data_6BJO # _model_server_result.job_id 7_3AMPTAeOqFDXBXQT-EYw _model_server_result.datetime_utc '2024-11-05 09:29:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6BJO # _exptl.entry_id 6BJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 606.548 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-({4-(4-bromophenyl)-1-[1-(tert-butoxycarbonyl)-L-prolyl]piperidine-4-carbonyl}amino)(cyclopentyl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BJO _cell.length_a 54.011 _cell.length_b 54.011 _cell.length_c 77.873 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 44 1_555 B SG CYS 62 B CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? disulf ? disulf2 A SG CYS 62 A CYS 46 1_555 B SG CYS 60 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? # _chem_comp.formula 'C29 H40 Br N3 O6' _chem_comp.formula_weight 606.548 _chem_comp.id DUY _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-({4-(4-bromophenyl)-1-[1-(tert-butoxycarbonyl)-L-prolyl]piperidine-4-carbonyl}amino)(cyclopentyl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BJO _atom_sites.fract_transf_matrix[1][1] 0.018515 _atom_sites.fract_transf_matrix[1][2] 0.010689 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DUY A 1 201 2 DUY DM2 . D 2 DUY B 1 201 1 DUY DM2 . E 3 HOH A 1 301 103 HOH HOH . E 3 HOH A 2 302 113 HOH HOH . E 3 HOH A 3 303 106 HOH HOH . E 3 HOH A 4 304 59 HOH HOH . E 3 HOH A 5 305 100 HOH HOH . E 3 HOH A 6 306 40 HOH HOH . E 3 HOH A 7 307 80 HOH HOH . E 3 HOH A 8 308 148 HOH HOH . E 3 HOH A 9 309 114 HOH HOH . E 3 HOH A 10 310 29 HOH HOH . E 3 HOH A 11 311 85 HOH HOH . E 3 HOH A 12 312 97 HOH HOH . E 3 HOH A 13 313 124 HOH HOH . E 3 HOH A 14 314 74 HOH HOH . E 3 HOH A 15 315 16 HOH HOH . E 3 HOH A 16 316 47 HOH HOH . E 3 HOH A 17 317 58 HOH HOH . E 3 HOH A 18 318 93 HOH HOH . E 3 HOH A 19 319 14 HOH HOH . E 3 HOH A 20 320 82 HOH HOH . E 3 HOH A 21 321 70 HOH HOH . E 3 HOH A 22 322 53 HOH HOH . E 3 HOH A 23 323 95 HOH HOH . E 3 HOH A 24 324 52 HOH HOH . E 3 HOH A 25 325 83 HOH HOH . E 3 HOH A 26 326 135 HOH HOH . E 3 HOH A 27 327 132 HOH HOH . E 3 HOH A 28 328 35 HOH HOH . E 3 HOH A 29 329 79 HOH HOH . E 3 HOH A 30 330 10 HOH HOH . E 3 HOH A 31 331 141 HOH HOH . E 3 HOH A 32 332 158 HOH HOH . E 3 HOH A 33 333 69 HOH HOH . E 3 HOH A 34 334 55 HOH HOH . E 3 HOH A 35 335 131 HOH HOH . E 3 HOH A 36 336 92 HOH HOH . E 3 HOH A 37 337 108 HOH HOH . E 3 HOH A 38 338 81 HOH HOH . E 3 HOH A 39 339 6 HOH HOH . E 3 HOH A 40 340 44 HOH HOH . E 3 HOH A 41 341 99 HOH HOH . E 3 HOH A 42 342 116 HOH HOH . E 3 HOH A 43 343 149 HOH HOH . E 3 HOH A 44 344 118 HOH HOH . E 3 HOH A 45 345 42 HOH HOH . E 3 HOH A 46 346 157 HOH HOH . E 3 HOH A 47 347 104 HOH HOH . E 3 HOH A 48 348 101 HOH HOH . E 3 HOH A 49 349 71 HOH HOH . E 3 HOH A 50 350 75 HOH HOH . E 3 HOH A 51 351 151 HOH HOH . E 3 HOH A 52 352 84 HOH HOH . E 3 HOH A 53 353 143 HOH HOH . E 3 HOH A 54 354 68 HOH HOH . E 3 HOH A 55 355 76 HOH HOH . E 3 HOH A 56 356 88 HOH HOH . E 3 HOH A 57 357 64 HOH HOH . E 3 HOH A 58 358 123 HOH HOH . E 3 HOH A 59 359 134 HOH HOH . E 3 HOH A 60 360 121 HOH HOH . E 3 HOH A 61 361 119 HOH HOH . E 3 HOH A 62 362 160 HOH HOH . E 3 HOH A 63 363 137 HOH HOH . E 3 HOH A 64 364 153 HOH HOH . E 3 HOH A 65 365 54 HOH HOH . E 3 HOH A 66 366 18 HOH HOH . E 3 HOH A 67 367 65 HOH HOH . E 3 HOH A 68 368 147 HOH HOH . E 3 HOH A 69 369 26 HOH HOH . E 3 HOH A 70 370 167 HOH HOH . E 3 HOH A 71 371 77 HOH HOH . E 3 HOH A 72 372 73 HOH HOH . E 3 HOH A 73 373 21 HOH HOH . F 3 HOH B 1 301 2 HOH HOH . F 3 HOH B 2 302 9 HOH HOH . F 3 HOH B 3 303 36 HOH HOH . F 3 HOH B 4 304 94 HOH HOH . F 3 HOH B 5 305 129 HOH HOH . F 3 HOH B 6 306 96 HOH HOH . F 3 HOH B 7 307 90 HOH HOH . F 3 HOH B 8 308 37 HOH HOH . F 3 HOH B 9 309 1 HOH HOH . F 3 HOH B 10 310 112 HOH HOH . F 3 HOH B 11 311 130 HOH HOH . F 3 HOH B 12 312 133 HOH HOH . F 3 HOH B 13 313 13 HOH HOH . F 3 HOH B 14 314 115 HOH HOH . F 3 HOH B 15 315 165 HOH HOH . F 3 HOH B 16 316 38 HOH HOH . F 3 HOH B 17 317 91 HOH HOH . F 3 HOH B 18 318 56 HOH HOH . F 3 HOH B 19 319 128 HOH HOH . F 3 HOH B 20 320 139 HOH HOH . F 3 HOH B 21 321 22 HOH HOH . F 3 HOH B 22 322 127 HOH HOH . F 3 HOH B 23 323 107 HOH HOH . F 3 HOH B 24 324 105 HOH HOH . F 3 HOH B 25 325 4 HOH HOH . F 3 HOH B 26 326 62 HOH HOH . F 3 HOH B 27 327 87 HOH HOH . F 3 HOH B 28 328 41 HOH HOH . F 3 HOH B 29 329 102 HOH HOH . F 3 HOH B 30 330 98 HOH HOH . F 3 HOH B 31 331 28 HOH HOH . F 3 HOH B 32 332 8 HOH HOH . F 3 HOH B 33 333 126 HOH HOH . F 3 HOH B 34 334 142 HOH HOH . F 3 HOH B 35 335 61 HOH HOH . F 3 HOH B 36 336 51 HOH HOH . F 3 HOH B 37 337 39 HOH HOH . F 3 HOH B 38 338 57 HOH HOH . F 3 HOH B 39 339 3 HOH HOH . F 3 HOH B 40 340 111 HOH HOH . F 3 HOH B 41 341 154 HOH HOH . F 3 HOH B 42 342 49 HOH HOH . F 3 HOH B 43 343 25 HOH HOH . F 3 HOH B 44 344 136 HOH HOH . F 3 HOH B 45 345 48 HOH HOH . F 3 HOH B 46 346 162 HOH HOH . F 3 HOH B 47 347 117 HOH HOH . F 3 HOH B 48 348 43 HOH HOH . F 3 HOH B 49 349 50 HOH HOH . F 3 HOH B 50 350 24 HOH HOH . F 3 HOH B 51 351 30 HOH HOH . F 3 HOH B 52 352 27 HOH HOH . F 3 HOH B 53 353 159 HOH HOH . F 3 HOH B 54 354 33 HOH HOH . F 3 HOH B 55 355 122 HOH HOH . F 3 HOH B 56 356 23 HOH HOH . F 3 HOH B 57 357 7 HOH HOH . F 3 HOH B 58 358 46 HOH HOH . F 3 HOH B 59 359 11 HOH HOH . F 3 HOH B 60 360 20 HOH HOH . F 3 HOH B 61 361 140 HOH HOH . F 3 HOH B 62 362 152 HOH HOH . F 3 HOH B 63 363 19 HOH HOH . F 3 HOH B 64 364 164 HOH HOH . F 3 HOH B 65 365 155 HOH HOH . F 3 HOH B 66 366 31 HOH HOH . F 3 HOH B 67 367 125 HOH HOH . F 3 HOH B 68 368 63 HOH HOH . F 3 HOH B 69 369 15 HOH HOH . F 3 HOH B 70 370 67 HOH HOH . F 3 HOH B 71 371 163 HOH HOH . F 3 HOH B 72 372 110 HOH HOH . F 3 HOH B 73 373 45 HOH HOH . F 3 HOH B 74 374 12 HOH HOH . F 3 HOH B 75 375 145 HOH HOH . F 3 HOH B 76 376 17 HOH HOH . F 3 HOH B 77 377 32 HOH HOH . F 3 HOH B 78 378 109 HOH HOH . F 3 HOH B 79 379 144 HOH HOH . F 3 HOH B 80 380 78 HOH HOH . F 3 HOH B 81 381 66 HOH HOH . F 3 HOH B 82 382 138 HOH HOH . F 3 HOH B 83 383 72 HOH HOH . F 3 HOH B 84 384 120 HOH HOH . F 3 HOH B 85 385 150 HOH HOH . F 3 HOH B 86 386 146 HOH HOH . F 3 HOH B 87 387 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DUY . . . D 2 -12.643 9.51 -8.775 1 35.23 ? C1 DUY 201 B 1 HETATM 2 C C2 DUY . . . D 2 -12.858 10.779 -9.602 1 34.1 ? C2 DUY 201 B 1 HETATM 3 C C3 DUY . . . D 2 -10.841 11.448 -10.821 1 39.4 ? C3 DUY 201 B 1 HETATM 4 O O4 DUY . . . D 2 -18.289 8.196 -4.364 1 28.09 ? O4 DUY 201 B 1 HETATM 5 C C5 DUY . . . D 2 -9.31 11.209 -7.758 1 43.66 ? C5 DUY 201 B 1 HETATM 6 C C6 DUY . . . D 2 -8.549 12.999 -9.295 1 44.3 ? C6 DUY 201 B 1 HETATM 7 O O6 DUY . . . D 2 -13.76 7.385 -3.982 1 31.73 ? O6 DUY 201 B 1 HETATM 8 C C7 DUY . . . D 2 -8.079 10.56 -9.644 1 50.76 ? C7 DUY 201 B 1 HETATM 9 C C8 DUY . . . D 2 -12.934 11.053 -11.986 1 41.77 ? C8 DUY 201 B 1 HETATM 10 C C9 DUY . . . D 2 -14.283 10.579 -11.467 1 43.78 ? C9 DUY 201 B 1 HETATM 11 C C10 DUY . . . D 2 -14.351 10.735 -9.939 1 34.08 ? C10 DUY 201 B 1 HETATM 12 C C15 DUY . . . D 2 -16.17 8.63 -3.5 1 25.49 ? C15 DUY 201 B 1 HETATM 13 C C16 DUY . . . D 2 -16.529 8.886 -2.021 1 26.16 ? C16 DUY 201 B 1 HETATM 14 C C17 DUY . . . D 2 -15.277 8.91 -1.122 1 28.28 ? C17 DUY 201 B 1 HETATM 15 C C18 DUY . . . D 2 -15.13 10.308 -0.592 1 25.54 ? C18 DUY 201 B 1 HETATM 16 C C19 DUY . . . D 2 -16.479 10.933 -0.768 1 26.64 ? C19 DUY 201 B 1 HETATM 17 C C20 DUY . . . D 2 -17.036 10.305 -1.962 1 24.98 ? C20 DUY 201 B 1 HETATM 18 C C21 DUY . . . D 2 -17.226 8.83 -4.539 1 26.84 ? C21 DUY 201 B 1 HETATM 19 O OH DUY . . . D 2 -11.938 8.687 -9.358 1 44.21 ? OH DUY 201 B 1 HETATM 20 N N DUY . . . D 2 -12.082 10.844 -10.852 1 42.57 ? N DUY 201 B 1 HETATM 21 O O DUY . . . D 2 -10.277 11.262 -9.615 1 43.31 ? O DUY 201 B 1 HETATM 22 C C DUY . . . D 2 -9.131 11.552 -9.189 1 43.85 ? C DUY 201 B 1 HETATM 23 O O3 DUY . . . D 2 -10.395 12.145 -11.715 1 57.57 ? O3 DUY 201 B 1 HETATM 24 N N2 DUY . . . D 2 -12.532 9.628 -7.394 1 31.95 ? N2 DUY 201 B 1 HETATM 25 C CE1 DUY . . . D 2 -12.154 8.438 -6.703 1 28.89 ? CE1 DUY 201 B 1 HETATM 26 C CD1 DUY . . . D 2 -11.562 8.554 -5.325 1 29.84 ? CD1 DUY 201 B 1 HETATM 27 C CG DUY . . . D 2 -12.458 9.442 -4.418 1 30.53 ? CG DUY 201 B 1 HETATM 28 C CB DUY . . . D 2 -13.753 8.614 -4.105 1 30.91 ? CB DUY 201 B 1 HETATM 29 N N3 DUY . . . D 2 -14.931 9.331 -3.86 1 25.25 ? N3 DUY 201 B 1 HETATM 30 O O5 DUY . . . D 2 -16.995 9.774 -5.375 1 25.54 ? O5 DUY 201 B 1 HETATM 31 C CD2 DUY . . . D 2 -11.909 9.814 -3.083 1 32.72 ? CD2 DUY 201 B 1 HETATM 32 C CE2 DUY . . . D 2 -12.063 11.114 -2.575 1 36.58 ? CE2 DUY 201 B 1 HETATM 33 C C24 DUY . . . D 2 -11.741 11.532 -1.305 1 35.61 ? C24 DUY 201 B 1 HETATM 34 C C25 DUY . . . D 2 -11.273 10.454 -0.592 1 33.22 ? C25 DUY 201 B 1 HETATM 35 BR BR1 DUY . . . D 2 -10.588 10.775 1.181 1 50.01 ? BR1 DUY 201 B 1 HETATM 36 C C26 DUY . . . D 2 -11.042 9.182 -1.012 1 35.1 ? C26 DUY 201 B 1 HETATM 37 C C27 DUY . . . D 2 -11.394 8.817 -2.294 1 36.19 ? C27 DUY 201 B 1 HETATM 38 C C28 DUY . . . D 2 -12.714 10.602 -5.316 1 30.04 ? C28 DUY 201 B 1 HETATM 39 C C29 DUY . . . D 2 -13.446 10.38 -6.591 1 31.06 ? C29 DUY 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #