HOH A 22 422 29 HOH HOH . H 4 HOH A 23 423 127 HOH HOH . H 4 HOH A 24 424 20 HOH HOH . H 4 HOH A 25 425 50 HOH HOH . H 4 HOH A 26 426 225 HOH HOH . H 4 HOH A 27 427 148 HOH HOH . H 4 HOH A 28 428 55 HOH HOH . H 4 HOH A 29 429 169 HOH HOH . H 4 HOH A 30 430 48 HOH HOH . H 4 HOH A 31 431 158 HOH HOH . H 4 HOH A 32 432 17 HOH HOH . H 4 HOH A 33 433 149 HOH HOH . H 4 HOH A 34 434 22 HOH HOH . H 4 HOH A 35 435 53 HOH HOH . H 4 HOH A 36 436 27 HOH HOH . H 4 HOH A 37 437 60 HOH HOH . H 4 HOH A 38 438 2 HOH HOH . H 4 HOH A 39 439 6 HOH HOH . H 4 HOH A 40 440 25 HOH HOH . H 4 HOH A 41 441 140 HOH HOH . H 4 HOH A 42 442 3 HOH HOH . H 4 HOH A 43 443 105 HOH HOH . H 4 HOH A 44 444 75 HOH HOH . H 4 HOH A 45 445 159 HOH HOH . H 4 HOH A 46 446 26 HOH HOH . H 4 HOH A 47 447 70 HOH HOH . H 4 HOH A 48 448 103 HOH HOH . H 4 HOH A 49 449 96 HOH HOH . H 4 HOH A 50 450 56 HOH HOH . H 4 HOH A 51 451 223 HOH HOH . H 4 HOH A 52 452 47 HOH HOH . H 4 HOH A 53 453 18 HOH HOH . H 4 HOH A 54 454 7 HOH HOH . H 4 HOH A 55 455 145 HOH HOH . H 4 HOH A 56 456 220 HOH HOH . H 4 HOH A 57 457 74 HOH HOH . H 4 HOH A 58 458 161 HOH HOH . H 4 HOH A 59 459 126 HOH HOH . H 4 HOH A 60 460 174 HOH HOH . H 4 HOH A 61 461 91 HOH HOH . H 4 HOH A 62 462 86 HOH HOH . H 4 HOH A 63 463 1 HOH HOH . H 4 HOH A 64 464 63 HOH HOH . H 4 HOH A 65 465 14 HOH HOH . H 4 HOH A 66 466 11 HOH HOH . H 4 HOH A 67 467 82 HOH HOH . H 4 HOH A 68 468 16 HOH HOH . H 4 HOH A 69 469 90 HOH HOH . H 4 HOH A 70 470 87 HOH HOH . H 4 HOH A 71 471 120 HOH HOH . H 4 HOH A 72 472 130 HOH HOH . H 4 HOH A 73 473 84 HOH HOH . H 4 HOH A 74 474 66 HOH HOH . H 4 HOH A 75 475 8 HOH HOH . H 4 HOH A 76 476 228 HOH HOH . H 4 HOH A 77 477 9 HOH HOH . H 4 HOH A 78 478 28 HOH HOH . H 4 HOH A 79 479 45 HOH HOH . H 4 HOH A 80 480 76 HOH HOH . H 4 HOH A 81 481 46 HOH HOH . H 4 HOH A 82 482 94 HOH HOH . H 4 HOH A 83 483 154 HOH HOH . H 4 HOH A 84 484 36 HOH HOH . H 4 HOH A 85 485 19 HOH HOH . H 4 HOH A 86 486 101 HOH HOH . H 4 HOH A 87 487 34 HOH HOH . H 4 HOH A 88 488 40 HOH HOH . H 4 HOH A 89 489 58 HOH HOH . H 4 HOH A 90 490 61 HOH HOH . H 4 HOH A 91 491 5 HOH HOH . H 4 HOH A 92 492 54 HOH HOH . H 4 HOH A 93 493 13 HOH HOH . H 4 HOH A 94 494 118 HOH HOH . H 4 HOH A 95 495 31 HOH HOH . H 4 HOH A 96 496 38 HOH HOH . H 4 HOH A 97 497 52 HOH HOH . H 4 HOH A 98 498 133 HOH HOH . H 4 HOH A 99 499 65 HOH HOH . H 4 HOH A 100 500 24 HOH HOH . H 4 HOH A 101 501 123 HOH HOH . H 4 HOH A 102 502 222 HOH HOH . H 4 HOH A 103 503 23 HOH HOH . H 4 HOH A 104 504 89 HOH HOH . H 4 HOH A 105 505 144 HOH HOH . H 4 HOH A 106 506 10 HOH HOH . H 4 HOH A 107 507 88 HOH HOH . H 4 HOH A 108 508 21 HOH HOH . H 4 HOH A 109 509 49 HOH HOH . H 4 HOH A 110 510 37 HOH HOH . H 4 HOH A 111 511 155 HOH HOH . H 4 HOH A 112 512 64 HOH HOH . H 4 HOH A 113 513 259 HOH HOH . H 4 HOH A 114 514 170 HOH HOH . H 4 HOH A 115 515 72 HOH HOH . H 4 HOH A 116 516 12 HOH HOH . H 4 HOH A 117 517 240 HOH HOH . H 4 HOH A 118 518 239 HOH HOH . H 4 HOH A 119 519 246 HOH HOH . H 4 HOH A 120 520 99 HOH HOH . H 4 HOH A 121 521 110 HOH HOH . H 4 HOH A 122 522 30 HOH HOH . H 4 HOH A 123 523 77 HOH HOH . H 4 HOH A 124 524 35 HOH HOH . H 4 HOH A 125 525 71 HOH HOH . H 4 HOH A 126 526 78 HOH HOH . H 4 HOH A 127 527 79 HOH HOH . H 4 HOH A 128 528 98 HOH HOH . H 4 HOH A 129 529 15 HOH HOH . H 4 HOH A 130 530 39 HOH HOH . H 4 HOH A 131 531 250 HOH HOH . H 4 HOH A 132 532 81 HOH HOH . H 4 HOH A 133 533 97 HOH HOH . H 4 HOH A 134 534 192 HOH HOH . H 4 HOH A 135 535 109 HOH HOH . H 4 HOH A 136 536 134 HOH HOH . H 4 HOH A 137 537 241 HOH HOH . H 4 HOH A 138 538 185 HOH HOH . H 4 HOH A 139 539 261 HOH HOH . H 4 HOH A 140 540 171 HOH HOH . H 4 HOH A 141 541 122 HOH HOH . H 4 HOH A 142 542 138 HOH HOH . H 4 HOH A 143 543 177 HOH HOH . H 4 HOH A 144 544 160 HOH HOH . H 4 HOH A 145 545 100 HOH HOH . H 4 HOH A 146 546 128 HOH HOH . H 4 HOH A 147 547 248 HOH HOH . H 4 HOH A 148 548 260 HOH HOH . H 4 HOH A 149 549 113 HOH HOH . H 4 HOH A 150 550 33 HOH HOH . H 4 HOH A 151 551 131 HOH HOH . H 4 HOH A 152 552 102 HOH HOH . H 4 HOH A 153 553 106 HOH HOH . H 4 HOH A 154 554 32 HOH HOH . H 4 HOH A 155 555 124 HOH HOH . H 4 HOH A 156 556 258 HOH HOH . H 4 HOH A 157 557 117 HOH HOH . H 4 HOH A 158 558 139 HOH HOH . H 4 HOH A 159 559 167 HOH HOH . H 4 HOH A 160 560 104 HOH HOH . H 4 HOH A 161 561 114 HOH HOH . H 4 HOH A 162 562 121 HOH HOH . H 4 HOH A 163 563 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 2 2.856 21.201 53.219 1 281.77 ? S DMS 305 A 1 HETATM 2 O O DMS . . . F 2 2.249 20.871 51.897 1 284.54 ? O DMS 305 A 1 HETATM 3 C C1 DMS . . . F 2 3.922 19.835 53.747 1 284.09 ? C1 DMS 305 A 1 HETATM 4 C C2 DMS . . . F 2 4.097 22.503 52.998 1 284.74 ? C2 DMS 305 A 1 HETATM 5 H H11 DMS . . . F 2 4.635 19.632 52.991 1 340.9 ? H11 DMS 305 A 1 HETATM 6 H H12 DMS . . . F 2 3.332 18.973 53.917 1 340.9 ? H12 DMS 305 A 1 HETATM 7 H H13 DMS . . . F 2 4.422 20.103 54.641 1 340.9 ? H13 DMS 305 A 1 HETATM 8 H H21 DMS . . . F 2 4.802 22.198 52.27 1 341.68 ? H21 DMS 305 A 1 HETATM 9 H H22 DMS . . . F 2 4.592 22.679 53.917 1 341.68 ? H22 DMS 305 A 1 HETATM 10 H H23 DMS . . . F 2 3.621 23.393 52.677 1 341.68 ? H23 DMS 305 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #