data_6BKH # _model_server_result.job_id RKGVLyemsfnTt31-uF6Hkg _model_server_result.datetime_utc '2024-11-18 03:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":705}' # _entry.id 6BKH # _exptl.entry_id 6BKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.597 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(hydroxymethyl)-3-{5-[(5-methyl-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-2-yl)amino]-6-oxo-1,6-dihydropyridazin-3-yl}phenyl]-1-benzothiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BKH _cell.length_a 108.213 _cell.length_b 108.213 _cell.length_c 41.794 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 89 A GLY 480 1_555 A N OCS 90 A OCS 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C OCS 90 A OCS 481 1_555 A N LEU 91 A LEU 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C27 H25 N7 O3 S' _chem_comp.formula_weight 527.597 _chem_comp.id DVD _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(hydroxymethyl)-3-{5-[(5-methyl-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-2-yl)amino]-6-oxo-1,6-dihydropyridazin-3-yl}phenyl]-1-benzothiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6BKH _atom_sites.fract_transf_matrix[1][1] 0.009241 _atom_sites.fract_transf_matrix[1][2] 0.005335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 2 SO4 A 1 703 3 SO4 SO4 . E 2 SO4 A 1 704 4 SO4 SO4 . F 3 DVD A 1 705 1 DVD DRG . G 4 HOH A 1 801 94 HOH HOH . G 4 HOH A 2 802 56 HOH HOH . G 4 HOH A 3 803 136 HOH HOH . G 4 HOH A 4 804 115 HOH HOH . G 4 HOH A 5 805 202 HOH HOH . G 4 HOH A 6 806 33 HOH HOH . G 4 HOH A 7 807 131 HOH HOH . G 4 HOH A 8 808 251 HOH HOH . G 4 HOH A 9 809 185 HOH HOH . G 4 HOH A 10 810 98 HOH HOH . G 4 HOH A 11 811 28 HOH HOH . G 4 HOH A 12 812 72 HOH HOH . G 4 HOH A 13 813 109 HOH HOH . G 4 HOH A 14 814 119 HOH HOH . G 4 HOH A 15 815 37 HOH HOH . G 4 HOH A 16 816 49 HOH HOH . G 4 HOH A 17 817 121 HOH HOH . G 4 HOH A 18 818 130 HOH HOH . G 4 HOH A 19 819 23 HOH HOH . G 4 HOH A 20 820 215 HOH HOH . G 4 HOH A 21 821 164 HOH HOH . G 4 HOH A 22 822 169 HOH HOH . G 4 HOH A 23 823 193 HOH HOH . G 4 HOH A 24 824 233 HOH HOH . G 4 HOH A 25 825 68 HOH HOH . G 4 HOH A 26 826 86 HOH HOH . G 4 HOH A 27 827 30 HOH HOH . G 4 HOH A 28 828 32 HOH HOH . G 4 HOH A 29 829 14 HOH HOH . G 4 HOH A 30 830 108 HOH HOH . G 4 HOH A 31 831 184 HOH HOH . G 4 HOH A 32 832 17 HOH HOH . G 4 HOH A 33 833 22 HOH HOH . G 4 HOH A 34 834 70 HOH HOH . G 4 HOH A 35 835 147 HOH HOH . G 4 HOH A 36 836 117 HOH HOH . G 4 HOH A 37 837 4 HOH HOH . G 4 HOH A 38 838 50 HOH HOH . G 4 HOH A 39 839 85 HOH HOH . G 4 HOH A 40 840 189 HOH HOH . G 4 HOH A 41 841 57 HOH HOH . G 4 HOH A 42 842 88 HOH HOH . G 4 HOH A 43 843 148 HOH HOH . G 4 HOH A 44 844 129 HOH HOH . G 4 HOH A 45 845 146 HOH HOH . G 4 HOH A 46 846 149 HOH HOH . G 4 HOH A 47 847 246 HOH HOH . G 4 HOH A 48 848 41 HOH HOH . G 4 HOH A 49 849 7 HOH HOH . G 4 HOH A 50 850 82 HOH HOH . G 4 HOH A 51 851 203 HOH HOH . G 4 HOH A 52 852 15 HOH HOH . G 4 HOH A 53 853 238 HOH HOH . G 4 HOH A 54 854 228 HOH HOH . G 4 HOH A 55 855 25 HOH HOH . G 4 HOH A 56 856 141 HOH HOH . G 4 HOH A 57 857 10 HOH HOH . G 4 HOH A 58 858 104 HOH HOH . G 4 HOH A 59 859 60 HOH HOH . G 4 HOH A 60 860 250 HOH HOH . G 4 HOH A 61 861 58 HOH HOH . G 4 HOH A 62 862 137 HOH HOH . G 4 HOH A 63 863 182 HOH HOH . G 4 HOH A 64 864 20 HOH HOH . G 4 HOH A 65 865 40 HOH HOH . G 4 HOH A 66 866 244 HOH HOH . G 4 HOH A 67 867 69 HOH HOH . G 4 HOH A 68 868 107 HOH HOH . G 4 HOH A 69 869 213 HOH HOH . G 4 HOH A 70 870 151 HOH HOH . G 4 HOH A 71 871 35 HOH HOH . G 4 HOH A 72 872 55 HOH HOH . G 4 HOH A 73 873 127 HOH HOH . G 4 HOH A 74 874 52 HOH HOH . G 4 HOH A 75 875 24 HOH HOH . G 4 HOH A 76 876 3 HOH HOH . G 4 HOH A 77 877 186 HOH HOH . G 4 HOH A 78 878 134 HOH HOH . G 4 HOH A 79 879 16 HOH HOH . G 4 HOH A 80 880 9 HOH HOH . G 4 HOH A 81 881 46 HOH HOH . G 4 HOH A 82 882 43 HOH HOH . G 4 HOH A 83 883 116 HOH HOH . G 4 HOH A 84 884 77 HOH HOH . G 4 HOH A 85 885 140 HOH HOH . G 4 HOH A 86 886 97 HOH HOH . G 4 HOH A 87 887 18 HOH HOH . G 4 HOH A 88 888 201 HOH HOH . G 4 HOH A 89 889 197 HOH HOH . G 4 HOH A 90 890 111 HOH HOH . G 4 HOH A 91 891 176 HOH HOH . G 4 HOH A 92 892 155 HOH HOH . G 4 HOH A 93 893 81 HOH HOH . G 4 HOH A 94 894 106 HOH HOH . G 4 HOH A 95 895 38 HOH HOH . G 4 HOH A 96 896 114 HOH HOH . G 4 HOH A 97 897 19 HOH HOH . G 4 HOH A 98 898 239 HOH HOH . G 4 HOH A 99 899 78 HOH HOH . G 4 HOH A 100 900 54 HOH HOH . G 4 HOH A 101 901 31 HOH HOH . G 4 HOH A 102 902 44 HOH HOH . G 4 HOH A 103 903 207 HOH HOH . G 4 HOH A 104 904 11 HOH HOH . G 4 HOH A 105 905 76 HOH HOH . G 4 HOH A 106 906 188 HOH HOH . G 4 HOH A 107 907 73 HOH HOH . G 4 HOH A 108 908 21 HOH HOH . G 4 HOH A 109 909 8 HOH HOH . G 4 HOH A 110 910 67 HOH HOH . G 4 HOH A 111 911 51 HOH HOH . G 4 HOH A 112 912 5 HOH HOH . G 4 HOH A 113 913 95 HOH HOH . G 4 HOH A 114 914 158 HOH HOH . G 4 HOH A 115 915 150 HOH HOH . G 4 HOH A 116 916 92 HOH HOH . G 4 HOH A 117 917 180 HOH HOH . G 4 HOH A 118 918 59 HOH HOH . G 4 HOH A 119 919 6 HOH HOH . G 4 HOH A 120 920 62 HOH HOH . G 4 HOH A 121 921 29 HOH HOH . G 4 HOH A 122 922 231 HOH HOH . G 4 HOH A 123 923 39 HOH HOH . G 4 HOH A 124 924 99 HOH HOH . G 4 HOH A 125 925 36 HOH HOH . G 4 HOH A 126 926 172 HOH HOH . G 4 HOH A 127 927 12 HOH HOH . G 4 HOH A 128 928 47 HOH HOH . G 4 HOH A 129 929 241 HOH HOH . G 4 HOH A 130 930 27 HOH HOH . G 4 HOH A 131 931 248 HOH HOH . G 4 HOH A 132 932 118 HOH HOH . G 4 HOH A 133 933 219 HOH HOH . G 4 HOH A 134 934 133 HOH HOH . G 4 HOH A 135 935 171 HOH HOH . G 4 HOH A 136 936 26 HOH HOH . G 4 HOH A 137 937 162 HOH HOH . G 4 HOH A 138 938 65 HOH HOH . G 4 HOH A 139 939 113 HOH HOH . G 4 HOH A 140 940 236 HOH HOH . G 4 HOH A 141 941 112 HOH HOH . G 4 HOH A 142 942 13 HOH HOH . G 4 HOH A 143 943 83 HOH HOH . G 4 HOH A 144 944 126 HOH HOH . G 4 HOH A 145 945 159 HOH HOH . G 4 HOH A 146 946 196 HOH HOH . G 4 HOH A 147 947 225 HOH HOH . G 4 HOH A 148 948 132 HOH HOH . G 4 HOH A 149 949 216 HOH HOH . G 4 HOH A 150 950 48 HOH HOH . G 4 HOH A 151 951 214 HOH HOH . G 4 HOH A 152 952 142 HOH HOH . G 4 HOH A 153 953 71 HOH HOH . G 4 HOH A 154 954 101 HOH HOH . G 4 HOH A 155 955 175 HOH HOH . G 4 HOH A 156 956 243 HOH HOH . G 4 HOH A 157 957 222 HOH HOH . G 4 HOH A 158 958 173 HOH HOH . G 4 HOH A 159 959 234 HOH HOH . G 4 HOH A 160 960 66 HOH HOH . G 4 HOH A 161 961 84 HOH HOH . G 4 HOH A 162 962 91 HOH HOH . G 4 HOH A 163 963 152 HOH HOH . G 4 HOH A 164 964 199 HOH HOH . G 4 HOH A 165 965 167 HOH HOH . G 4 HOH A 166 966 110 HOH HOH . G 4 HOH A 167 967 156 HOH HOH . G 4 HOH A 168 968 237 HOH HOH . G 4 HOH A 169 969 89 HOH HOH . G 4 HOH A 170 970 160 HOH HOH . G 4 HOH A 171 971 42 HOH HOH . G 4 HOH A 172 972 232 HOH HOH . G 4 HOH A 173 973 181 HOH HOH . G 4 HOH A 174 974 161 HOH HOH . G 4 HOH A 175 975 61 HOH HOH . G 4 HOH A 176 976 135 HOH HOH . G 4 HOH A 177 977 226 HOH HOH . G 4 HOH A 178 978 211 HOH HOH . G 4 HOH A 179 979 145 HOH HOH . G 4 HOH A 180 980 245 HOH HOH . G 4 HOH A 181 981 74 HOH HOH . G 4 HOH A 182 982 242 HOH HOH . G 4 HOH A 183 983 120 HOH HOH . G 4 HOH A 184 984 217 HOH HOH . G 4 HOH A 185 985 123 HOH HOH . G 4 HOH A 186 986 224 HOH HOH . G 4 HOH A 187 987 192 HOH HOH . G 4 HOH A 188 988 195 HOH HOH . G 4 HOH A 189 989 247 HOH HOH . G 4 HOH A 190 990 96 HOH HOH . G 4 HOH A 191 991 170 HOH HOH . G 4 HOH A 192 992 183 HOH HOH . G 4 HOH A 193 993 227 HOH HOH . G 4 HOH A 194 994 249 HOH HOH . G 4 HOH A 195 995 221 HOH HOH . G 4 HOH A 196 996 63 HOH HOH . G 4 HOH A 197 997 102 HOH HOH . G 4 HOH A 198 998 124 HOH HOH . G 4 HOH A 199 999 220 HOH HOH . G 4 HOH A 200 1000 208 HOH HOH . G 4 HOH A 201 1001 139 HOH HOH . G 4 HOH A 202 1002 187 HOH HOH . G 4 HOH A 203 1003 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 DVD . . . F 3 95.12 113.795 -17.864 1 23.18 ? C4 DVD 705 A 1 HETATM 2 C C6 DVD . . . F 3 94.531 111.389 -18.107 1 18.57 ? C6 DVD 705 A 1 HETATM 3 C C11 DVD . . . F 3 95.812 110.193 -13.827 1 13.47 ? C11 DVD 705 A 1 HETATM 4 C C7 DVD . . . F 3 94.512 110.307 -17.335 1 13.83 ? C7 DVD 705 A 1 HETATM 5 C C8 DVD . . . F 3 94.96 110.718 -16.065 1 14.25 ? C8 DVD 705 A 1 HETATM 6 C C12 DVD . . . F 3 96.291 111.447 -13.484 1 15.98 ? C12 DVD 705 A 1 HETATM 7 C C13 DVD . . . F 3 97.036 111.531 -12.275 1 14.95 ? C13 DVD 705 A 1 HETATM 8 N N2 DVD . . . F 3 94.184 112.922 -19.998 1 27.14 ? N2 DVD 705 A 1 HETATM 9 C C3 DVD . . . F 3 95.28 113.696 -19.397 1 29.16 ? C3 DVD 705 A 1 HETATM 10 C C1 DVD . . . F 3 94.218 112.998 -21.472 1 24.61 ? C1 DVD 705 A 1 HETATM 11 C C17 DVD . . . F 3 96.065 109.076 -13.011 1 16.57 ? C17 DVD 705 A 1 HETATM 12 C C19 DVD . . . F 3 97.625 112.791 -11.783 1 15.57 ? C19 DVD 705 A 1 HETATM 13 C C20 DVD . . . F 3 98.377 113.564 -12.664 1 16.57 ? C20 DVD 705 A 1 HETATM 14 C C21 DVD . . . F 3 98.939 114.748 -12.241 1 22.8 ? C21 DVD 705 A 1 HETATM 15 C C22 DVD . . . F 3 98.761 115.136 -10.928 1 20.23 ? C22 DVD 705 A 1 HETATM 16 C C23 DVD . . . F 3 98.029 114.378 -10.024 1 17.25 ? C23 DVD 705 A 1 HETATM 17 C C24 DVD . . . F 3 97.448 113.178 -10.438 1 15.86 ? C24 DVD 705 A 1 HETATM 18 C C25 DVD . . . F 3 96.591 112.372 -9.488 1 21.41 ? C25 DVD 705 A 1 HETATM 19 C C28 DVD . . . F 3 98.816 114.77 -7.757 1 27.7 ? C28 DVD 705 A 1 HETATM 20 C C30 DVD . . . F 3 98.585 115.181 -6.364 1 24.54 ? C30 DVD 705 A 1 HETATM 21 C C31 DVD . . . F 3 97.416 115.486 -5.735 1 15.95 ? C31 DVD 705 A 1 HETATM 22 C C32 DVD . . . F 3 97.569 115.807 -4.363 1 18.85 ? C32 DVD 705 A 1 HETATM 23 C C33 DVD . . . F 3 96.602 116.187 -3.412 1 18.22 ? C33 DVD 705 A 1 HETATM 24 C C34 DVD . . . F 3 96.955 116.46 -2.126 1 24.02 ? C34 DVD 705 A 1 HETATM 25 C C35 DVD . . . F 3 98.272 116.371 -1.705 1 29.88 ? C35 DVD 705 A 1 HETATM 26 C C36 DVD . . . F 3 99.252 115.999 -2.594 1 21.49 ? C36 DVD 705 A 1 HETATM 27 C C37 DVD . . . F 3 98.904 115.718 -3.909 1 17.56 ? C37 DVD 705 A 1 HETATM 28 C C39 DVD . . . F 3 94.171 111.497 -19.576 1 18.81 ? C39 DVD 705 A 1 HETATM 29 N N10 DVD . . . F 3 95.082 109.909 -14.969 1 13.5 ? N10 DVD 705 A 1 HETATM 30 N N14 DVD . . . F 3 97.258 110.466 -11.53 1 16.31 ? N14 DVD 705 A 1 HETATM 31 N N15 DVD . . . F 3 96.769 109.226 -11.888 1 15.11 ? N15 DVD 705 A 1 HETATM 32 N N27 DVD . . . F 3 97.836 114.795 -8.692 1 17.18 ? N27 DVD 705 A 1 HETATM 33 N N5 DVD . . . F 3 94.969 112.421 -17.375 1 16.55 ? N5 DVD 705 A 1 HETATM 34 N N9 DVD . . . F 3 95.233 111.993 -16.09 1 16.04 ? N9 DVD 705 A 1 HETATM 35 O O18 DVD . . . F 3 95.639 107.948 -13.324 1 16.09 ? O18 DVD 705 A 1 HETATM 36 O O26 DVD . . . F 3 97.276 111.721 -8.415 1 26.11 ? O26 DVD 705 A 1 HETATM 37 O O29 DVD . . . F 3 99.941 114.363 -8.045 1 22.12 ? O29 DVD 705 A 1 HETATM 38 S S38 DVD . . . F 3 99.936 115.232 -5.236 1 24.05 ? S38 DVD 705 A 1 HETATM 39 H H16 DVD . . . F 3 96.948 108.457 -11.325 1 18.13 ? H16 DVD 705 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #