data_6BM7 # _model_server_result.job_id -2tENDXIJwYi0Aw48T7c6g _model_server_result.datetime_utc '2024-10-15 16:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 6BM7 # _exptl.entry_id 6BM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.426 _cell.angle_gamma 90 _cell.entry_id 6BM7 _cell.length_a 81.09 _cell.length_b 96.25 _cell.length_c 98.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,N,O,P,Q,T 1 1 C,D,E,I,J,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 B PYR 86 1_555 B N SER 2 B SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C PYR 1 D PYR 86 1_555 D N SER 2 D SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 6BM7 _atom_sites.fract_transf_matrix[1][1] 0.012332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 B3P B 1 401 1 B3P B3P . H 5 DY7 B 1 402 4 DY7 56H . I 4 B3P D 1 401 2 B3P B3P . J 5 DY7 D 1 402 3 DY7 56H . K 6 PUT E 1 401 3 PUT PUT . L 7 PGE E 1 402 1 PGE PGE . M 7 PGE E 1 403 2 PGE PGE . N 6 PUT F 1 401 4 PUT PUT . O 8 PG4 F 1 402 3 PG4 PG4 . P 9 HOH A 1 101 14 HOH HOH . Q 9 HOH B 1 501 2 HOH HOH . R 9 HOH C 1 101 4 HOH HOH . S 9 HOH D 1 501 8 HOH HOH . S 9 HOH D 2 502 5 HOH HOH . T 9 HOH F 1 501 13 HOH HOH . T 9 HOH F 2 502 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . . . I 4 27.018 8.675 -6.918 1 59.97 ? C1 B3P 401 D 1 HETATM 2 C C2 B3P . . . I 4 26.406 8.588 -5.566 1 60.7 ? C2 B3P 401 D 1 HETATM 3 C C3 B3P . . . I 4 26.613 9.98 -7.502 1 67.88 ? C3 B3P 401 D 1 HETATM 4 N N1 B3P . . . I 4 26.943 10.012 -8.956 1 68.97 ? N1 B3P 401 D 1 HETATM 5 C C4 B3P . . . I 4 27.905 11.101 -9.28 1 82.48 ? C4 B3P 401 D 1 HETATM 6 C C5 B3P . . . I 4 28.298 11.071 -10.765 1 84.11 ? C5 B3P 401 D 1 HETATM 7 C C6 B3P . . . I 4 27.318 12.524 -8.944 1 69.84 ? C6 B3P 401 D 1 HETATM 8 C C7 B3P . . . I 4 29.268 10.881 -8.432 1 78.04 ? C7 B3P 401 D 1 HETATM 9 N N2 B3P . . . I 4 27.079 7.513 -4.782 1 60.29 ? N2 B3P 401 D 1 HETATM 10 C C8 B3P . . . I 4 26.507 7.386 -3.412 1 49.04 ? C8 B3P 401 D 1 HETATM 11 C C9 B3P . . . I 4 27.261 6.333 -2.62 1 49.51 ? C9 B3P 401 D 1 HETATM 12 C C10 B3P . . . I 4 24.978 7.018 -3.428 1 60.34 ? C10 B3P 401 D 1 HETATM 13 C C11 B3P . . . I 4 26.702 8.769 -2.616 1 58.88 ? C11 B3P 401 D 1 HETATM 14 O O1 B3P . . . I 4 27.324 5.211 -3.41 1 53.11 ? O1 B3P 401 D 1 HETATM 15 O O2 B3P . . . I 4 24.851 5.853 -4.159 1 60.19 ? O2 B3P 401 D 1 HETATM 16 O O3 B3P . . . I 4 28.02 9.167 -2.789 1 57.97 ? O3 B3P 401 D 1 HETATM 17 O O4 B3P . . . I 4 27.174 10.726 -11.481 1 80.64 ? O4 B3P 401 D 1 HETATM 18 O O5 B3P . . . I 4 26.229 12.703 -9.757 1 71.47 ? O5 B3P 401 D 1 HETATM 19 O O6 B3P . . . I 4 29.74 9.602 -8.69 1 62.62 ? O6 B3P 401 D 1 HETATM 20 H H11 B3P . . . I 4 26.723 7.941 -7.478 1 71.96 ? H11 B3P 401 D 1 HETATM 21 H H12 B3P . . . I 4 27.985 8.637 -6.842 1 71.96 ? H12 B3P 401 D 1 HETATM 22 H H21 B3P . . . I 4 25.462 8.372 -5.62 1 72.84 ? H21 B3P 401 D 1 HETATM 23 H H22 B3P . . . I 4 26.428 9.437 -5.098 1 72.84 ? H22 B3P 401 D 1 HETATM 24 H H31 B3P . . . I 4 25.658 10.125 -7.41 1 81.46 ? H31 B3P 401 D 1 HETATM 25 H H32 B3P . . . I 4 27.01 10.73 -7.032 1 81.46 ? H32 B3P 401 D 1 HETATM 26 H HN1 B3P . . . I 4 26.189 10.183 -9.397 1 82.76 ? HN1 B3P 401 D 1 HETATM 27 H H51 B3P . . . I 4 28.658 11.944 -10.986 1 100.93 ? H51 B3P 401 D 1 HETATM 28 H H52 B3P . . . I 4 29.027 10.438 -10.858 1 100.93 ? H52 B3P 401 D 1 HETATM 29 H H61 B3P . . . I 4 28.02 13.178 -9.092 1 83.81 ? H61 B3P 401 D 1 HETATM 30 H H62 B3P . . . I 4 27.109 12.568 -7.998 1 83.81 ? H62 B3P 401 D 1 HETATM 31 H H71 B3P . . . I 4 29.118 11.065 -7.491 1 93.65 ? H71 B3P 401 D 1 HETATM 32 H H72 B3P . . . I 4 29.899 11.542 -8.757 1 93.65 ? H72 B3P 401 D 1 HETATM 33 H HN2 B3P . . . I 4 26.934 6.743 -5.204 1 72.35 ? HN2 B3P 401 D 1 HETATM 34 H H91 B3P . . . I 4 26.787 6.207 -1.784 1 59.41 ? H91 B3P 401 D 1 HETATM 35 H H92 B3P . . . I 4 28.129 6.704 -2.398 1 59.41 ? H92 B3P 401 D 1 HETATM 36 H H101 B3P . . . I 4 24.66 6.939 -2.515 1 72.41 ? H101 B3P 401 D 1 HETATM 37 H H102 B3P . . . I 4 24.497 7.767 -3.813 1 72.41 ? H102 B3P 401 D 1 HETATM 38 H H111 B3P . . . I 4 26.53 8.571 -1.682 1 70.66 ? H111 B3P 401 D 1 HETATM 39 H H112 B3P . . . I 4 26.045 9.424 -2.9 1 70.66 ? H112 B3P 401 D 1 HETATM 40 H HO1 B3P . . . I 4 27.767 4.644 -2.959 1 63.73 ? HO1 B3P 401 D 1 HETATM 41 H HO2 B3P . . . I 4 24.044 5.604 -4.064 1 72.23 ? HO2 B3P 401 D 1 HETATM 42 H HO3 B3P . . . I 4 28.172 9.767 -2.207 1 69.57 ? HO3 B3P 401 D 1 HETATM 43 H HO4 B3P . . . I 4 27.436 10.652 -12.287 1 96.77 ? HO4 B3P 401 D 1 HETATM 44 H HO5 B3P . . . I 4 25.981 13.508 -9.643 1 85.77 ? HO5 B3P 401 D 1 HETATM 45 H HO6 B3P . . . I 4 30.561 9.596 -8.47 1 75.15 ? HO6 B3P 401 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #