data_6BM9
#
_model_server_result.job_id            IpqpFstbbYTFBcr6o69mAA 
_model_server_result.datetime_utc      '2024-11-14 04:52:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":302}' 
#
_entry.id    6BM9 
#
_exptl.entry_id    6BM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.41 
_cell.angle_gamma         90 
_cell.entry_id            6BM9 
_cell.length_a            128.596 
_cell.length_b            41.672 
_cell.length_c            156.764 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 91 A HIS 114 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc2 A SG CYS 175 A CYS 198 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc3 E ZN ZN . A ZN 301 1_555 B SG CYS 175 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc4 E ZN ZN . A ZN 301 1_555 L O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc5 B NE2 HIS 91 B HIS 114 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc6 C NE2 HIS 91 C HIS 114 1_555 H ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc7 C SG CYS 175 C CYS 198 1_555 J ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc8 H ZN ZN . C ZN 301 1_555 D SG CYS 175 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc9 D NE2 HIS 91 D HIS 114 1_555 J ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6BM9 
_atom_sites.fract_transf_matrix[1][1]    0.007776 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001289 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023997 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 301 1 ZN ZN . 
F 2 ZN B 1 301 1 ZN ZN . 
G 3 GOL B 1 302 2 GOL GOL . 
H 2 ZN C 1 301 1 ZN ZN . 
I 3 GOL C 1 302 1 GOL GOL . 
J 2 ZN D 1 301 1 ZN ZN . 
K 4 HOH A 1 401 187 HOH HOH . 
K 4 HOH A 2 402 121 HOH HOH . 
K 4 HOH A 3 403 14 HOH HOH . 
K 4 HOH A 4 404 11 HOH HOH . 
K 4 HOH A 5 405 22 HOH HOH . 
K 4 HOH A 6 406 167 HOH HOH . 
K 4 HOH A 7 407 1 HOH HOH . 
K 4 HOH A 8 408 256 HOH HOH . 
K 4 HOH A 9 409 172 HOH HOH . 
K 4 HOH A 10 410 26 HOH HOH . 
K 4 HOH A 11 411 136 HOH HOH . 
K 4 HOH A 12 412 41 HOH HOH . 
K 4 HOH A 13 413 35 HOH HOH . 
K 4 HOH A 14 414 21 HOH HOH . 
K 4 HOH A 15 415 45 HOH HOH . 
K 4 HOH A 16 416 37 HOH HOH . 
K 4 HOH A 17 417 254 HOH HOH . 
K 4 HOH A 18 418 225 HOH HOH . 
K 4 HOH A 19 419 8 HOH HOH . 
K 4 HOH A 20 420 55 HOH HOH . 
K 4 HOH A 21 421 40 HOH HOH . 
K 4 HOH A 22 422 255 HOH HOH . 
K 4 HOH A 23 423 71 HOH HOH . 
K 4 HOH A 24 424 38 HOH HOH . 
K 4 HOH A 25 425 185 HOH HOH . 
K 4 HOH A 26 426 207 HOH HOH . 
K 4 HOH A 27 427 253 HOH HOH . 
K 4 HOH A 28 428 124 HOH HOH . 
K 4 HOH A 29 429 54 HOH HOH . 
K 4 HOH A 30 430 103 HOH HOH . 
K 4 HOH A 31 431 12 HOH HOH . 
K 4 HOH A 32 432 9 HOH HOH . 
K 4 HOH A 33 433 10 HOH HOH . 
K 4 HOH A 34 434 78 HOH HOH . 
K 4 HOH A 35 435 47 HOH HOH . 
K 4 HOH A 36 436 39 HOH HOH . 
K 4 HOH A 37 437 114 HOH HOH . 
K 4 HOH A 38 438 128 HOH HOH . 
K 4 HOH A 39 439 200 HOH HOH . 
K 4 HOH A 40 440 174 HOH HOH . 
K 4 HOH A 41 441 110 HOH HOH . 
K 4 HOH A 42 442 90 HOH HOH . 
K 4 HOH A 43 443 244 HOH HOH . 
K 4 HOH A 44 444 227 HOH HOH . 
K 4 HOH A 45 445 259 HOH HOH . 
K 4 HOH A 46 446 213 HOH HOH . 
K 4 HOH A 47 447 158 HOH HOH . 
K 4 HOH A 48 448 210 HOH HOH . 
K 4 HOH A 49 449 209 HOH HOH . 
K 4 HOH A 50 450 162 HOH HOH . 
K 4 HOH A 51 451 184 HOH HOH . 
K 4 HOH A 52 452 134 HOH HOH . 
K 4 HOH A 53 453 211 HOH HOH . 
K 4 HOH A 54 454 72 HOH HOH . 
K 4 HOH A 55 455 212 HOH HOH . 
K 4 HOH A 56 456 169 HOH HOH . 
K 4 HOH A 57 457 150 HOH HOH . 
K 4 HOH A 58 458 214 HOH HOH . 
L 4 HOH B 1 401 31 HOH HOH . 
L 4 HOH B 2 402 247 HOH HOH . 
L 4 HOH B 3 403 87 HOH HOH . 
L 4 HOH B 4 404 130 HOH HOH . 
L 4 HOH B 5 405 57 HOH HOH . 
L 4 HOH B 6 406 3 HOH HOH . 
L 4 HOH B 7 407 24 HOH HOH . 
L 4 HOH B 8 408 52 HOH HOH . 
L 4 HOH B 9 409 120 HOH HOH . 
L 4 HOH B 10 410 43 HOH HOH . 
L 4 HOH B 11 411 160 HOH HOH . 
L 4 HOH B 12 412 246 HOH HOH . 
L 4 HOH B 13 413 166 HOH HOH . 
L 4 HOH B 14 414 53 HOH HOH . 
L 4 HOH B 15 415 6 HOH HOH . 
L 4 HOH B 16 416 36 HOH HOH . 
L 4 HOH B 17 417 25 HOH HOH . 
L 4 HOH B 18 418 42 HOH HOH . 
L 4 HOH B 19 419 20 HOH HOH . 
L 4 HOH B 20 420 65 HOH HOH . 
L 4 HOH B 21 421 7 HOH HOH . 
L 4 HOH B 22 422 127 HOH HOH . 
L 4 HOH B 23 423 79 HOH HOH . 
L 4 HOH B 24 424 198 HOH HOH . 
L 4 HOH B 25 425 29 HOH HOH . 
L 4 HOH B 26 426 63 HOH HOH . 
L 4 HOH B 27 427 152 HOH HOH . 
L 4 HOH B 28 428 113 HOH HOH . 
L 4 HOH B 29 429 262 HOH HOH . 
L 4 HOH B 30 430 155 HOH HOH . 
L 4 HOH B 31 431 85 HOH HOH . 
L 4 HOH B 32 432 173 HOH HOH . 
L 4 HOH B 33 433 105 HOH HOH . 
L 4 HOH B 34 434 68 HOH HOH . 
L 4 HOH B 35 435 102 HOH HOH . 
L 4 HOH B 36 436 58 HOH HOH . 
L 4 HOH B 37 437 177 HOH HOH . 
L 4 HOH B 38 438 100 HOH HOH . 
L 4 HOH B 39 439 2 HOH HOH . 
L 4 HOH B 40 440 95 HOH HOH . 
L 4 HOH B 41 441 106 HOH HOH . 
L 4 HOH B 42 442 108 HOH HOH . 
L 4 HOH B 43 443 116 HOH HOH . 
L 4 HOH B 44 444 115 HOH HOH . 
L 4 HOH B 45 445 168 HOH HOH . 
L 4 HOH B 46 446 107 HOH HOH . 
L 4 HOH B 47 447 70 HOH HOH . 
L 4 HOH B 48 448 96 HOH HOH . 
L 4 HOH B 49 449 89 HOH HOH . 
L 4 HOH B 50 450 245 HOH HOH . 
L 4 HOH B 51 451 196 HOH HOH . 
L 4 HOH B 52 452 123 HOH HOH . 
L 4 HOH B 53 453 191 HOH HOH . 
L 4 HOH B 54 454 67 HOH HOH . 
L 4 HOH B 55 455 156 HOH HOH . 
L 4 HOH B 56 456 62 HOH HOH . 
L 4 HOH B 57 457 230 HOH HOH . 
L 4 HOH B 58 458 199 HOH HOH . 
L 4 HOH B 59 459 226 HOH HOH . 
L 4 HOH B 60 460 122 HOH HOH . 
L 4 HOH B 61 461 98 HOH HOH . 
L 4 HOH B 62 462 189 HOH HOH . 
L 4 HOH B 63 463 231 HOH HOH . 
L 4 HOH B 64 464 251 HOH HOH . 
L 4 HOH B 65 465 201 HOH HOH . 
L 4 HOH B 66 466 223 HOH HOH . 
M 4 HOH C 1 401 97 HOH HOH . 
M 4 HOH C 2 402 86 HOH HOH . 
M 4 HOH C 3 403 19 HOH HOH . 
M 4 HOH C 4 404 5 HOH HOH . 
M 4 HOH C 5 405 60 HOH HOH . 
M 4 HOH C 6 406 69 HOH HOH . 
M 4 HOH C 7 407 44 HOH HOH . 
M 4 HOH C 8 408 139 HOH HOH . 
M 4 HOH C 9 409 61 HOH HOH . 
M 4 HOH C 10 410 30 HOH HOH . 
M 4 HOH C 11 411 28 HOH HOH . 
M 4 HOH C 12 412 186 HOH HOH . 
M 4 HOH C 13 413 217 HOH HOH . 
M 4 HOH C 14 414 4 HOH HOH . 
M 4 HOH C 15 415 215 HOH HOH . 
M 4 HOH C 16 416 228 HOH HOH . 
M 4 HOH C 17 417 159 HOH HOH . 
M 4 HOH C 18 418 15 HOH HOH . 
M 4 HOH C 19 419 82 HOH HOH . 
M 4 HOH C 20 420 92 HOH HOH . 
M 4 HOH C 21 421 119 HOH HOH . 
M 4 HOH C 22 422 192 HOH HOH . 
M 4 HOH C 23 423 144 HOH HOH . 
M 4 HOH C 24 424 16 HOH HOH . 
M 4 HOH C 25 425 208 HOH HOH . 
M 4 HOH C 26 426 13 HOH HOH . 
M 4 HOH C 27 427 143 HOH HOH . 
M 4 HOH C 28 428 165 HOH HOH . 
M 4 HOH C 29 429 117 HOH HOH . 
M 4 HOH C 30 430 32 HOH HOH . 
M 4 HOH C 31 431 171 HOH HOH . 
M 4 HOH C 32 432 56 HOH HOH . 
M 4 HOH C 33 433 81 HOH HOH . 
M 4 HOH C 34 434 248 HOH HOH . 
M 4 HOH C 35 435 83 HOH HOH . 
M 4 HOH C 36 436 175 HOH HOH . 
M 4 HOH C 37 437 195 HOH HOH . 
M 4 HOH C 38 438 180 HOH HOH . 
M 4 HOH C 39 439 221 HOH HOH . 
M 4 HOH C 40 440 129 HOH HOH . 
M 4 HOH C 41 441 93 HOH HOH . 
M 4 HOH C 42 442 140 HOH HOH . 
M 4 HOH C 43 443 219 HOH HOH . 
M 4 HOH C 44 444 216 HOH HOH . 
M 4 HOH C 45 445 109 HOH HOH . 
M 4 HOH C 46 446 222 HOH HOH . 
M 4 HOH C 47 447 181 HOH HOH . 
M 4 HOH C 48 448 163 HOH HOH . 
M 4 HOH C 49 449 193 HOH HOH . 
M 4 HOH C 50 450 112 HOH HOH . 
M 4 HOH C 51 451 132 HOH HOH . 
M 4 HOH C 52 452 94 HOH HOH . 
M 4 HOH C 53 453 182 HOH HOH . 
N 4 HOH D 1 401 145 HOH HOH . 
N 4 HOH D 2 402 91 HOH HOH . 
N 4 HOH D 3 403 161 HOH HOH . 
N 4 HOH D 4 404 176 HOH HOH . 
N 4 HOH D 5 405 84 HOH HOH . 
N 4 HOH D 6 406 125 HOH HOH . 
N 4 HOH D 7 407 76 HOH HOH . 
N 4 HOH D 8 408 34 HOH HOH . 
N 4 HOH D 9 409 239 HOH HOH . 
N 4 HOH D 10 410 104 HOH HOH . 
N 4 HOH D 11 411 33 HOH HOH . 
N 4 HOH D 12 412 131 HOH HOH . 
N 4 HOH D 13 413 77 HOH HOH . 
N 4 HOH D 14 414 178 HOH HOH . 
N 4 HOH D 15 415 138 HOH HOH . 
N 4 HOH D 16 416 204 HOH HOH . 
N 4 HOH D 17 417 59 HOH HOH . 
N 4 HOH D 18 418 164 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 54.524 3.383 58.695 1 59.93 ? C1 GOL 302 C 1 
HETATM 2 O O1 GOL . . . I 3 54.722 4.774 58.57 1 60.54 ? O1 GOL 302 C 1 
HETATM 3 C C2 GOL . . . I 3 53.033 3.076 58.638 1 59.51 ? C2 GOL 302 C 1 
HETATM 4 O O2 GOL . . . I 3 52.468 3.676 57.494 1 59.44 ? O2 GOL 302 C 1 
HETATM 5 C C3 GOL . . . I 3 52.8 1.57 58.601 1 59.21 ? C3 GOL 302 C 1 
HETATM 6 O O3 GOL . . . I 3 53.947 0.887 59.057 1 59.55 ? O3 GOL 302 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#