data_6BJK # _model_server_result.job_id 7XqDoxqvN8Mc5Qoay1HaQw _model_server_result.datetime_utc '2024-11-05 04:55:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6BJK # _exptl.entry_id 6BJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BJK _cell.length_a 52.49 _cell.length_b 150.26 _cell.length_c 78.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.49 0 39.16 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6BJK _atom_sites.fract_transf_matrix[1][1] 0.019051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 3 HOH A 1 501 6 HOH HOH . C 3 HOH A 2 502 131 HOH HOH . C 3 HOH A 3 503 14 HOH HOH . C 3 HOH A 4 504 50 HOH HOH . C 3 HOH A 5 505 95 HOH HOH . C 3 HOH A 6 506 60 HOH HOH . C 3 HOH A 7 507 12 HOH HOH . C 3 HOH A 8 508 10 HOH HOH . C 3 HOH A 9 509 65 HOH HOH . C 3 HOH A 10 510 7 HOH HOH . C 3 HOH A 11 511 54 HOH HOH . C 3 HOH A 12 512 85 HOH HOH . C 3 HOH A 13 513 13 HOH HOH . C 3 HOH A 14 514 53 HOH HOH . C 3 HOH A 15 515 44 HOH HOH . C 3 HOH A 16 516 46 HOH HOH . C 3 HOH A 17 517 80 HOH HOH . C 3 HOH A 18 518 52 HOH HOH . C 3 HOH A 19 519 70 HOH HOH . C 3 HOH A 20 520 27 HOH HOH . C 3 HOH A 21 521 127 HOH HOH . C 3 HOH A 22 522 4 HOH HOH . C 3 HOH A 23 523 75 HOH HOH . C 3 HOH A 24 524 21 HOH HOH . C 3 HOH A 25 525 23 HOH HOH . C 3 HOH A 26 526 73 HOH HOH . C 3 HOH A 27 527 123 HOH HOH . C 3 HOH A 28 528 101 HOH HOH . C 3 HOH A 29 529 1 HOH HOH . C 3 HOH A 30 530 128 HOH HOH . C 3 HOH A 31 531 3 HOH HOH . C 3 HOH A 32 532 30 HOH HOH . C 3 HOH A 33 533 116 HOH HOH . C 3 HOH A 34 534 72 HOH HOH . C 3 HOH A 35 535 29 HOH HOH . C 3 HOH A 36 536 19 HOH HOH . C 3 HOH A 37 537 47 HOH HOH . C 3 HOH A 38 538 66 HOH HOH . C 3 HOH A 39 539 15 HOH HOH . C 3 HOH A 40 540 17 HOH HOH . C 3 HOH A 41 541 24 HOH HOH . C 3 HOH A 42 542 140 HOH HOH . C 3 HOH A 43 543 81 HOH HOH . C 3 HOH A 44 544 74 HOH HOH . C 3 HOH A 45 545 113 HOH HOH . C 3 HOH A 46 546 67 HOH HOH . C 3 HOH A 47 547 39 HOH HOH . C 3 HOH A 48 548 100 HOH HOH . C 3 HOH A 49 549 26 HOH HOH . C 3 HOH A 50 550 122 HOH HOH . C 3 HOH A 51 551 87 HOH HOH . C 3 HOH A 52 552 25 HOH HOH . C 3 HOH A 53 553 31 HOH HOH . C 3 HOH A 54 554 45 HOH HOH . C 3 HOH A 55 555 43 HOH HOH . C 3 HOH A 56 556 91 HOH HOH . C 3 HOH A 57 557 5 HOH HOH . C 3 HOH A 58 558 20 HOH HOH . C 3 HOH A 59 559 9 HOH HOH . C 3 HOH A 60 560 40 HOH HOH . C 3 HOH A 61 561 2 HOH HOH . C 3 HOH A 62 562 28 HOH HOH . C 3 HOH A 63 563 22 HOH HOH . C 3 HOH A 64 564 16 HOH HOH . C 3 HOH A 65 565 82 HOH HOH . C 3 HOH A 66 566 77 HOH HOH . C 3 HOH A 67 567 11 HOH HOH . C 3 HOH A 68 568 92 HOH HOH . C 3 HOH A 69 569 34 HOH HOH . C 3 HOH A 70 570 48 HOH HOH . C 3 HOH A 71 571 8 HOH HOH . C 3 HOH A 72 572 125 HOH HOH . C 3 HOH A 73 573 57 HOH HOH . C 3 HOH A 74 574 61 HOH HOH . C 3 HOH A 75 575 120 HOH HOH . C 3 HOH A 76 576 59 HOH HOH . C 3 HOH A 77 577 86 HOH HOH . C 3 HOH A 78 578 69 HOH HOH . C 3 HOH A 79 579 78 HOH HOH . C 3 HOH A 80 580 35 HOH HOH . C 3 HOH A 81 581 62 HOH HOH . C 3 HOH A 82 582 114 HOH HOH . C 3 HOH A 83 583 36 HOH HOH . C 3 HOH A 84 584 32 HOH HOH . C 3 HOH A 85 585 117 HOH HOH . C 3 HOH A 86 586 76 HOH HOH . C 3 HOH A 87 587 68 HOH HOH . C 3 HOH A 88 588 103 HOH HOH . C 3 HOH A 89 589 110 HOH HOH . C 3 HOH A 90 590 107 HOH HOH . C 3 HOH A 91 591 179 HOH HOH . C 3 HOH A 92 592 18 HOH HOH . C 3 HOH A 93 593 56 HOH HOH . C 3 HOH A 94 594 145 HOH HOH . C 3 HOH A 95 595 63 HOH HOH . C 3 HOH A 96 596 121 HOH HOH . C 3 HOH A 97 597 93 HOH HOH . C 3 HOH A 98 598 41 HOH HOH . C 3 HOH A 99 599 158 HOH HOH . C 3 HOH A 100 600 102 HOH HOH . C 3 HOH A 101 601 106 HOH HOH . C 3 HOH A 102 602 89 HOH HOH . C 3 HOH A 103 603 148 HOH HOH . C 3 HOH A 104 604 104 HOH HOH . C 3 HOH A 105 605 96 HOH HOH . C 3 HOH A 106 606 84 HOH HOH . C 3 HOH A 107 607 55 HOH HOH . C 3 HOH A 108 608 83 HOH HOH . C 3 HOH A 109 609 134 HOH HOH . C 3 HOH A 110 610 160 HOH HOH . C 3 HOH A 111 611 64 HOH HOH . C 3 HOH A 112 612 146 HOH HOH . C 3 HOH A 113 613 142 HOH HOH . C 3 HOH A 114 614 109 HOH HOH . C 3 HOH A 115 615 42 HOH HOH . C 3 HOH A 116 616 126 HOH HOH . C 3 HOH A 117 617 33 HOH HOH . C 3 HOH A 118 618 144 HOH HOH . C 3 HOH A 119 619 180 HOH HOH . C 3 HOH A 120 620 185 HOH HOH . C 3 HOH A 121 621 184 HOH HOH . C 3 HOH A 122 622 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 10.354 21.464 -4.763 1 50.12 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 9.485 22.578 -4.56 1 46.6 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 10.484 21.14 -6.241 1 50.68 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 10.773 22.349 -6.953 1 53 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 11.584 20.088 -6.458 1 50.86 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 11.22 18.793 -5.925 1 48.24 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #