data_6BLE # _model_server_result.job_id btNl_jBltrWxvZxEemkGXQ _model_server_result.datetime_utc '2024-11-24 11:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ble # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6BLE # _exptl.entry_id 6BLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-[5-(2-methoxyethoxy)-1H-benzimidazol-1-yl]quinolin-8-yl}piperidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BLE _cell.length_a 48.998 _cell.length_b 77.681 _cell.length_c 78.064 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 N5 O2' _chem_comp.formula_weight 417.503 _chem_comp.id 34U _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-[5-(2-methoxyethoxy)-1H-benzimidazol-1-yl]quinolin-8-yl}piperidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 34U sing 1 n n O02 C03 34U sing 2 n n C03 C04 34U sing 3 n n C04 O05 34U sing 4 n n O05 C06 34U sing 5 n n C07 C06 34U doub 6 n y C07 C08 34U sing 7 n y C06 C11 34U sing 8 n y N14 C08 34U sing 9 n y N14 C13 34U doub 10 n y C08 C09 34U doub 11 n y C13 N12 34U sing 12 n y C11 C10 34U doub 13 n y C09 N12 34U sing 14 n y C09 C10 34U sing 15 n y N12 C15 34U sing 16 n n N29 C26 34U sing 17 n n C25 C26 34U sing 18 n n C25 C24 34U sing 19 n n C15 C31 34U doub 20 n y C15 N16 34U sing 21 n y C31 C30 34U sing 22 n y C26 C27 34U sing 23 n n C24 N23 34U sing 24 n n N16 C17 34U doub 25 n y C30 C18 34U doub 26 n y N23 C22 34U sing 27 n n N23 C28 34U sing 28 n n C27 C28 34U sing 29 n n C17 C18 34U sing 30 n y C17 C22 34U sing 31 n y C18 C19 34U sing 32 n y C22 C21 34U doub 33 n y C19 C20 34U doub 34 n y C21 C20 34U sing 35 n y C01 H1 34U sing 36 n n C01 H2 34U sing 37 n n C01 H3 34U sing 38 n n C03 H4 34U sing 39 n n C03 H5 34U sing 40 n n C04 H6 34U sing 41 n n C04 H7 34U sing 42 n n C07 H8 34U sing 43 n n C10 H9 34U sing 44 n n C11 H10 34U sing 45 n n C13 H11 34U sing 46 n n C19 H12 34U sing 47 n n C20 H13 34U sing 48 n n C21 H14 34U sing 49 n n C24 H15 34U sing 50 n n C24 H16 34U sing 51 n n C25 H17 34U sing 52 n n C25 H18 34U sing 53 n n C26 H19 34U sing 54 n n C27 H20 34U sing 55 n n C27 H21 34U sing 56 n n C28 H22 34U sing 57 n n C28 H23 34U sing 58 n n N29 H24 34U sing 59 n n N29 H25 34U sing 60 n n C30 H27 34U sing 61 n n C31 H28 34U sing 62 n n # _atom_sites.entry_id 6BLE _atom_sites.fract_transf_matrix[1][1] 0.020409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 34U A 1 501 1 34U DRG . C 3 GOL A 1 502 1 GOL GOL . D 4 HOH A 1 601 40 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 41 HOH HOH . D 4 HOH A 4 604 61 HOH HOH . D 4 HOH A 5 605 59 HOH HOH . D 4 HOH A 6 606 39 HOH HOH . D 4 HOH A 7 607 75 HOH HOH . D 4 HOH A 8 608 17 HOH HOH . D 4 HOH A 9 609 50 HOH HOH . D 4 HOH A 10 610 14 HOH HOH . D 4 HOH A 11 611 46 HOH HOH . D 4 HOH A 12 612 19 HOH HOH . D 4 HOH A 13 613 32 HOH HOH . D 4 HOH A 14 614 48 HOH HOH . D 4 HOH A 15 615 45 HOH HOH . D 4 HOH A 16 616 38 HOH HOH . D 4 HOH A 17 617 87 HOH HOH . D 4 HOH A 18 618 90 HOH HOH . D 4 HOH A 19 619 62 HOH HOH . D 4 HOH A 20 620 82 HOH HOH . D 4 HOH A 21 621 22 HOH HOH . D 4 HOH A 22 622 7 HOH HOH . D 4 HOH A 23 623 54 HOH HOH . D 4 HOH A 24 624 47 HOH HOH . D 4 HOH A 25 625 78 HOH HOH . D 4 HOH A 26 626 20 HOH HOH . D 4 HOH A 27 627 84 HOH HOH . D 4 HOH A 28 628 88 HOH HOH . D 4 HOH A 29 629 74 HOH HOH . D 4 HOH A 30 630 13 HOH HOH . D 4 HOH A 31 631 81 HOH HOH . D 4 HOH A 32 632 27 HOH HOH . D 4 HOH A 33 633 3 HOH HOH . D 4 HOH A 34 634 60 HOH HOH . D 4 HOH A 35 635 25 HOH HOH . D 4 HOH A 36 636 12 HOH HOH . D 4 HOH A 37 637 10 HOH HOH . D 4 HOH A 38 638 69 HOH HOH . D 4 HOH A 39 639 51 HOH HOH . D 4 HOH A 40 640 9 HOH HOH . D 4 HOH A 41 641 71 HOH HOH . D 4 HOH A 42 642 42 HOH HOH . D 4 HOH A 43 643 33 HOH HOH . D 4 HOH A 44 644 16 HOH HOH . D 4 HOH A 45 645 11 HOH HOH . D 4 HOH A 46 646 21 HOH HOH . D 4 HOH A 47 647 18 HOH HOH . D 4 HOH A 48 648 29 HOH HOH . D 4 HOH A 49 649 77 HOH HOH . D 4 HOH A 50 650 49 HOH HOH . D 4 HOH A 51 651 89 HOH HOH . D 4 HOH A 52 652 58 HOH HOH . D 4 HOH A 53 653 55 HOH HOH . D 4 HOH A 54 654 4 HOH HOH . D 4 HOH A 55 655 35 HOH HOH . D 4 HOH A 56 656 26 HOH HOH . D 4 HOH A 57 657 37 HOH HOH . D 4 HOH A 58 658 68 HOH HOH . D 4 HOH A 59 659 15 HOH HOH . D 4 HOH A 60 660 57 HOH HOH . D 4 HOH A 61 661 56 HOH HOH . D 4 HOH A 62 662 86 HOH HOH . D 4 HOH A 63 663 63 HOH HOH . D 4 HOH A 64 664 6 HOH HOH . D 4 HOH A 65 665 65 HOH HOH . D 4 HOH A 66 666 30 HOH HOH . D 4 HOH A 67 667 64 HOH HOH . D 4 HOH A 68 668 44 HOH HOH . D 4 HOH A 69 669 53 HOH HOH . D 4 HOH A 70 670 34 HOH HOH . D 4 HOH A 71 671 80 HOH HOH . D 4 HOH A 72 672 76 HOH HOH . D 4 HOH A 73 673 28 HOH HOH . D 4 HOH A 74 674 36 HOH HOH . D 4 HOH A 75 675 52 HOH HOH . D 4 HOH A 76 676 73 HOH HOH . D 4 HOH A 77 677 1 HOH HOH . D 4 HOH A 78 678 79 HOH HOH . D 4 HOH A 79 679 23 HOH HOH . D 4 HOH A 80 680 43 HOH HOH . D 4 HOH A 81 681 31 HOH HOH . D 4 HOH A 82 682 70 HOH HOH . D 4 HOH A 83 683 72 HOH HOH . D 4 HOH A 84 684 83 HOH HOH . D 4 HOH A 85 685 85 HOH HOH . D 4 HOH A 86 686 24 HOH HOH . D 4 HOH A 87 687 5 HOH HOH . D 4 HOH A 88 688 66 HOH HOH . D 4 HOH A 89 689 8 HOH HOH . D 4 HOH A 90 690 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 34U . . . B 2 2.782 -3.415 22.822 1 44.39 ? C01 34U 501 A 1 HETATM 2 O O02 34U . . . B 2 1.96 -2.279 23.054 1 41.19 ? O02 34U 501 A 1 HETATM 3 C C03 34U . . . B 2 0.742 -2.563 23.693 1 36.55 ? C03 34U 501 A 1 HETATM 4 C C04 34U . . . B 2 -0.177 -1.399 23.556 1 34.2 ? C04 34U 501 A 1 HETATM 5 O O05 34U . . . B 2 0.54 -0.198 23.882 1 31.47 ? O05 34U 501 A 1 HETATM 6 C C06 34U . . . B 2 -0.142 0.993 23.884 1 29.35 ? C06 34U 501 A 1 HETATM 7 C C07 34U . . . B 2 -1.44 1.079 23.422 1 29.22 ? C07 34U 501 A 1 HETATM 8 C C08 34U . . . B 2 -2.072 2.319 23.46 1 27.41 ? C08 34U 501 A 1 HETATM 9 C C09 34U . . . B 2 -1.4 3.437 23.944 1 27.25 ? C09 34U 501 A 1 HETATM 10 C C10 34U . . . B 2 -0.088 3.365 24.396 1 29.48 ? C10 34U 501 A 1 HETATM 11 C C11 34U . . . B 2 0.532 2.133 24.365 1 31.34 ? C11 34U 501 A 1 HETATM 12 N N12 34U . . . B 2 -2.307 4.485 23.822 1 27.96 ? N12 34U 501 A 1 HETATM 13 C C13 34U . . . B 2 -3.473 3.949 23.325 1 29.92 ? C13 34U 501 A 1 HETATM 14 N N14 34U . . . B 2 -3.356 2.667 23.076 1 28.16 ? N14 34U 501 A 1 HETATM 15 C C15 34U . . . B 2 -2.121 5.842 24.231 1 30.01 ? C15 34U 501 A 1 HETATM 16 N N16 34U . . . B 2 -0.88 6.269 24.366 1 28.77 ? N16 34U 501 A 1 HETATM 17 C C17 34U . . . B 2 -0.629 7.536 24.832 1 29.23 ? C17 34U 501 A 1 HETATM 18 C C18 34U . . . B 2 -1.704 8.398 25.151 1 29.84 ? C18 34U 501 A 1 HETATM 19 C C19 34U . . . B 2 -1.451 9.701 25.629 1 31.12 ? C19 34U 501 A 1 HETATM 20 C C20 34U . . . B 2 -0.174 10.126 25.825 1 30.79 ? C20 34U 501 A 1 HETATM 21 C C21 34U . . . B 2 0.911 9.299 25.492 1 30.3 ? C21 34U 501 A 1 HETATM 22 C C22 34U . . . B 2 0.708 8.001 25.019 1 28.22 ? C22 34U 501 A 1 HETATM 23 N N23 34U . . . B 2 1.831 7.256 24.616 1 27.25 ? N23 34U 501 A 1 HETATM 24 C C24 34U . . . B 2 1.895 6.731 23.238 1 27.75 ? C24 34U 501 A 1 HETATM 25 C C25 34U . . . B 2 2.873 5.61 23.046 1 28.88 ? C25 34U 501 A 1 HETATM 26 C C26 34U . . . B 2 4.232 6.028 23.54 1 29.48 ? C26 34U 501 A 1 HETATM 27 C C27 34U . . . B 2 4.148 6.304 25.022 1 29.38 ? C27 34U 501 A 1 HETATM 28 C C28 34U . . . B 2 3.117 7.368 25.341 1 28.05 ? C28 34U 501 A 1 HETATM 29 N N29 34U . . . B 2 5.216 4.978 23.218 1 29.35 ? N29 34U 501 A 1 HETATM 30 C C30 34U . . . B 2 -3.014 7.916 24.985 1 31.04 ? C30 34U 501 A 1 HETATM 31 C C31 34U . . . B 2 -3.225 6.658 24.513 1 29.6 ? C31 34U 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #