data_6BM7 # _model_server_result.job_id 9cCPLLBMOqcIeURvmZam9g _model_server_result.datetime_utc '2024-10-15 16:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 6BM7 # _exptl.entry_id 6BM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.426 _cell.angle_gamma 90 _cell.entry_id 6BM7 _cell.length_a 81.09 _cell.length_b 96.25 _cell.length_c 98.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,N,O,P,Q,T 1 1 C,D,E,I,J,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 B PYR 86 1_555 B N SER 2 B SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C PYR 1 D PYR 86 1_555 D N SER 2 D SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 6BM7 _atom_sites.fract_transf_matrix[1][1] 0.012332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 B3P B 1 401 1 B3P B3P . H 5 DY7 B 1 402 4 DY7 56H . I 4 B3P D 1 401 2 B3P B3P . J 5 DY7 D 1 402 3 DY7 56H . K 6 PUT E 1 401 3 PUT PUT . L 7 PGE E 1 402 1 PGE PGE . M 7 PGE E 1 403 2 PGE PGE . N 6 PUT F 1 401 4 PUT PUT . O 8 PG4 F 1 402 3 PG4 PG4 . P 9 HOH A 1 101 14 HOH HOH . Q 9 HOH B 1 501 2 HOH HOH . R 9 HOH C 1 101 4 HOH HOH . S 9 HOH D 1 501 8 HOH HOH . S 9 HOH D 2 502 5 HOH HOH . T 9 HOH F 1 501 13 HOH HOH . T 9 HOH F 2 502 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . G 4 11.38 29.005 65.192 1 51.29 ? C1 B3P 401 B 1 HETATM 2 C C2 B3P . . . G 4 11.517 27.662 65.84 1 46.3 ? C2 B3P 401 B 1 HETATM 3 C C3 B3P . . . G 4 11.76 28.9 63.747 1 49.6 ? C3 B3P 401 B 1 HETATM 4 N N1 B3P . . . G 4 12.661 30.036 63.398 1 39.57 ? N1 B3P 401 B 1 HETATM 5 C C4 B3P . . . G 4 12.897 30.153 61.932 1 35.39 ? C4 B3P 401 B 1 HETATM 6 C C5 B3P . . . G 4 13.904 31.253 61.638 1 45.96 ? C5 B3P 401 B 1 HETATM 7 C C6 B3P . . . G 4 13.378 28.821 61.284 1 46.59 ? C6 B3P 401 B 1 HETATM 8 C C7 B3P . . . G 4 11.556 30.594 61.197 1 42.03 ? C7 B3P 401 B 1 HETATM 9 N N2 B3P . . . G 4 11.243 27.803 67.297 1 53.41 ? N2 B3P 401 B 1 HETATM 10 C C8 B3P . . . G 4 10.621 26.582 67.881 1 58.98 ? C8 B3P 401 B 1 HETATM 11 C C9 B3P . . . G 4 9.166 26.349 67.428 1 54.85 ? C9 B3P 401 B 1 HETATM 12 C C10 B3P . . . G 4 10.65 26.664 69.441 1 67.7 ? C10 B3P 401 B 1 HETATM 13 C C11 B3P . . . G 4 11.485 25.299 67.451 1 57.83 ? C11 B3P 401 B 1 HETATM 14 O O1 B3P . . . G 4 8.367 27.221 68.124 1 52.22 ? O1 B3P 401 B 1 HETATM 15 O O2 B3P . . . G 4 10.259 27.941 69.783 1 72.58 ? O2 B3P 401 B 1 HETATM 16 O O3 B3P . . . G 4 10.836 24.678 66.403 1 49.59 ? O3 B3P 401 B 1 HETATM 17 O O4 B3P . . . G 4 13.399 32.411 62.188 1 51.14 ? O4 B3P 401 B 1 HETATM 18 O O5 B3P . . . G 4 14.564 28.501 61.87 1 50.65 ? O5 B3P 401 B 1 HETATM 19 O O6 B3P . . . G 4 11.001 31.625 61.927 1 55.07 ? O6 B3P 401 B 1 HETATM 20 H H11 B3P . . . G 4 11.94 29.657 65.642 1 61.55 ? H11 B3P 401 B 1 HETATM 21 H H12 B3P . . . G 4 10.46 29.303 65.261 1 61.55 ? H12 B3P 401 B 1 HETATM 22 H H21 B3P . . . G 4 12.413 27.306 65.734 1 55.57 ? H21 B3P 401 B 1 HETATM 23 H H22 B3P . . . G 4 10.944 26.995 65.43 1 55.57 ? H22 B3P 401 B 1 HETATM 24 H H31 B3P . . . G 4 12.234 28.073 63.565 1 59.52 ? H31 B3P 401 B 1 HETATM 25 H H32 B3P . . . G 4 10.986 28.865 63.164 1 59.52 ? H32 B3P 401 B 1 HETATM 26 H HN1 B3P . . . G 4 13.448 29.881 63.783 1 47.48 ? HN1 B3P 401 B 1 HETATM 27 H H51 B3P . . . G 4 14.023 31.287 60.676 1 55.16 ? H51 B3P 401 B 1 HETATM 28 H H52 B3P . . . G 4 14.753 30.978 62.018 1 55.16 ? H52 B3P 401 B 1 HETATM 29 H H61 B3P . . . G 4 13.449 28.965 60.327 1 55.91 ? H61 B3P 401 B 1 HETATM 30 H H62 B3P . . . G 4 12.693 28.145 61.402 1 55.91 ? H62 B3P 401 B 1 HETATM 31 H H71 B3P . . . G 4 11.73 30.812 60.268 1 50.43 ? H71 B3P 401 B 1 HETATM 32 H H72 B3P . . . G 4 10.972 29.82 61.21 1 50.43 ? H72 B3P 401 B 1 HETATM 33 H HN2 B3P . . . G 4 12.025 27.926 67.705 1 64.09 ? HN2 B3P 401 B 1 HETATM 34 H H91 B3P . . . G 4 9.143 26.47 66.466 1 65.82 ? H91 B3P 401 B 1 HETATM 35 H H92 B3P . . . G 4 8.959 25.416 67.595 1 65.82 ? H92 B3P 401 B 1 HETATM 36 H H101 B3P . . . G 4 11.537 26.433 69.756 1 81.24 ? H101 B3P 401 B 1 HETATM 37 H H102 B3P . . . G 4 10.058 25.977 69.785 1 81.24 ? H102 B3P 401 B 1 HETATM 38 H H111 B3P . . . G 4 11.506 24.715 68.225 1 69.4 ? H111 B3P 401 B 1 HETATM 39 H H112 B3P . . . G 4 12.401 25.553 67.256 1 69.4 ? H112 B3P 401 B 1 HETATM 40 H HO1 B3P . . . G 4 7.572 27.033 67.89 1 62.66 ? HO1 B3P 401 B 1 HETATM 41 H HO2 B3P . . . G 4 10.372 28.003 70.623 1 87.1 ? HO2 B3P 401 B 1 HETATM 42 H HO3 B3P . . . G 4 11.185 23.907 66.323 1 59.51 ? HO3 B3P 401 B 1 HETATM 43 H HO4 B3P . . . G 4 14.019 32.987 62.104 1 61.37 ? HO4 B3P 401 B 1 HETATM 44 H HO5 B3P . . . G 4 14.923 27.918 61.367 1 60.78 ? HO5 B3P 401 B 1 HETATM 45 H HO6 B3P . . . G 4 10.36 31.935 61.464 1 66.09 ? HO6 B3P 401 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #