data_6BKE # _model_server_result.job_id chw17O41uS-QFKdGOlfdDA _model_server_result.datetime_utc '2024-11-18 03:32:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6BKE # _exptl.entry_id 6BKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 541.624 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(2-hydroxyethyl)-3-{5-[(5-methyl-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-2-yl)amino]-6-oxo-1,6-dihydropyridazin-3-yl}phenyl]-1-benzothiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BKE _cell.length_a 108.198 _cell.length_b 108.198 _cell.length_c 41.942 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 89 A GLY 480 1_555 A N OCS 90 A OCS 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C OCS 90 A OCS 481 1_555 A N LEU 91 A LEU 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C28 H27 N7 O3 S' _chem_comp.formula_weight 541.624 _chem_comp.id DVJ _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(2-hydroxyethyl)-3-{5-[(5-methyl-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-2-yl)amino]-6-oxo-1,6-dihydropyridazin-3-yl}phenyl]-1-benzothiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BKE _atom_sites.fract_transf_matrix[1][1] 0.009242 _atom_sites.fract_transf_matrix[1][2] 0.005336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 2 SO4 A 1 703 3 SO4 SO4 . E 3 DVJ A 1 704 1 DVJ DRG . F 4 HOH A 1 801 60 HOH HOH . F 4 HOH A 2 802 140 HOH HOH . F 4 HOH A 3 803 125 HOH HOH . F 4 HOH A 4 804 16 HOH HOH . F 4 HOH A 5 805 36 HOH HOH . F 4 HOH A 6 806 32 HOH HOH . F 4 HOH A 7 807 18 HOH HOH . F 4 HOH A 8 808 103 HOH HOH . F 4 HOH A 9 809 66 HOH HOH . F 4 HOH A 10 810 173 HOH HOH . F 4 HOH A 11 811 71 HOH HOH . F 4 HOH A 12 812 63 HOH HOH . F 4 HOH A 13 813 111 HOH HOH . F 4 HOH A 14 814 148 HOH HOH . F 4 HOH A 15 815 108 HOH HOH . F 4 HOH A 16 816 39 HOH HOH . F 4 HOH A 17 817 170 HOH HOH . F 4 HOH A 18 818 86 HOH HOH . F 4 HOH A 19 819 15 HOH HOH . F 4 HOH A 20 820 73 HOH HOH . F 4 HOH A 21 821 112 HOH HOH . F 4 HOH A 22 822 11 HOH HOH . F 4 HOH A 23 823 7 HOH HOH . F 4 HOH A 24 824 27 HOH HOH . F 4 HOH A 25 825 34 HOH HOH . F 4 HOH A 26 826 106 HOH HOH . F 4 HOH A 27 827 139 HOH HOH . F 4 HOH A 28 828 141 HOH HOH . F 4 HOH A 29 829 35 HOH HOH . F 4 HOH A 30 830 175 HOH HOH . F 4 HOH A 31 831 17 HOH HOH . F 4 HOH A 32 832 6 HOH HOH . F 4 HOH A 33 833 42 HOH HOH . F 4 HOH A 34 834 72 HOH HOH . F 4 HOH A 35 835 114 HOH HOH . F 4 HOH A 36 836 21 HOH HOH . F 4 HOH A 37 837 3 HOH HOH . F 4 HOH A 38 838 85 HOH HOH . F 4 HOH A 39 839 115 HOH HOH . F 4 HOH A 40 840 70 HOH HOH . F 4 HOH A 41 841 159 HOH HOH . F 4 HOH A 42 842 24 HOH HOH . F 4 HOH A 43 843 50 HOH HOH . F 4 HOH A 44 844 92 HOH HOH . F 4 HOH A 45 845 91 HOH HOH . F 4 HOH A 46 846 169 HOH HOH . F 4 HOH A 47 847 5 HOH HOH . F 4 HOH A 48 848 4 HOH HOH . F 4 HOH A 49 849 64 HOH HOH . F 4 HOH A 50 850 19 HOH HOH . F 4 HOH A 51 851 52 HOH HOH . F 4 HOH A 52 852 104 HOH HOH . F 4 HOH A 53 853 10 HOH HOH . F 4 HOH A 54 854 33 HOH HOH . F 4 HOH A 55 855 143 HOH HOH . F 4 HOH A 56 856 118 HOH HOH . F 4 HOH A 57 857 90 HOH HOH . F 4 HOH A 58 858 47 HOH HOH . F 4 HOH A 59 859 41 HOH HOH . F 4 HOH A 60 860 13 HOH HOH . F 4 HOH A 61 861 31 HOH HOH . F 4 HOH A 62 862 130 HOH HOH . F 4 HOH A 63 863 65 HOH HOH . F 4 HOH A 64 864 150 HOH HOH . F 4 HOH A 65 865 174 HOH HOH . F 4 HOH A 66 866 59 HOH HOH . F 4 HOH A 67 867 117 HOH HOH . F 4 HOH A 68 868 81 HOH HOH . F 4 HOH A 69 869 8 HOH HOH . F 4 HOH A 70 870 101 HOH HOH . F 4 HOH A 71 871 62 HOH HOH . F 4 HOH A 72 872 167 HOH HOH . F 4 HOH A 73 873 79 HOH HOH . F 4 HOH A 74 874 176 HOH HOH . F 4 HOH A 75 875 53 HOH HOH . F 4 HOH A 76 876 45 HOH HOH . F 4 HOH A 77 877 84 HOH HOH . F 4 HOH A 78 878 54 HOH HOH . F 4 HOH A 79 879 12 HOH HOH . F 4 HOH A 80 880 80 HOH HOH . F 4 HOH A 81 881 145 HOH HOH . F 4 HOH A 82 882 30 HOH HOH . F 4 HOH A 83 883 75 HOH HOH . F 4 HOH A 84 884 76 HOH HOH . F 4 HOH A 85 885 168 HOH HOH . F 4 HOH A 86 886 22 HOH HOH . F 4 HOH A 87 887 88 HOH HOH . F 4 HOH A 88 888 49 HOH HOH . F 4 HOH A 89 889 147 HOH HOH . F 4 HOH A 90 890 20 HOH HOH . F 4 HOH A 91 891 68 HOH HOH . F 4 HOH A 92 892 55 HOH HOH . F 4 HOH A 93 893 136 HOH HOH . F 4 HOH A 94 894 9 HOH HOH . F 4 HOH A 95 895 93 HOH HOH . F 4 HOH A 96 896 28 HOH HOH . F 4 HOH A 97 897 23 HOH HOH . F 4 HOH A 98 898 57 HOH HOH . F 4 HOH A 99 899 40 HOH HOH . F 4 HOH A 100 900 77 HOH HOH . F 4 HOH A 101 901 142 HOH HOH . F 4 HOH A 102 902 26 HOH HOH . F 4 HOH A 103 903 172 HOH HOH . F 4 HOH A 104 904 89 HOH HOH . F 4 HOH A 105 905 132 HOH HOH . F 4 HOH A 106 906 160 HOH HOH . F 4 HOH A 107 907 58 HOH HOH . F 4 HOH A 108 908 122 HOH HOH . F 4 HOH A 109 909 138 HOH HOH . F 4 HOH A 110 910 156 HOH HOH . F 4 HOH A 111 911 129 HOH HOH . F 4 HOH A 112 912 44 HOH HOH . F 4 HOH A 113 913 113 HOH HOH . F 4 HOH A 114 914 56 HOH HOH . F 4 HOH A 115 915 14 HOH HOH . F 4 HOH A 116 916 69 HOH HOH . F 4 HOH A 117 917 67 HOH HOH . F 4 HOH A 118 918 110 HOH HOH . F 4 HOH A 119 919 94 HOH HOH . F 4 HOH A 120 920 38 HOH HOH . F 4 HOH A 121 921 157 HOH HOH . F 4 HOH A 122 922 135 HOH HOH . F 4 HOH A 123 923 95 HOH HOH . F 4 HOH A 124 924 105 HOH HOH . F 4 HOH A 125 925 179 HOH HOH . F 4 HOH A 126 926 120 HOH HOH . F 4 HOH A 127 927 202 HOH HOH . F 4 HOH A 128 928 25 HOH HOH . F 4 HOH A 129 929 131 HOH HOH . F 4 HOH A 130 930 29 HOH HOH . F 4 HOH A 131 931 96 HOH HOH . F 4 HOH A 132 932 109 HOH HOH . F 4 HOH A 133 933 177 HOH HOH . F 4 HOH A 134 934 153 HOH HOH . F 4 HOH A 135 935 78 HOH HOH . F 4 HOH A 136 936 97 HOH HOH . F 4 HOH A 137 937 124 HOH HOH . F 4 HOH A 138 938 83 HOH HOH . F 4 HOH A 139 939 165 HOH HOH . F 4 HOH A 140 940 178 HOH HOH . F 4 HOH A 141 941 98 HOH HOH . F 4 HOH A 142 942 43 HOH HOH . F 4 HOH A 143 943 133 HOH HOH . F 4 HOH A 144 944 149 HOH HOH . F 4 HOH A 145 945 181 HOH HOH . F 4 HOH A 146 946 46 HOH HOH . F 4 HOH A 147 947 87 HOH HOH . F 4 HOH A 148 948 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 DVJ . . . E 3 37.862 25.488 17.609 1 23.97 ? C4 DVJ 704 A 1 HETATM 2 C C6 DVJ . . . E 3 35.494 26.178 17.752 1 12.48 ? C6 DVJ 704 A 1 HETATM 3 C C11 DVJ . . . E 3 35.012 27.96 13.42 1 10.54 ? C11 DVJ 704 A 1 HETATM 4 C C7 DVJ . . . E 3 34.563 26.696 16.937 1 16.18 ? C7 DVJ 704 A 1 HETATM 5 C C8 DVJ . . . E 3 35.139 26.88 15.667 1 16.73 ? C8 DVJ 704 A 1 HETATM 6 C C12 DVJ . . . E 3 36.292 27.698 13.005 1 13.46 ? C12 DVJ 704 A 1 HETATM 7 C C13 DVJ . . . E 3 36.793 28.309 11.829 1 14.48 ? C13 DVJ 704 A 1 HETATM 8 N N2 DVJ . . . E 3 36.602 25.18 19.703 1 30.56 ? N2 DVJ 704 A 1 HETATM 9 C C3 DVJ . . . E 3 37.808 25.782 19.113 1 29 ? C3 DVJ 704 A 1 HETATM 10 C C1 DVJ . . . E 3 36.664 25.237 21.172 1 31 ? C1 DVJ 704 A 1 HETATM 11 N N5 DVJ . . . E 3 36.629 26.028 17.032 1 13.58 ? N5 DVJ 704 A 1 HETATM 12 N N9 DVJ . . . E 3 36.387 26.471 15.731 1 13.46 ? N9 DVJ 704 A 1 HETATM 13 N N10 DVJ . . . E 3 34.443 27.396 14.564 1 17.16 ? N10 DVJ 704 A 1 HETATM 14 N N14 DVJ . . . E 3 36.03 29.125 11.139 1 17.08 ? N14 DVJ 704 A 1 HETATM 15 N N15 DVJ . . . E 3 34.72 29.404 11.539 1 18.33 ? N15 DVJ 704 A 1 HETATM 16 C C17 DVJ . . . E 3 34.213 28.839 12.65 1 13.73 ? C17 DVJ 704 A 1 HETATM 17 O O18 DVJ . . . E 3 33.067 29.087 12.995 1 17.89 ? O18 DVJ 704 A 1 HETATM 18 C C19 DVJ . . . E 3 38.183 28.023 11.373 1 8.93 ? C19 DVJ 704 A 1 HETATM 19 C C20 DVJ . . . E 3 39.213 27.927 12.309 1 12.21 ? C20 DVJ 704 A 1 HETATM 20 C C21 DVJ . . . E 3 40.504 27.654 11.897 1 12.65 ? C21 DVJ 704 A 1 HETATM 21 C C22 DVJ . . . E 3 40.791 27.474 10.556 1 15.37 ? C22 DVJ 704 A 1 HETATM 22 C C23 DVJ . . . E 3 39.774 27.562 9.616 1 10.21 ? C23 DVJ 704 A 1 HETATM 23 C C24 DVJ . . . E 3 38.476 27.83 10.021 1 10.29 ? C24 DVJ 704 A 1 HETATM 24 C C25 DVJ . . . E 3 37.411 27.927 8.962 1 5.98 ? C25 DVJ 704 A 1 HETATM 25 C C26 DVJ . . . E 3 37.475 29.341 8.375 1 12.98 ? C26 DVJ 704 A 1 HETATM 26 O O27 DVJ . . . E 3 36.59 29.442 7.256 1 15.7 ? O27 DVJ 704 A 1 HETATM 27 N N28 DVJ . . . E 3 40.036 27.379 8.253 1 15.84 ? N28 DVJ 704 A 1 HETATM 28 C C29 DVJ . . . E 3 40.689 28.302 7.519 1 17.09 ? C29 DVJ 704 A 1 HETATM 29 O O30 DVJ . . . E 3 41.077 29.334 8.035 1 15.38 ? O30 DVJ 704 A 1 HETATM 30 C C31 DVJ . . . E 3 40.93 28.047 6.09 1 18.97 ? C31 DVJ 704 A 1 HETATM 31 C C32 DVJ . . . E 3 40.53 26.95 5.44 1 20.47 ? C32 DVJ 704 A 1 HETATM 32 C C33 DVJ . . . E 3 40.861 26.892 4.076 1 23.36 ? C33 DVJ 704 A 1 HETATM 33 C C34 DVJ . . . E 3 40.576 25.873 3.134 1 16.92 ? C34 DVJ 704 A 1 HETATM 34 C C35 DVJ . . . E 3 40.981 25.994 1.841 1 15.56 ? C35 DVJ 704 A 1 HETATM 35 C C36 DVJ . . . E 3 41.682 27.118 1.419 1 17.61 ? C36 DVJ 704 A 1 HETATM 36 C C37 DVJ . . . E 3 41.974 28.124 2.309 1 18.38 ? C37 DVJ 704 A 1 HETATM 37 C C38 DVJ . . . E 3 41.567 28.022 3.646 1 15.76 ? C38 DVJ 704 A 1 HETATM 38 S S39 DVJ . . . E 3 41.785 29.123 5.001 1 22.72 ? S39 DVJ 704 A 1 HETATM 39 C C40 DVJ . . . E 3 35.359 25.812 19.211 1 20.95 ? C40 DVJ 704 A 1 HETATM 40 H H16 DVJ . . . E 3 34.173 30.006 11.011 1 22.15 ? H16 DVJ 704 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 40 #