data_6BM7 # _model_server_result.job_id SPF8_lPLRObCue-q9ADUVg _model_server_result.datetime_utc '2024-10-15 16:19:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 6BM7 # _exptl.entry_id 6BM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.426 _cell.angle_gamma 90 _cell.entry_id 6BM7 _cell.length_a 81.09 _cell.length_b 96.25 _cell.length_c 98.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,N,O,P,Q,T 1 1 C,D,E,I,J,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 B PYR 86 1_555 B N SER 2 B SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C PYR 1 D PYR 86 1_555 D N SER 2 D SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 403 n n N2 HN21 PUT sing 404 n n N2 HN22 PUT sing 405 n n C4 C3 PUT sing 406 n n C4 H41 PUT sing 407 n n C4 H42 PUT sing 408 n n C3 C2 PUT sing 409 n n C3 H31 PUT sing 410 n n C3 H32 PUT sing 411 n n C2 C1 PUT sing 412 n n C2 H21 PUT sing 413 n n C2 H22 PUT sing 414 n n C1 N1 PUT sing 415 n n C1 H11 PUT sing 416 n n C1 H12 PUT sing 417 n n N1 HN11 PUT sing 418 n n N1 HN12 PUT sing 419 n n # _atom_sites.entry_id 6BM7 _atom_sites.fract_transf_matrix[1][1] 0.012332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 B3P B 1 401 1 B3P B3P . H 5 DY7 B 1 402 4 DY7 56H . I 4 B3P D 1 401 2 B3P B3P . J 5 DY7 D 1 402 3 DY7 56H . K 6 PUT E 1 401 3 PUT PUT . L 7 PGE E 1 402 1 PGE PGE . M 7 PGE E 1 403 2 PGE PGE . N 6 PUT F 1 401 4 PUT PUT . O 8 PG4 F 1 402 3 PG4 PG4 . P 9 HOH A 1 101 14 HOH HOH . Q 9 HOH B 1 501 2 HOH HOH . R 9 HOH C 1 101 4 HOH HOH . S 9 HOH D 1 501 8 HOH HOH . S 9 HOH D 2 502 5 HOH HOH . T 9 HOH F 1 501 13 HOH HOH . T 9 HOH F 2 502 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . K 6 1.023 -14.887 2.811 1 47.79 ? N2 PUT 401 E 1 HETATM 2 C C4 PUT . . . K 6 1.221 -13.66 3.573 1 35.54 ? C4 PUT 401 E 1 HETATM 3 C C3 PUT . . . K 6 0.611 -12.491 2.803 1 40.02 ? C3 PUT 401 E 1 HETATM 4 C C2 PUT . . . K 6 -0.834 -12.825 2.436 1 40.72 ? C2 PUT 401 E 1 HETATM 5 C C1 PUT . . . K 6 -1.447 -11.688 1.622 1 40.54 ? C1 PUT 401 E 1 HETATM 6 N N1 PUT . . . K 6 -2.841 -12.015 1.331 1 38.99 ? N1 PUT 401 E 1 HETATM 7 H HN21 PUT . . . K 6 1.41 -14.86 2.01 1 57.34 ? HN21 PUT 401 E 1 HETATM 8 H HN22 PUT . . . K 6 1.3 -15.61 3.249 1 57.34 ? HN22 PUT 401 E 1 HETATM 9 H H41 PUT . . . K 6 0.861 -13.68 4.474 1 42.64 ? H41 PUT 401 E 1 HETATM 10 H H42 PUT . . . K 6 2.172 -13.517 3.702 1 42.64 ? H42 PUT 401 E 1 HETATM 11 H H31 PUT . . . K 6 1.131 -12.293 2.009 1 48.02 ? H31 PUT 401 E 1 HETATM 12 H H32 PUT . . . K 6 0.648 -11.676 3.328 1 48.02 ? H32 PUT 401 E 1 HETATM 13 H H21 PUT . . . K 6 -1.359 -12.995 3.234 1 48.86 ? H21 PUT 401 E 1 HETATM 14 H H22 PUT . . . K 6 -0.877 -13.658 1.941 1 48.86 ? H22 PUT 401 E 1 HETATM 15 H H11 PUT . . . K 6 -1.419 -10.858 2.122 1 48.65 ? H11 PUT 401 E 1 HETATM 16 H H12 PUT . . . K 6 -0.899 -11.513 0.841 1 48.65 ? H12 PUT 401 E 1 HETATM 17 H HN11 PUT . . . K 6 -2.924 -12.747 0.83 1 46.79 ? HN11 PUT 401 E 1 HETATM 18 H HN12 PUT . . . K 6 -3.28 -11.343 0.947 1 46.79 ? HN12 PUT 401 E 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #