data_6BM7 # _model_server_result.job_id tYRUrey1j_IUh0HMIaC01g _model_server_result.datetime_utc '2024-10-15 16:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 6BM7 # _exptl.entry_id 6BM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.426 _cell.angle_gamma 90 _cell.entry_id 6BM7 _cell.length_a 81.09 _cell.length_b 96.25 _cell.length_c 98.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,N,O,P,Q,T 1 1 C,D,E,I,J,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C PYR 1 B PYR 86 1_555 B N SER 2 B SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C PYR 1 D PYR 86 1_555 D N SER 2 D SER 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 310 n n O1 HO1 PG4 sing 311 n n C1 C2 PG4 sing 312 n n C1 H11 PG4 sing 313 n n C1 H12 PG4 sing 314 n n C2 O2 PG4 sing 315 n n C2 H21 PG4 sing 316 n n C2 H22 PG4 sing 317 n n O2 C3 PG4 sing 318 n n C3 C4 PG4 sing 319 n n C3 H31 PG4 sing 320 n n C3 H32 PG4 sing 321 n n C4 O3 PG4 sing 322 n n C4 H41 PG4 sing 323 n n C4 H42 PG4 sing 324 n n O3 C5 PG4 sing 325 n n C5 C6 PG4 sing 326 n n C5 H51 PG4 sing 327 n n C5 H52 PG4 sing 328 n n C6 O4 PG4 sing 329 n n C6 H61 PG4 sing 330 n n C6 H62 PG4 sing 331 n n O4 C7 PG4 sing 332 n n C7 C8 PG4 sing 333 n n C7 H71 PG4 sing 334 n n C7 H72 PG4 sing 335 n n C8 O5 PG4 sing 336 n n C8 H81 PG4 sing 337 n n C8 H82 PG4 sing 338 n n O5 HO5 PG4 sing 339 n n # _atom_sites.entry_id 6BM7 _atom_sites.fract_transf_matrix[1][1] 0.012332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01036 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 B3P B 1 401 1 B3P B3P . H 5 DY7 B 1 402 4 DY7 56H . I 4 B3P D 1 401 2 B3P B3P . J 5 DY7 D 1 402 3 DY7 56H . K 6 PUT E 1 401 3 PUT PUT . L 7 PGE E 1 402 1 PGE PGE . M 7 PGE E 1 403 2 PGE PGE . N 6 PUT F 1 401 4 PUT PUT . O 8 PG4 F 1 402 3 PG4 PG4 . P 9 HOH A 1 101 14 HOH HOH . Q 9 HOH B 1 501 2 HOH HOH . R 9 HOH C 1 101 4 HOH HOH . S 9 HOH D 1 501 8 HOH HOH . S 9 HOH D 2 502 5 HOH HOH . T 9 HOH F 1 501 13 HOH HOH . T 9 HOH F 2 502 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . O 8 -0.147 56.448 36.236 1 56.19 ? O1 PG4 402 F 1 HETATM 2 C C1 PG4 . . . O 8 -0.552 55.684 35.13 1 55.31 ? C1 PG4 402 F 1 HETATM 3 C C2 PG4 . . . O 8 -2.032 55.938 34.83 1 60.18 ? C2 PG4 402 F 1 HETATM 4 O O2 PG4 . . . O 8 -2.557 54.938 34.009 1 63.49 ? O2 PG4 402 F 1 HETATM 5 C C3 PG4 . . . O 8 -3.817 55.264 33.496 1 57.6 ? C3 PG4 402 F 1 HETATM 6 C C4 PG4 . . . O 8 -4.314 54.097 32.654 1 60.19 ? C4 PG4 402 F 1 HETATM 7 O O3 PG4 . . . O 8 -5.402 53.47 33.28 1 57.2 ? O3 PG4 402 F 1 HETATM 8 C C5 PG4 . . . O 8 -6.596 53.37 32.545 1 51.38 ? C5 PG4 402 F 1 HETATM 9 C C6 PG4 . . . O 8 -7.033 51.91 32.46 1 52.54 ? C6 PG4 402 F 1 HETATM 10 O O4 PG4 . . . O 8 -8.033 51.744 31.487 1 51.69 ? O4 PG4 402 F 1 HETATM 11 C C7 PG4 . . . O 8 -7.966 50.553 30.746 1 45.4 ? C7 PG4 402 F 1 HETATM 12 C C8 PG4 . . . O 8 -9.335 49.875 30.701 1 49 ? C8 PG4 402 F 1 HETATM 13 O O5 PG4 . . . O 8 -9.165 48.483 30.718 1 41.22 ? O5 PG4 402 F 1 HETATM 14 H HO1 PG4 . . . O 8 0.675 56.304 36.394 1 67.43 ? HO1 PG4 402 F 1 HETATM 15 H H11 PG4 . . . O 8 -0.021 55.93 34.358 1 66.38 ? H11 PG4 402 F 1 HETATM 16 H H12 PG4 . . . O 8 -0.421 54.743 35.324 1 66.38 ? H12 PG4 402 F 1 HETATM 17 H H21 PG4 . . . O 8 -2.124 56.795 34.384 1 72.21 ? H21 PG4 402 F 1 HETATM 18 H H22 PG4 . . . O 8 -2.527 55.958 35.663 1 72.21 ? H22 PG4 402 F 1 HETATM 19 H H31 PG4 . . . O 8 -4.435 55.426 34.226 1 69.11 ? H31 PG4 402 F 1 HETATM 20 H H32 PG4 . . . O 8 -3.749 56.059 32.944 1 69.11 ? H32 PG4 402 F 1 HETATM 21 H H41 PG4 . . . O 8 -4.59 54.424 31.783 1 72.23 ? H41 PG4 402 F 1 HETATM 22 H H42 PG4 . . . O 8 -3.595 53.455 32.541 1 72.23 ? H42 PG4 402 F 1 HETATM 23 H H51 PG4 . . . O 8 -7.288 53.888 32.984 1 61.66 ? H51 PG4 402 F 1 HETATM 24 H H52 PG4 . . . O 8 -6.452 53.716 31.65 1 61.66 ? H52 PG4 402 F 1 HETATM 25 H H61 PG4 . . . O 8 -6.268 51.361 32.227 1 63.04 ? H61 PG4 402 F 1 HETATM 26 H H62 PG4 . . . O 8 -7.377 51.63 33.322 1 63.04 ? H62 PG4 402 F 1 HETATM 27 H H71 PG4 . . . O 8 -7.678 50.754 29.842 1 54.48 ? H71 PG4 402 F 1 HETATM 28 H H72 PG4 . . . O 8 -7.326 49.953 31.161 1 54.48 ? H72 PG4 402 F 1 HETATM 29 H H81 PG4 . . . O 8 -9.857 50.147 31.473 1 58.81 ? H81 PG4 402 F 1 HETATM 30 H H82 PG4 . . . O 8 -9.798 50.135 29.889 1 58.81 ? H82 PG4 402 F 1 HETATM 31 H HO5 PG4 . . . O 8 -9.925 48.104 30.679 1 49.46 ? HO5 PG4 402 F 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #