data_6BLX # _model_server_result.job_id sgcJRePFkF38FWw5LlAibA _model_server_result.datetime_utc '2024-11-17 08:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6blx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 6BLX # _exptl.entry_id 6BLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.36 _cell.angle_gamma 90 _cell.entry_id 6BLX _cell.length_a 39.347 _cell.length_b 112.626 _cell.length_c 62.176 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 H N N ? 5 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 4 NAG 3 n C NAG 2 C 2 NAG E 5 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 109 A CYS 109 1_555 A SG CYS 165 A CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 40 B CYS 16 1_555 B SG CYS 102 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 141 B CYS 117 1_555 B SG CYS 197 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 D C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 120 A ASN 120 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6BLX _atom_sites.fract_transf_matrix[1][1] 0.025415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007945 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 201 3 NAG NAG . E 5 EDO A 1 204 1 EDO EDO . F 5 EDO A 1 205 2 EDO EDO . G 6 FMT A 1 206 2 FMT FMT . H 5 EDO B 1 201 3 EDO EDO . I 5 EDO B 1 202 4 EDO EDO . J 7 HOH A 1 301 138 HOH HOH . J 7 HOH A 2 302 51 HOH HOH . J 7 HOH A 3 303 109 HOH HOH . J 7 HOH A 4 304 6 HOH HOH . J 7 HOH A 5 305 16 HOH HOH . J 7 HOH A 6 306 212 HOH HOH . J 7 HOH A 7 307 85 HOH HOH . J 7 HOH A 8 308 124 HOH HOH . J 7 HOH A 9 309 41 HOH HOH . J 7 HOH A 10 310 58 HOH HOH . J 7 HOH A 11 311 4 HOH HOH . J 7 HOH A 12 312 79 HOH HOH . J 7 HOH A 13 313 202 HOH HOH . J 7 HOH A 14 314 249 HOH HOH . J 7 HOH A 15 315 47 HOH HOH . J 7 HOH A 16 316 73 HOH HOH . J 7 HOH A 17 317 284 HOH HOH . J 7 HOH A 18 318 11 HOH HOH . J 7 HOH A 19 319 22 HOH HOH . J 7 HOH A 20 320 12 HOH HOH . J 7 HOH A 21 321 36 HOH HOH . J 7 HOH A 22 322 224 HOH HOH . J 7 HOH A 23 323 24 HOH HOH . J 7 HOH A 24 324 189 HOH HOH . J 7 HOH A 25 325 8 HOH HOH . J 7 HOH A 26 326 7 HOH HOH . J 7 HOH A 27 327 140 HOH HOH . J 7 HOH A 28 328 35 HOH HOH . J 7 HOH A 29 329 232 HOH HOH . J 7 HOH A 30 330 39 HOH HOH . J 7 HOH A 31 331 280 HOH HOH . J 7 HOH A 32 332 42 HOH HOH . J 7 HOH A 33 333 72 HOH HOH . J 7 HOH A 34 334 117 HOH HOH . J 7 HOH A 35 335 15 HOH HOH . J 7 HOH A 36 336 149 HOH HOH . J 7 HOH A 37 337 10 HOH HOH . J 7 HOH A 38 338 102 HOH HOH . J 7 HOH A 39 339 279 HOH HOH . J 7 HOH A 40 340 176 HOH HOH . J 7 HOH A 41 341 33 HOH HOH . J 7 HOH A 42 342 61 HOH HOH . J 7 HOH A 43 343 83 HOH HOH . J 7 HOH A 44 344 37 HOH HOH . J 7 HOH A 45 345 27 HOH HOH . J 7 HOH A 46 346 1 HOH HOH . J 7 HOH A 47 347 64 HOH HOH . J 7 HOH A 48 348 192 HOH HOH . J 7 HOH A 49 349 185 HOH HOH . J 7 HOH A 50 350 28 HOH HOH . J 7 HOH A 51 351 285 HOH HOH . J 7 HOH A 52 352 123 HOH HOH . J 7 HOH A 53 353 71 HOH HOH . J 7 HOH A 54 354 20 HOH HOH . J 7 HOH A 55 355 274 HOH HOH . J 7 HOH A 56 356 3 HOH HOH . J 7 HOH A 57 357 248 HOH HOH . J 7 HOH A 58 358 196 HOH HOH . J 7 HOH A 59 359 206 HOH HOH . J 7 HOH A 60 360 245 HOH HOH . J 7 HOH A 61 361 281 HOH HOH . J 7 HOH A 62 362 88 HOH HOH . J 7 HOH A 63 363 145 HOH HOH . J 7 HOH A 64 364 69 HOH HOH . J 7 HOH A 65 365 207 HOH HOH . J 7 HOH A 66 366 211 HOH HOH . J 7 HOH A 67 367 164 HOH HOH . J 7 HOH A 68 368 121 HOH HOH . J 7 HOH A 69 369 252 HOH HOH . J 7 HOH A 70 370 105 HOH HOH . J 7 HOH A 71 371 203 HOH HOH . J 7 HOH A 72 372 115 HOH HOH . J 7 HOH A 73 373 139 HOH HOH . J 7 HOH A 74 374 17 HOH HOH . J 7 HOH A 75 375 238 HOH HOH . J 7 HOH A 76 376 259 HOH HOH . J 7 HOH A 77 377 38 HOH HOH . J 7 HOH A 78 378 277 HOH HOH . J 7 HOH A 79 379 247 HOH HOH . J 7 HOH A 80 380 13 HOH HOH . J 7 HOH A 81 381 217 HOH HOH . J 7 HOH A 82 382 187 HOH HOH . J 7 HOH A 83 383 53 HOH HOH . J 7 HOH A 84 384 199 HOH HOH . J 7 HOH A 85 385 118 HOH HOH . J 7 HOH A 86 386 271 HOH HOH . J 7 HOH A 87 387 29 HOH HOH . J 7 HOH A 88 388 76 HOH HOH . J 7 HOH A 89 389 57 HOH HOH . J 7 HOH A 90 390 275 HOH HOH . J 7 HOH A 91 391 251 HOH HOH . J 7 HOH A 92 392 172 HOH HOH . J 7 HOH A 93 393 204 HOH HOH . J 7 HOH A 94 394 122 HOH HOH . J 7 HOH A 95 395 9 HOH HOH . J 7 HOH A 96 396 177 HOH HOH . J 7 HOH A 97 397 107 HOH HOH . J 7 HOH A 98 398 227 HOH HOH . J 7 HOH A 99 399 175 HOH HOH . J 7 HOH A 100 400 267 HOH HOH . J 7 HOH A 101 401 278 HOH HOH . J 7 HOH A 102 402 221 HOH HOH . J 7 HOH A 103 403 68 HOH HOH . J 7 HOH A 104 404 250 HOH HOH . J 7 HOH A 105 405 230 HOH HOH . J 7 HOH A 106 406 90 HOH HOH . J 7 HOH A 107 407 282 HOH HOH . J 7 HOH A 108 408 136 HOH HOH . J 7 HOH A 109 409 266 HOH HOH . J 7 HOH A 110 410 229 HOH HOH . J 7 HOH A 111 411 268 HOH HOH . J 7 HOH A 112 412 129 HOH HOH . J 7 HOH A 113 413 228 HOH HOH . J 7 HOH A 114 414 220 HOH HOH . J 7 HOH A 115 415 258 HOH HOH . J 7 HOH A 116 416 256 HOH HOH . J 7 HOH A 117 417 156 HOH HOH . J 7 HOH A 118 418 240 HOH HOH . J 7 HOH A 119 419 182 HOH HOH . J 7 HOH A 120 420 244 HOH HOH . J 7 HOH A 121 421 265 HOH HOH . J 7 HOH A 122 422 166 HOH HOH . J 7 HOH A 123 423 151 HOH HOH . K 7 HOH B 1 301 18 HOH HOH . K 7 HOH B 2 302 276 HOH HOH . K 7 HOH B 3 303 74 HOH HOH . K 7 HOH B 4 304 21 HOH HOH . K 7 HOH B 5 305 130 HOH HOH . K 7 HOH B 6 306 178 HOH HOH . K 7 HOH B 7 307 261 HOH HOH . K 7 HOH B 8 308 60 HOH HOH . K 7 HOH B 9 309 288 HOH HOH . K 7 HOH B 10 310 40 HOH HOH . K 7 HOH B 11 311 254 HOH HOH . K 7 HOH B 12 312 82 HOH HOH . K 7 HOH B 13 313 91 HOH HOH . K 7 HOH B 14 314 95 HOH HOH . K 7 HOH B 15 315 14 HOH HOH . K 7 HOH B 16 316 46 HOH HOH . K 7 HOH B 17 317 89 HOH HOH . K 7 HOH B 18 318 104 HOH HOH . K 7 HOH B 19 319 86 HOH HOH . K 7 HOH B 20 320 162 HOH HOH . K 7 HOH B 21 321 272 HOH HOH . K 7 HOH B 22 322 19 HOH HOH . K 7 HOH B 23 323 144 HOH HOH . K 7 HOH B 24 324 65 HOH HOH . K 7 HOH B 25 325 66 HOH HOH . K 7 HOH B 26 326 180 HOH HOH . K 7 HOH B 27 327 147 HOH HOH . K 7 HOH B 28 328 146 HOH HOH . K 7 HOH B 29 329 2 HOH HOH . K 7 HOH B 30 330 44 HOH HOH . K 7 HOH B 31 331 80 HOH HOH . K 7 HOH B 32 332 219 HOH HOH . K 7 HOH B 33 333 152 HOH HOH . K 7 HOH B 34 334 49 HOH HOH . K 7 HOH B 35 335 154 HOH HOH . K 7 HOH B 36 336 87 HOH HOH . K 7 HOH B 37 337 170 HOH HOH . K 7 HOH B 38 338 169 HOH HOH . K 7 HOH B 39 339 191 HOH HOH . K 7 HOH B 40 340 241 HOH HOH . K 7 HOH B 41 341 111 HOH HOH . K 7 HOH B 42 342 34 HOH HOH . K 7 HOH B 43 343 98 HOH HOH . K 7 HOH B 44 344 132 HOH HOH . K 7 HOH B 45 345 101 HOH HOH . K 7 HOH B 46 346 209 HOH HOH . K 7 HOH B 47 347 134 HOH HOH . K 7 HOH B 48 348 52 HOH HOH . K 7 HOH B 49 349 235 HOH HOH . K 7 HOH B 50 350 99 HOH HOH . K 7 HOH B 51 351 201 HOH HOH . K 7 HOH B 52 352 173 HOH HOH . K 7 HOH B 53 353 269 HOH HOH . K 7 HOH B 54 354 225 HOH HOH . K 7 HOH B 55 355 50 HOH HOH . K 7 HOH B 56 356 179 HOH HOH . K 7 HOH B 57 357 93 HOH HOH . K 7 HOH B 58 358 94 HOH HOH . K 7 HOH B 59 359 56 HOH HOH . K 7 HOH B 60 360 120 HOH HOH . K 7 HOH B 61 361 113 HOH HOH . K 7 HOH B 62 362 143 HOH HOH . K 7 HOH B 63 363 264 HOH HOH . K 7 HOH B 64 364 43 HOH HOH . K 7 HOH B 65 365 226 HOH HOH . K 7 HOH B 66 366 159 HOH HOH . K 7 HOH B 67 367 205 HOH HOH . K 7 HOH B 68 368 23 HOH HOH . K 7 HOH B 69 369 32 HOH HOH . K 7 HOH B 70 370 193 HOH HOH . K 7 HOH B 71 371 167 HOH HOH . K 7 HOH B 72 372 287 HOH HOH . K 7 HOH B 73 373 108 HOH HOH . K 7 HOH B 74 374 236 HOH HOH . K 7 HOH B 75 375 116 HOH HOH . K 7 HOH B 76 376 263 HOH HOH . K 7 HOH B 77 377 142 HOH HOH . K 7 HOH B 78 378 78 HOH HOH . K 7 HOH B 79 379 133 HOH HOH . K 7 HOH B 80 380 81 HOH HOH . K 7 HOH B 81 381 48 HOH HOH . K 7 HOH B 82 382 188 HOH HOH . K 7 HOH B 83 383 54 HOH HOH . K 7 HOH B 84 384 55 HOH HOH . K 7 HOH B 85 385 171 HOH HOH . K 7 HOH B 86 386 168 HOH HOH . K 7 HOH B 87 387 96 HOH HOH . K 7 HOH B 88 388 273 HOH HOH . K 7 HOH B 89 389 158 HOH HOH . K 7 HOH B 90 390 160 HOH HOH . K 7 HOH B 91 391 270 HOH HOH . K 7 HOH B 92 392 186 HOH HOH . K 7 HOH B 93 393 174 HOH HOH . K 7 HOH B 94 394 131 HOH HOH . K 7 HOH B 95 395 234 HOH HOH . K 7 HOH B 96 396 119 HOH HOH . K 7 HOH B 97 397 233 HOH HOH . K 7 HOH B 98 398 200 HOH HOH . K 7 HOH B 99 399 242 HOH HOH . K 7 HOH B 100 400 283 HOH HOH . K 7 HOH B 101 401 67 HOH HOH . K 7 HOH B 102 402 216 HOH HOH . K 7 HOH B 103 403 126 HOH HOH . K 7 HOH B 104 404 127 HOH HOH . K 7 HOH B 105 405 213 HOH HOH . K 7 HOH B 106 406 181 HOH HOH . K 7 HOH B 107 407 208 HOH HOH . K 7 HOH B 108 408 135 HOH HOH . K 7 HOH B 109 409 286 HOH HOH . K 7 HOH B 110 410 31 HOH HOH . K 7 HOH B 111 411 137 HOH HOH . K 7 HOH B 112 412 148 HOH HOH . K 7 HOH B 113 413 214 HOH HOH . K 7 HOH B 114 414 210 HOH HOH . K 7 HOH B 115 415 155 HOH HOH . K 7 HOH B 116 416 100 HOH HOH . K 7 HOH B 117 417 165 HOH HOH . K 7 HOH B 118 418 141 HOH HOH . K 7 HOH B 119 419 161 HOH HOH . K 7 HOH B 120 420 255 HOH HOH . K 7 HOH B 121 421 163 HOH HOH . K 7 HOH B 122 422 289 HOH HOH . K 7 HOH B 123 423 150 HOH HOH . K 7 HOH B 124 424 62 HOH HOH . K 7 HOH B 125 425 237 HOH HOH . K 7 HOH B 126 426 103 HOH HOH . K 7 HOH B 127 427 190 HOH HOH . K 7 HOH B 128 428 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 5 -24.296 17.342 84.899 1 45.31 ? C1 EDO 205 A 1 HETATM 2 O O1 EDO . . . F 5 -22.902 17.547 85.188 1 54.73 ? O1 EDO 205 A 1 HETATM 3 C C2 EDO . . . F 5 -24.459 16.359 83.74 1 43.35 ? C2 EDO 205 A 1 HETATM 4 O O2 EDO . . . F 5 -23.95 16.922 82.513 1 43.67 ? O2 EDO 205 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #