data_6BJO # _model_server_result.job_id oIQOd0xGh7wleCDq65NyAQ _model_server_result.datetime_utc '2024-11-05 09:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6BJO # _exptl.entry_id 6BJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 606.548 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-({4-(4-bromophenyl)-1-[1-(tert-butoxycarbonyl)-L-prolyl]piperidine-4-carbonyl}amino)(cyclopentyl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BJO _cell.length_a 54.011 _cell.length_b 54.011 _cell.length_c 77.873 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 44 1_555 B SG CYS 62 B CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? disulf ? disulf2 A SG CYS 62 A CYS 46 1_555 B SG CYS 60 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? # _chem_comp.formula 'C29 H40 Br N3 O6' _chem_comp.formula_weight 606.548 _chem_comp.id DUY _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-({4-(4-bromophenyl)-1-[1-(tert-butoxycarbonyl)-L-prolyl]piperidine-4-carbonyl}amino)(cyclopentyl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BJO _atom_sites.fract_transf_matrix[1][1] 0.018515 _atom_sites.fract_transf_matrix[1][2] 0.010689 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DUY A 1 201 2 DUY DM2 . D 2 DUY B 1 201 1 DUY DM2 . E 3 HOH A 1 301 103 HOH HOH . E 3 HOH A 2 302 113 HOH HOH . E 3 HOH A 3 303 106 HOH HOH . E 3 HOH A 4 304 59 HOH HOH . E 3 HOH A 5 305 100 HOH HOH . E 3 HOH A 6 306 40 HOH HOH . E 3 HOH A 7 307 80 HOH HOH . E 3 HOH A 8 308 148 HOH HOH . E 3 HOH A 9 309 114 HOH HOH . E 3 HOH A 10 310 29 HOH HOH . E 3 HOH A 11 311 85 HOH HOH . E 3 HOH A 12 312 97 HOH HOH . E 3 HOH A 13 313 124 HOH HOH . E 3 HOH A 14 314 74 HOH HOH . E 3 HOH A 15 315 16 HOH HOH . E 3 HOH A 16 316 47 HOH HOH . E 3 HOH A 17 317 58 HOH HOH . E 3 HOH A 18 318 93 HOH HOH . E 3 HOH A 19 319 14 HOH HOH . E 3 HOH A 20 320 82 HOH HOH . E 3 HOH A 21 321 70 HOH HOH . E 3 HOH A 22 322 53 HOH HOH . E 3 HOH A 23 323 95 HOH HOH . E 3 HOH A 24 324 52 HOH HOH . E 3 HOH A 25 325 83 HOH HOH . E 3 HOH A 26 326 135 HOH HOH . E 3 HOH A 27 327 132 HOH HOH . E 3 HOH A 28 328 35 HOH HOH . E 3 HOH A 29 329 79 HOH HOH . E 3 HOH A 30 330 10 HOH HOH . E 3 HOH A 31 331 141 HOH HOH . E 3 HOH A 32 332 158 HOH HOH . E 3 HOH A 33 333 69 HOH HOH . E 3 HOH A 34 334 55 HOH HOH . E 3 HOH A 35 335 131 HOH HOH . E 3 HOH A 36 336 92 HOH HOH . E 3 HOH A 37 337 108 HOH HOH . E 3 HOH A 38 338 81 HOH HOH . E 3 HOH A 39 339 6 HOH HOH . E 3 HOH A 40 340 44 HOH HOH . E 3 HOH A 41 341 99 HOH HOH . E 3 HOH A 42 342 116 HOH HOH . E 3 HOH A 43 343 149 HOH HOH . E 3 HOH A 44 344 118 HOH HOH . E 3 HOH A 45 345 42 HOH HOH . E 3 HOH A 46 346 157 HOH HOH . E 3 HOH A 47 347 104 HOH HOH . E 3 HOH A 48 348 101 HOH HOH . E 3 HOH A 49 349 71 HOH HOH . E 3 HOH A 50 350 75 HOH HOH . E 3 HOH A 51 351 151 HOH HOH . E 3 HOH A 52 352 84 HOH HOH . E 3 HOH A 53 353 143 HOH HOH . E 3 HOH A 54 354 68 HOH HOH . E 3 HOH A 55 355 76 HOH HOH . E 3 HOH A 56 356 88 HOH HOH . E 3 HOH A 57 357 64 HOH HOH . E 3 HOH A 58 358 123 HOH HOH . E 3 HOH A 59 359 134 HOH HOH . E 3 HOH A 60 360 121 HOH HOH . E 3 HOH A 61 361 119 HOH HOH . E 3 HOH A 62 362 160 HOH HOH . E 3 HOH A 63 363 137 HOH HOH . E 3 HOH A 64 364 153 HOH HOH . E 3 HOH A 65 365 54 HOH HOH . E 3 HOH A 66 366 18 HOH HOH . E 3 HOH A 67 367 65 HOH HOH . E 3 HOH A 68 368 147 HOH HOH . E 3 HOH A 69 369 26 HOH HOH . E 3 HOH A 70 370 167 HOH HOH . E 3 HOH A 71 371 77 HOH HOH . E 3 HOH A 72 372 73 HOH HOH . E 3 HOH A 73 373 21 HOH HOH . F 3 HOH B 1 301 2 HOH HOH . F 3 HOH B 2 302 9 HOH HOH . F 3 HOH B 3 303 36 HOH HOH . F 3 HOH B 4 304 94 HOH HOH . F 3 HOH B 5 305 129 HOH HOH . F 3 HOH B 6 306 96 HOH HOH . F 3 HOH B 7 307 90 HOH HOH . F 3 HOH B 8 308 37 HOH HOH . F 3 HOH B 9 309 1 HOH HOH . F 3 HOH B 10 310 112 HOH HOH . F 3 HOH B 11 311 130 HOH HOH . F 3 HOH B 12 312 133 HOH HOH . F 3 HOH B 13 313 13 HOH HOH . F 3 HOH B 14 314 115 HOH HOH . F 3 HOH B 15 315 165 HOH HOH . F 3 HOH B 16 316 38 HOH HOH . F 3 HOH B 17 317 91 HOH HOH . F 3 HOH B 18 318 56 HOH HOH . F 3 HOH B 19 319 128 HOH HOH . F 3 HOH B 20 320 139 HOH HOH . F 3 HOH B 21 321 22 HOH HOH . F 3 HOH B 22 322 127 HOH HOH . F 3 HOH B 23 323 107 HOH HOH . F 3 HOH B 24 324 105 HOH HOH . F 3 HOH B 25 325 4 HOH HOH . F 3 HOH B 26 326 62 HOH HOH . F 3 HOH B 27 327 87 HOH HOH . F 3 HOH B 28 328 41 HOH HOH . F 3 HOH B 29 329 102 HOH HOH . F 3 HOH B 30 330 98 HOH HOH . F 3 HOH B 31 331 28 HOH HOH . F 3 HOH B 32 332 8 HOH HOH . F 3 HOH B 33 333 126 HOH HOH . F 3 HOH B 34 334 142 HOH HOH . F 3 HOH B 35 335 61 HOH HOH . F 3 HOH B 36 336 51 HOH HOH . F 3 HOH B 37 337 39 HOH HOH . F 3 HOH B 38 338 57 HOH HOH . F 3 HOH B 39 339 3 HOH HOH . F 3 HOH B 40 340 111 HOH HOH . F 3 HOH B 41 341 154 HOH HOH . F 3 HOH B 42 342 49 HOH HOH . F 3 HOH B 43 343 25 HOH HOH . F 3 HOH B 44 344 136 HOH HOH . F 3 HOH B 45 345 48 HOH HOH . F 3 HOH B 46 346 162 HOH HOH . F 3 HOH B 47 347 117 HOH HOH . F 3 HOH B 48 348 43 HOH HOH . F 3 HOH B 49 349 50 HOH HOH . F 3 HOH B 50 350 24 HOH HOH . F 3 HOH B 51 351 30 HOH HOH . F 3 HOH B 52 352 27 HOH HOH . F 3 HOH B 53 353 159 HOH HOH . F 3 HOH B 54 354 33 HOH HOH . F 3 HOH B 55 355 122 HOH HOH . F 3 HOH B 56 356 23 HOH HOH . F 3 HOH B 57 357 7 HOH HOH . F 3 HOH B 58 358 46 HOH HOH . F 3 HOH B 59 359 11 HOH HOH . F 3 HOH B 60 360 20 HOH HOH . F 3 HOH B 61 361 140 HOH HOH . F 3 HOH B 62 362 152 HOH HOH . F 3 HOH B 63 363 19 HOH HOH . F 3 HOH B 64 364 164 HOH HOH . F 3 HOH B 65 365 155 HOH HOH . F 3 HOH B 66 366 31 HOH HOH . F 3 HOH B 67 367 125 HOH HOH . F 3 HOH B 68 368 63 HOH HOH . F 3 HOH B 69 369 15 HOH HOH . F 3 HOH B 70 370 67 HOH HOH . F 3 HOH B 71 371 163 HOH HOH . F 3 HOH B 72 372 110 HOH HOH . F 3 HOH B 73 373 45 HOH HOH . F 3 HOH B 74 374 12 HOH HOH . F 3 HOH B 75 375 145 HOH HOH . F 3 HOH B 76 376 17 HOH HOH . F 3 HOH B 77 377 32 HOH HOH . F 3 HOH B 78 378 109 HOH HOH . F 3 HOH B 79 379 144 HOH HOH . F 3 HOH B 80 380 78 HOH HOH . F 3 HOH B 81 381 66 HOH HOH . F 3 HOH B 82 382 138 HOH HOH . F 3 HOH B 83 383 72 HOH HOH . F 3 HOH B 84 384 120 HOH HOH . F 3 HOH B 85 385 150 HOH HOH . F 3 HOH B 86 386 146 HOH HOH . F 3 HOH B 87 387 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DUY . . . C 2 -14.806 37.309 -8.753 1 29.46 ? C1 DUY 201 A 1 HETATM 2 C C2 DUY . . . C 2 -14.185 36.116 -9.52 1 30.19 ? C2 DUY 201 A 1 HETATM 3 C C3 DUY . . . C 2 -16.42 35.511 -10.53 1 34.81 ? C3 DUY 201 A 1 HETATM 4 O O4 DUY . . . C 2 -8.797 38.491 -4.333 1 31.37 ? O4 DUY 201 A 1 HETATM 5 C C5 DUY . . . C 2 -18.259 35.166 -7.407 1 40.64 ? C5 DUY 201 A 1 HETATM 6 C C6 DUY . . . C 2 -18.936 34.153 -9.449 1 36.72 ? C6 DUY 201 A 1 HETATM 7 O O6 DUY . . . C 2 -13.371 39.421 -3.749 1 29.92 ? O6 DUY 201 A 1 HETATM 8 C C7 DUY . . . C 2 -18.793 36.594 -9.37 1 37.22 ? C7 DUY 201 A 1 HETATM 9 C C8 DUY . . . C 2 -14.43 36.357 -11.816 1 28.74 ? C8 DUY 201 A 1 HETATM 10 C C9 DUY . . . C 2 -13.012 36.828 -11.52 1 36.38 ? C9 DUY 201 A 1 HETATM 11 C C10 DUY . . . C 2 -12.785 36.293 -10.107 1 31.92 ? C10 DUY 201 A 1 HETATM 12 C C15 DUY . . . C 2 -10.842 37.487 -3.585 1 29.05 ? C15 DUY 201 A 1 HETATM 13 C C16 DUY . . . C 2 -10.398 37.761 -2.15 1 26.83 ? C16 DUY 201 A 1 HETATM 14 C C17 DUY . . . C 2 -11.433 38.058 -1.012 1 31.45 ? C17 DUY 201 A 1 HETATM 15 C C18 DUY . . . C 2 -11.983 36.703 -0.567 1 31.04 ? C18 DUY 201 A 1 HETATM 16 C C19 DUY . . . C 2 -10.834 35.738 -0.835 1 30.18 ? C19 DUY 201 A 1 HETATM 17 C C20 DUY . . . C 2 -9.787 36.506 -1.643 1 30.04 ? C20 DUY 201 A 1 HETATM 18 C C21 DUY . . . C 2 -9.761 37.704 -4.588 1 30.21 ? C21 DUY 201 A 1 HETATM 19 O OH DUY . . . C 2 -15.534 38.17 -9.252 1 28.84 ? OH DUY 201 A 1 HETATM 20 N N DUY . . . C 2 -15.094 35.971 -10.617 1 30.08 ? N DUY 201 A 1 HETATM 21 O O DUY . . . C 2 -16.868 35.181 -9.273 1 34.82 ? O DUY 201 A 1 HETATM 22 C C DUY . . . C 2 -18.101 35.31 -8.919 1 37.1 ? C DUY 201 A 1 HETATM 23 O O3 DUY . . . C 2 -17.151 35.421 -11.504 1 38.09 ? O3 DUY 201 A 1 HETATM 24 N N2 DUY . . . C 2 -14.615 37.31 -7.363 1 28.7 ? N2 DUY 201 A 1 HETATM 25 C CE1 DUY . . . C 2 -14.96 38.498 -6.594 1 26.92 ? CE1 DUY 201 A 1 HETATM 26 C CD1 DUY . . . C 2 -15.464 38.164 -5.217 1 25.51 ? CD1 DUY 201 A 1 HETATM 27 C CG DUY . . . C 2 -14.496 37.291 -4.423 1 26.86 ? CG DUY 201 A 1 HETATM 28 C CB DUY . . . C 2 -13.371 38.242 -4.112 1 28.08 ? CB DUY 201 A 1 HETATM 29 N N3 DUY . . . C 2 -12.069 38.055 -3.889 1 29.8 ? N3 DUY 201 A 1 HETATM 30 O O5 DUY . . . C 2 -9.947 36.851 -5.475 1 32.7 ? O5 DUY 201 A 1 HETATM 31 C CD2 DUY . . . C 2 -15.022 36.89 -3.036 1 29.33 ? CD2 DUY 201 A 1 HETATM 32 C CE2 DUY . . . C 2 -15.283 35.553 -2.698 1 30.51 ? CE2 DUY 201 A 1 HETATM 33 C C24 DUY . . . C 2 -15.655 35.211 -1.418 1 36.65 ? C24 DUY 201 A 1 HETATM 34 C C25 DUY . . . C 2 -15.855 36.26 -0.519 1 38.18 ? C25 DUY 201 A 1 HETATM 35 BR BR1 DUY . . . C 2 -16.458 35.9 1.31 1 47.88 ? BR1 DUY 201 A 1 HETATM 36 C C26 DUY . . . C 2 -15.666 37.593 -0.774 1 36.91 ? C26 DUY 201 A 1 HETATM 37 C C27 DUY . . . C 2 -15.253 37.864 -2.081 1 32.92 ? C27 DUY 201 A 1 HETATM 38 C C28 DUY . . . C 2 -14.105 36.148 -5.431 1 27.75 ? C28 DUY 201 A 1 HETATM 39 C C29 DUY . . . C 2 -13.537 36.605 -6.792 1 30.12 ? C29 DUY 201 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #