data_6BKK # _model_server_result.job_id tRL-mZTbcNlutZOp4Goa9A _model_server_result.datetime_utc '2025-01-10 17:24:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":101}' # _entry.id 6BKK # _exptl.entry_id 6BKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.249 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.17 _cell.angle_gamma 90 _cell.entry_id 6BKK _cell.length_a 44.22 _cell.length_b 52.05 _cell.length_c 48.72 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,M,N,O,P 1 1 E,F,G,H,K,L,Q,R,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 21 1_555 B N SER 2 B SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C ACE 1 C ACE 21 1_555 C N SER 2 C SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 F C ACE 1 F ACE 21 1_555 F N SER 2 F SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 G C ACE 1 G ACE 21 1_555 G N SER 2 G SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 H C ACE 1 H ACE 21 1_555 H N SER 2 H SER 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C10 H17 N' _chem_comp.formula_weight 151.249 _chem_comp.id 308 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,5S,7S)-tricyclo[3.3.1.1~3,7~]decan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Amantadine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C10 308 sing 1 n n C10 C7 308 sing 2 n n C10 C8 308 sing 3 n n C10 C9 308 sing 4 n n C7 C1 308 sing 5 n n C1 C6 308 sing 6 n n C1 C2 308 sing 7 n n C8 C5 308 sing 8 n n C5 C6 308 sing 9 n n C5 C4 308 sing 10 n n C4 C3 308 sing 11 n n C9 C3 308 sing 12 n n C3 C2 308 sing 13 n n N1 HN1 308 sing 14 n n N1 HN1A 308 sing 15 n n C7 H7 308 sing 16 n n C7 H7A 308 sing 17 n n C1 H1 308 sing 18 n n C8 H8 308 sing 19 n n C8 H8A 308 sing 20 n n C5 H5 308 sing 21 n n C6 H6 308 sing 22 n n C6 H6A 308 sing 23 n n C4 H4 308 sing 24 n n C4 H4A 308 sing 25 n n C9 H9 308 sing 26 n n C9 H9A 308 sing 27 n n C3 H3 308 sing 28 n n C2 H2 308 sing 29 n n C2 H2A 308 sing 30 n n # _atom_sites.entry_id 6BKK _atom_sites.fract_transf_matrix[1][1] 0.022614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007422 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019212 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 308 B 1 101 1 308 308 . J 3 CL C 1 101 1 CL CL . K 3 CL E 1 101 1 CL CL . L 2 308 F 1 101 1 308 308 . M 4 HOH A 1 101 3 HOH HOH . M 4 HOH A 2 102 12 HOH HOH . M 4 HOH A 3 103 1 HOH HOH . M 4 HOH A 4 104 69 HOH HOH . M 4 HOH A 5 105 71 HOH HOH . M 4 HOH A 6 106 59 HOH HOH . M 4 HOH A 7 107 50 HOH HOH . M 4 HOH A 8 108 105 HOH HOH . M 4 HOH A 9 109 92 HOH HOH . M 4 HOH A 10 110 70 HOH HOH . M 4 HOH A 11 111 67 HOH HOH . M 4 HOH A 12 112 57 HOH HOH . N 4 HOH B 1 201 55 HOH HOH . N 4 HOH B 2 202 27 HOH HOH . N 4 HOH B 3 203 65 HOH HOH . N 4 HOH B 4 204 6 HOH HOH . N 4 HOH B 5 205 23 HOH HOH . N 4 HOH B 6 206 64 HOH HOH . N 4 HOH B 7 207 109 HOH HOH . N 4 HOH B 8 208 43 HOH HOH . N 4 HOH B 9 209 89 HOH HOH . N 4 HOH B 10 210 84 HOH HOH . N 4 HOH B 11 211 37 HOH HOH . O 4 HOH C 1 201 8 HOH HOH . O 4 HOH C 2 202 11 HOH HOH . O 4 HOH C 3 203 47 HOH HOH . O 4 HOH C 4 204 25 HOH HOH . O 4 HOH C 5 205 5 HOH HOH . O 4 HOH C 6 206 62 HOH HOH . O 4 HOH C 7 207 7 HOH HOH . O 4 HOH C 8 208 10 HOH HOH . O 4 HOH C 9 209 93 HOH HOH . O 4 HOH C 10 210 73 HOH HOH . O 4 HOH C 11 211 58 HOH HOH . O 4 HOH C 12 212 79 HOH HOH . O 4 HOH C 13 213 74 HOH HOH . P 4 HOH D 1 101 21 HOH HOH . P 4 HOH D 2 102 81 HOH HOH . P 4 HOH D 3 103 99 HOH HOH . P 4 HOH D 4 104 24 HOH HOH . P 4 HOH D 5 105 9 HOH HOH . P 4 HOH D 6 106 42 HOH HOH . P 4 HOH D 7 107 22 HOH HOH . P 4 HOH D 8 108 45 HOH HOH . P 4 HOH D 9 109 36 HOH HOH . P 4 HOH D 10 110 72 HOH HOH . P 4 HOH D 11 111 85 HOH HOH . Q 4 HOH E 1 201 94 HOH HOH . Q 4 HOH E 2 202 13 HOH HOH . Q 4 HOH E 3 203 52 HOH HOH . Q 4 HOH E 4 204 14 HOH HOH . Q 4 HOH E 5 205 38 HOH HOH . Q 4 HOH E 6 206 2 HOH HOH . Q 4 HOH E 7 207 15 HOH HOH . Q 4 HOH E 8 208 87 HOH HOH . Q 4 HOH E 9 209 103 HOH HOH . Q 4 HOH E 10 210 49 HOH HOH . Q 4 HOH E 11 211 86 HOH HOH . Q 4 HOH E 12 212 30 HOH HOH . Q 4 HOH E 13 213 39 HOH HOH . Q 4 HOH E 14 214 66 HOH HOH . Q 4 HOH E 15 215 88 HOH HOH . R 4 HOH F 1 201 53 HOH HOH . R 4 HOH F 2 202 16 HOH HOH . R 4 HOH F 3 203 75 HOH HOH . R 4 HOH F 4 204 80 HOH HOH . R 4 HOH F 5 205 76 HOH HOH . R 4 HOH F 6 206 31 HOH HOH . R 4 HOH F 7 207 96 HOH HOH . R 4 HOH F 8 208 51 HOH HOH . R 4 HOH F 9 209 60 HOH HOH . R 4 HOH F 10 210 40 HOH HOH . R 4 HOH F 11 211 28 HOH HOH . R 4 HOH F 12 212 108 HOH HOH . R 4 HOH F 13 213 56 HOH HOH . R 4 HOH F 14 214 33 HOH HOH . S 4 HOH G 1 101 19 HOH HOH . S 4 HOH G 2 102 29 HOH HOH . S 4 HOH G 3 103 104 HOH HOH . S 4 HOH G 4 104 97 HOH HOH . S 4 HOH G 5 105 26 HOH HOH . S 4 HOH G 6 106 54 HOH HOH . S 4 HOH G 7 107 107 HOH HOH . S 4 HOH G 8 108 90 HOH HOH . S 4 HOH G 9 109 46 HOH HOH . S 4 HOH G 10 110 102 HOH HOH . S 4 HOH G 11 111 35 HOH HOH . S 4 HOH G 12 112 34 HOH HOH . S 4 HOH G 13 113 44 HOH HOH . S 4 HOH G 14 114 41 HOH HOH . S 4 HOH G 15 115 32 HOH HOH . S 4 HOH G 16 116 82 HOH HOH . S 4 HOH G 17 117 48 HOH HOH . S 4 HOH G 18 118 83 HOH HOH . S 4 HOH G 19 119 68 HOH HOH . T 4 HOH H 1 101 91 HOH HOH . T 4 HOH H 2 102 20 HOH HOH . T 4 HOH H 3 103 17 HOH HOH . T 4 HOH H 4 104 98 HOH HOH . T 4 HOH H 5 105 18 HOH HOH . T 4 HOH H 6 106 63 HOH HOH . T 4 HOH H 7 107 95 HOH HOH . T 4 HOH H 8 108 100 HOH HOH . T 4 HOH H 9 109 61 HOH HOH . T 4 HOH H 10 110 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 308 . . . I 2 68.78 10.283 47.255 1 25.18 ? N1 308 101 B 1 HETATM 2 C C10 308 . . . I 2 67.42 10.497 46.797 1 28.31 ? C10 308 101 B 1 HETATM 3 C C7 308 . . . I 2 67.131 9.577 45.613 1 25.42 ? C7 308 101 B 1 HETATM 4 C C1 308 . . . I 2 65.701 9.804 45.129 1 19.62 ? C1 308 101 B 1 HETATM 5 C C8 308 . . . I 2 66.444 10.186 47.928 1 18.54 ? C8 308 101 B 1 HETATM 6 C C5 308 . . . I 2 65.014 10.417 47.447 1 18.79 ? C5 308 101 B 1 HETATM 7 C C6 308 . . . I 2 64.722 9.5 46.261 1 19.07 ? C6 308 101 B 1 HETATM 8 C C4 308 . . . I 2 64.848 11.871 47.013 1 14.01 ? C4 308 101 B 1 HETATM 9 C C9 308 . . . I 2 67.253 11.952 46.367 1 13.83 ? C9 308 101 B 1 HETATM 10 C C3 308 . . . I 2 65.824 12.178 45.88 1 15.01 ? C3 308 101 B 1 HETATM 11 C C2 308 . . . I 2 65.539 11.258 44.695 1 13.41 ? C2 308 101 B 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #