data_6BKW # _model_server_result.job_id 2syXorPVOXDbmWKQCKXehA _model_server_result.datetime_utc '2024-11-18 03:43:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":706}' # _entry.id 6BKW # _exptl.entry_id 6BKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BKW _cell.length_a 108.765 _cell.length_b 108.765 _cell.length_c 41.863 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 89 A GLY 480 1_555 A N OCS 90 A OCS 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C OCS 90 A OCS 481 1_555 A N LEU 91 A LEU 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 6BKW _atom_sites.fract_transf_matrix[1][1] 0.009194 _atom_sites.fract_transf_matrix[1][2] 0.005308 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 701 1 SO4 SO4 . C 2 SO4 A 1 702 2 SO4 SO4 . D 2 SO4 A 1 703 3 SO4 SO4 . E 3 DXM A 1 704 1 DXM XXX . F 4 FPZ A 1 705 1 FPZ F3P . G 5 GOL A 1 706 1 GOL GOL . H 5 GOL A 1 707 2 GOL GOL . I 6 HOH A 1 801 14 HOH HOH . I 6 HOH A 2 802 119 HOH HOH . I 6 HOH A 3 803 24 HOH HOH . I 6 HOH A 4 804 69 HOH HOH . I 6 HOH A 5 805 99 HOH HOH . I 6 HOH A 6 806 42 HOH HOH . I 6 HOH A 7 807 63 HOH HOH . I 6 HOH A 8 808 82 HOH HOH . I 6 HOH A 9 809 2 HOH HOH . I 6 HOH A 10 810 21 HOH HOH . I 6 HOH A 11 811 127 HOH HOH . I 6 HOH A 12 812 107 HOH HOH . I 6 HOH A 13 813 31 HOH HOH . I 6 HOH A 14 814 158 HOH HOH . I 6 HOH A 15 815 6 HOH HOH . I 6 HOH A 16 816 131 HOH HOH . I 6 HOH A 17 817 77 HOH HOH . I 6 HOH A 18 818 179 HOH HOH . I 6 HOH A 19 819 201 HOH HOH . I 6 HOH A 20 820 105 HOH HOH . I 6 HOH A 21 821 76 HOH HOH . I 6 HOH A 22 822 49 HOH HOH . I 6 HOH A 23 823 183 HOH HOH . I 6 HOH A 24 824 23 HOH HOH . I 6 HOH A 25 825 20 HOH HOH . I 6 HOH A 26 826 73 HOH HOH . I 6 HOH A 27 827 22 HOH HOH . I 6 HOH A 28 828 109 HOH HOH . I 6 HOH A 29 829 28 HOH HOH . I 6 HOH A 30 830 60 HOH HOH . I 6 HOH A 31 831 96 HOH HOH . I 6 HOH A 32 832 103 HOH HOH . I 6 HOH A 33 833 39 HOH HOH . I 6 HOH A 34 834 38 HOH HOH . I 6 HOH A 35 835 16 HOH HOH . I 6 HOH A 36 836 205 HOH HOH . I 6 HOH A 37 837 112 HOH HOH . I 6 HOH A 38 838 4 HOH HOH . I 6 HOH A 39 839 160 HOH HOH . I 6 HOH A 40 840 178 HOH HOH . I 6 HOH A 41 841 31 HOH HOH . I 6 HOH A 42 842 6 HOH HOH . I 6 HOH A 43 843 95 HOH HOH . I 6 HOH A 44 844 19 HOH HOH . I 6 HOH A 45 845 7 HOH HOH . I 6 HOH A 46 846 68 HOH HOH . I 6 HOH A 47 847 13 HOH HOH . I 6 HOH A 48 848 165 HOH HOH . I 6 HOH A 49 849 50 HOH HOH . I 6 HOH A 50 850 22 HOH HOH . I 6 HOH A 51 851 187 HOH HOH . I 6 HOH A 52 852 137 HOH HOH . I 6 HOH A 53 853 130 HOH HOH . I 6 HOH A 54 854 81 HOH HOH . I 6 HOH A 55 855 36 HOH HOH . I 6 HOH A 56 856 30 HOH HOH . I 6 HOH A 57 857 85 HOH HOH . I 6 HOH A 58 858 104 HOH HOH . I 6 HOH A 59 859 20 HOH HOH . I 6 HOH A 60 860 61 HOH HOH . I 6 HOH A 61 861 67 HOH HOH . I 6 HOH A 62 862 155 HOH HOH . I 6 HOH A 63 863 41 HOH HOH . I 6 HOH A 64 864 56 HOH HOH . I 6 HOH A 65 865 72 HOH HOH . I 6 HOH A 66 866 34 HOH HOH . I 6 HOH A 67 867 74 HOH HOH . I 6 HOH A 68 868 111 HOH HOH . I 6 HOH A 69 869 122 HOH HOH . I 6 HOH A 70 870 25 HOH HOH . I 6 HOH A 71 871 18 HOH HOH . I 6 HOH A 72 872 45 HOH HOH . I 6 HOH A 73 873 33 HOH HOH . I 6 HOH A 74 874 57 HOH HOH . I 6 HOH A 75 875 16 HOH HOH . I 6 HOH A 76 876 162 HOH HOH . I 6 HOH A 77 877 24 HOH HOH . I 6 HOH A 78 878 9 HOH HOH . I 6 HOH A 79 879 11 HOH HOH . I 6 HOH A 80 880 154 HOH HOH . I 6 HOH A 81 881 58 HOH HOH . I 6 HOH A 82 882 64 HOH HOH . I 6 HOH A 83 883 29 HOH HOH . I 6 HOH A 84 884 5 HOH HOH . I 6 HOH A 85 885 32 HOH HOH . I 6 HOH A 86 886 116 HOH HOH . I 6 HOH A 87 887 118 HOH HOH . I 6 HOH A 88 888 199 HOH HOH . I 6 HOH A 89 889 44 HOH HOH . I 6 HOH A 90 890 144 HOH HOH . I 6 HOH A 91 891 123 HOH HOH . I 6 HOH A 92 892 152 HOH HOH . I 6 HOH A 93 893 8 HOH HOH . I 6 HOH A 94 894 65 HOH HOH . I 6 HOH A 95 895 54 HOH HOH . I 6 HOH A 96 896 10 HOH HOH . I 6 HOH A 97 897 150 HOH HOH . I 6 HOH A 98 898 19 HOH HOH . I 6 HOH A 99 899 53 HOH HOH . I 6 HOH A 100 900 110 HOH HOH . I 6 HOH A 101 901 17 HOH HOH . I 6 HOH A 102 902 171 HOH HOH . I 6 HOH A 103 903 35 HOH HOH . I 6 HOH A 104 904 3 HOH HOH . I 6 HOH A 105 905 101 HOH HOH . I 6 HOH A 106 906 102 HOH HOH . I 6 HOH A 107 907 128 HOH HOH . I 6 HOH A 108 908 133 HOH HOH . I 6 HOH A 109 909 189 HOH HOH . I 6 HOH A 110 910 169 HOH HOH . I 6 HOH A 111 911 46 HOH HOH . I 6 HOH A 112 912 59 HOH HOH . I 6 HOH A 113 913 47 HOH HOH . I 6 HOH A 114 914 78 HOH HOH . I 6 HOH A 115 915 52 HOH HOH . I 6 HOH A 116 916 94 HOH HOH . I 6 HOH A 117 917 21 HOH HOH . I 6 HOH A 118 918 62 HOH HOH . I 6 HOH A 119 919 80 HOH HOH . I 6 HOH A 120 920 27 HOH HOH . I 6 HOH A 121 921 198 HOH HOH . I 6 HOH A 122 922 151 HOH HOH . I 6 HOH A 123 923 100 HOH HOH . I 6 HOH A 124 924 14 HOH HOH . I 6 HOH A 125 925 32 HOH HOH . I 6 HOH A 126 926 18 HOH HOH . I 6 HOH A 127 927 40 HOH HOH . I 6 HOH A 128 928 55 HOH HOH . I 6 HOH A 129 929 51 HOH HOH . I 6 HOH A 130 930 15 HOH HOH . I 6 HOH A 131 931 115 HOH HOH . I 6 HOH A 132 932 114 HOH HOH . I 6 HOH A 133 933 166 HOH HOH . I 6 HOH A 134 934 12 HOH HOH . I 6 HOH A 135 935 135 HOH HOH . I 6 HOH A 136 936 140 HOH HOH . I 6 HOH A 137 937 25 HOH HOH . I 6 HOH A 138 938 89 HOH HOH . I 6 HOH A 139 939 125 HOH HOH . I 6 HOH A 140 940 192 HOH HOH . I 6 HOH A 141 941 197 HOH HOH . I 6 HOH A 142 942 93 HOH HOH . I 6 HOH A 143 943 207 HOH HOH . I 6 HOH A 144 944 84 HOH HOH . I 6 HOH A 145 945 106 HOH HOH . I 6 HOH A 146 946 124 HOH HOH . I 6 HOH A 147 947 196 HOH HOH . I 6 HOH A 148 948 139 HOH HOH . I 6 HOH A 149 949 136 HOH HOH . I 6 HOH A 150 950 48 HOH HOH . I 6 HOH A 151 951 203 HOH HOH . I 6 HOH A 152 952 97 HOH HOH . I 6 HOH A 153 953 37 HOH HOH . I 6 HOH A 154 954 43 HOH HOH . I 6 HOH A 155 955 167 HOH HOH . I 6 HOH A 156 956 176 HOH HOH . I 6 HOH A 157 957 12 HOH HOH . I 6 HOH A 158 958 182 HOH HOH . I 6 HOH A 159 959 173 HOH HOH . I 6 HOH A 160 960 138 HOH HOH . I 6 HOH A 161 961 26 HOH HOH . I 6 HOH A 162 962 121 HOH HOH . I 6 HOH A 163 963 71 HOH HOH . I 6 HOH A 164 964 146 HOH HOH . I 6 HOH A 165 965 120 HOH HOH . I 6 HOH A 166 966 117 HOH HOH . I 6 HOH A 167 967 132 HOH HOH . I 6 HOH A 168 968 153 HOH HOH . I 6 HOH A 169 969 194 HOH HOH . I 6 HOH A 170 970 142 HOH HOH . I 6 HOH A 171 971 204 HOH HOH . I 6 HOH A 172 972 9 HOH HOH . I 6 HOH A 173 973 13 HOH HOH . I 6 HOH A 174 974 168 HOH HOH . I 6 HOH A 175 975 193 HOH HOH . I 6 HOH A 176 976 113 HOH HOH . I 6 HOH A 177 977 147 HOH HOH . I 6 HOH A 178 978 90 HOH HOH . I 6 HOH A 179 979 211 HOH HOH . I 6 HOH A 180 980 33 HOH HOH . I 6 HOH A 181 981 220 HOH HOH . I 6 HOH A 182 982 17 HOH HOH . I 6 HOH A 183 983 221 HOH HOH . I 6 HOH A 184 984 11 HOH HOH . I 6 HOH A 185 985 5 HOH HOH . I 6 HOH A 186 986 8 HOH HOH . I 6 HOH A 187 987 34 HOH HOH . I 6 HOH A 188 988 213 HOH HOH . I 6 HOH A 189 989 29 HOH HOH . I 6 HOH A 190 990 4 HOH HOH . I 6 HOH A 191 991 1 HOH HOH . I 6 HOH A 192 992 15 HOH HOH . I 6 HOH A 193 993 27 HOH HOH . I 6 HOH A 194 994 10 HOH HOH . I 6 HOH A 195 995 208 HOH HOH . I 6 HOH A 196 996 212 HOH HOH . I 6 HOH A 197 997 7 HOH HOH . I 6 HOH A 198 998 206 HOH HOH . I 6 HOH A 199 999 35 HOH HOH . I 6 HOH A 200 1000 181 HOH HOH . I 6 HOH A 201 1001 215 HOH HOH . I 6 HOH A 202 1002 209 HOH HOH . I 6 HOH A 203 1003 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 42.498 -12.309 20.212 1 49.54 ? C1 GOL 706 A 1 HETATM 2 O O1 GOL . . . G 5 41.635 -12.269 19.091 1 53.46 ? O1 GOL 706 A 1 HETATM 3 C C2 GOL . . . G 5 43.714 -13.184 19.91 1 51.02 ? C2 GOL 706 A 1 HETATM 4 O O2 GOL . . . G 5 44.658 -13.069 20.948 1 59.83 ? O2 GOL 706 A 1 HETATM 5 C C3 GOL . . . G 5 43.316 -14.649 19.781 1 44.58 ? C3 GOL 706 A 1 HETATM 6 O O3 GOL . . . G 5 43.853 -15.194 18.592 1 38.61 ? O3 GOL 706 A 1 HETATM 7 H H11 GOL . . . G 5 41.963 -12.71 21.073 1 59.48 ? H11 GOL 706 A 1 HETATM 8 H H12 GOL . . . G 5 42.826 -11.299 20.458 1 59.48 ? H12 GOL 706 A 1 HETATM 9 H HO1 GOL . . . G 5 40.828 -11.761 19.317 1 64.17 ? HO1 GOL 706 A 1 HETATM 10 H H2 GOL . . . G 5 44.156 -12.857 18.969 1 61.24 ? H2 GOL 706 A 1 HETATM 11 H HO2 GOL . . . G 5 44.265 -13.395 21.784 1 71.82 ? HO2 GOL 706 A 1 HETATM 12 H H31 GOL . . . G 5 42.229 -14.734 19.765 1 53.52 ? H31 GOL 706 A 1 HETATM 13 H H32 GOL . . . G 5 43.687 -15.207 20.64 1 53.52 ? H32 GOL 706 A 1 HETATM 14 H HO3 GOL . . . G 5 43.343 -14.865 17.822 1 46.35 ? HO3 GOL 706 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #