data_6BJQ # _model_server_result.job_id K1MDa1hmfgCep4E0mk19jA _model_server_result.datetime_utc '2025-01-02 19:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bjq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6BJQ # _exptl.entry_id 6BJQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.139 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'beta-D-glucopyranuronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BJQ _cell.length_a 179.788 _cell.length_b 179.788 _cell.length_c 134.494 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BJQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 89.894 -155.700975 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.831333 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 89.894 -155.700975 -44.831333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H10 O7' _chem_comp.formula_weight 194.139 _chem_comp.id BDP _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-D-glucopyranuronic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-glucuronic acid;D-glucuronic acid;glucuronic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BDP sing 70 n n C1 O5 BDP sing 71 n n C1 O1 BDP sing 72 n n C1 H1 BDP sing 73 n n C2 C3 BDP sing 74 n n C2 O2 BDP sing 75 n n C2 H2 BDP sing 76 n n C3 C4 BDP sing 77 n n C3 O3 BDP sing 78 n n C3 H3 BDP sing 79 n n C4 C5 BDP sing 80 n n C4 O4 BDP sing 81 n n C4 H4 BDP sing 82 n n C5 C6 BDP sing 83 n n C5 O5 BDP sing 84 n n C5 H5 BDP sing 85 n n C6 O6A BDP doub 86 n n C6 O6B BDP sing 87 n n O2 HO2 BDP sing 88 n n O3 HO3 BDP sing 89 n n O4 HO4 BDP sing 90 n n O1 HO1 BDP sing 91 n n O6B HO6B BDP sing 92 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BDP DGlcpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BDP 'b-D-glucopyranuronic acid' 'COMMON NAME' GMML 1 BDP b-D-GlcpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BDP GlcA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6BJQ _atom_sites.fract_transf_matrix[1][1] 0.005562 _atom_sites.fract_transf_matrix[1][2] 0.003211 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDP A 1 701 67 BDP LIG . C 3 HOH A 1 801 19 HOH HOH . C 3 HOH A 2 802 65 HOH HOH . C 3 HOH A 3 803 12 HOH HOH . C 3 HOH A 4 804 23 HOH HOH . C 3 HOH A 5 805 5 HOH HOH . C 3 HOH A 6 806 33 HOH HOH . C 3 HOH A 7 807 30 HOH HOH . C 3 HOH A 8 808 35 HOH HOH . C 3 HOH A 9 809 42 HOH HOH . C 3 HOH A 10 810 49 HOH HOH . C 3 HOH A 11 811 55 HOH HOH . C 3 HOH A 12 812 3 HOH HOH . C 3 HOH A 13 813 47 HOH HOH . C 3 HOH A 14 814 1 HOH HOH . C 3 HOH A 15 815 14 HOH HOH . C 3 HOH A 16 816 48 HOH HOH . C 3 HOH A 17 817 8 HOH HOH . C 3 HOH A 18 818 37 HOH HOH . C 3 HOH A 19 819 26 HOH HOH . C 3 HOH A 20 820 39 HOH HOH . C 3 HOH A 21 821 9 HOH HOH . C 3 HOH A 22 822 31 HOH HOH . C 3 HOH A 23 823 7 HOH HOH . C 3 HOH A 24 824 66 HOH HOH . C 3 HOH A 25 825 36 HOH HOH . C 3 HOH A 26 826 43 HOH HOH . C 3 HOH A 27 827 4 HOH HOH . C 3 HOH A 28 828 32 HOH HOH . C 3 HOH A 29 829 16 HOH HOH . C 3 HOH A 30 830 25 HOH HOH . C 3 HOH A 31 831 10 HOH HOH . C 3 HOH A 32 832 22 HOH HOH . C 3 HOH A 33 833 34 HOH HOH . C 3 HOH A 34 834 52 HOH HOH . C 3 HOH A 35 835 64 HOH HOH . C 3 HOH A 36 836 53 HOH HOH . C 3 HOH A 37 837 20 HOH HOH . C 3 HOH A 38 838 59 HOH HOH . C 3 HOH A 39 839 11 HOH HOH . C 3 HOH A 40 840 2 HOH HOH . C 3 HOH A 41 841 21 HOH HOH . C 3 HOH A 42 842 13 HOH HOH . C 3 HOH A 43 843 18 HOH HOH . C 3 HOH A 44 844 27 HOH HOH . C 3 HOH A 45 845 24 HOH HOH . C 3 HOH A 46 846 50 HOH HOH . C 3 HOH A 47 847 58 HOH HOH . C 3 HOH A 48 848 57 HOH HOH . C 3 HOH A 49 849 63 HOH HOH . C 3 HOH A 50 850 61 HOH HOH . C 3 HOH A 51 851 45 HOH HOH . C 3 HOH A 52 852 29 HOH HOH . C 3 HOH A 53 853 6 HOH HOH . C 3 HOH A 54 854 46 HOH HOH . C 3 HOH A 55 855 40 HOH HOH . C 3 HOH A 56 856 28 HOH HOH . C 3 HOH A 57 857 41 HOH HOH . C 3 HOH A 58 858 51 HOH HOH . C 3 HOH A 59 859 17 HOH HOH . C 3 HOH A 60 860 44 HOH HOH . C 3 HOH A 61 861 15 HOH HOH . C 3 HOH A 62 862 38 HOH HOH . C 3 HOH A 63 863 60 HOH HOH . C 3 HOH A 64 864 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BDP . . . B 2 21.589 -80.556 -10.92 1 52.53 ? C1 BDP 701 A 1 HETATM 2 C C2 BDP . . . B 2 22.178 -81.019 -9.603 1 50.39 ? C2 BDP 701 A 1 HETATM 3 C C3 BDP . . . B 2 23.635 -81.085 -9.542 1 43.65 ? C3 BDP 701 A 1 HETATM 4 C C4 BDP . . . B 2 24.237 -81.626 -10.763 1 45.8 ? C4 BDP 701 A 1 HETATM 5 C C5 BDP . . . B 2 23.79 -80.852 -11.992 1 44.66 ? C5 BDP 701 A 1 HETATM 6 C C6 BDP . . . B 2 24.381 -81.226 -13.339 1 56.7 ? C6 BDP 701 A 1 HETATM 7 O O2 BDP . . . B 2 21.772 -80.124 -8.582 1 48.93 ? O2 BDP 701 A 1 HETATM 8 O O3 BDP . . . B 2 23.991 -81.873 -8.424 1 48.04 ? O3 BDP 701 A 1 HETATM 9 O O4 BDP . . . B 2 25.649 -81.59 -10.682 1 48.45 ? O4 BDP 701 A 1 HETATM 10 O O5 BDP . . . B 2 22.337 -80.874 -12.137 1 56.11 ? O5 BDP 701 A 1 HETATM 11 O O6A BDP . . . B 2 23.749 -82.038 -14.08 1 52.68 ? O6A BDP 701 A 1 HETATM 12 O O1 BDP . . . B 2 20.274 -81.017 -11.116 1 50.2 ? O1 BDP 701 A 1 HETATM 13 O O6B BDP . . . B 2 25.481 -80.715 -13.703 1 52.19 ? O6B BDP 701 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 465 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #