data_6BMC # _model_server_result.job_id F1rlh9pGRUEve9DUVeWPLQ _model_server_result.datetime_utc '2024-12-21 15:46:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6BMC # _exptl.entry_id 6BMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BMC _cell.length_a 53.757 _cell.length_b 169.722 _cell.length_c 170.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 303 A HIS 303 1_555 D CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A OE1 GLU 345 A GLU 345 1_555 D CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc3 A OE2 GLU 345 A GLU 345 1_555 D CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc4 A OD2 ASP 373 A ASP 373 1_555 D CO CO . A CO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 D CO CO . A CO 502 1_555 H O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc6 B NE2 HIS 303 B HIS 303 1_555 E CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc7 B OE1 GLU 345 B GLU 345 1_555 E CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc8 B OE2 GLU 345 B GLU 345 1_555 E CO CO . B CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc9 E CO CO . B CO 501 1_555 I O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 237 n n C1 O2' PEP sing 238 n n C1 C2 PEP sing 239 n n O2' HO2 PEP sing 240 n n C2 C3 PEP doub 241 n n C2 O2 PEP sing 242 n n C3 H31 PEP sing 243 n n C3 H32 PEP sing 244 n n O2 P PEP sing 245 n n P O1P PEP doub 246 n n P O2P PEP sing 247 n n P O3P PEP sing 248 n n O2P HOP2 PEP sing 249 n n O3P HOP3 PEP sing 250 n n # _atom_sites.entry_id 6BMC _atom_sites.fract_transf_matrix[1][1] 0.018602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEP A 1 501 501 PEP PEP . D 3 CO A 1 502 505 CO CO . E 3 CO B 1 501 505 CO CO . F 2 PEP B 1 502 501 PEP PEP . G 4 CL B 1 503 1 CL CL . H 5 HOH A 1 601 506 HOH HOH . H 5 HOH A 2 602 6 HOH HOH . H 5 HOH A 3 603 4 HOH HOH . H 5 HOH A 4 604 9 HOH HOH . H 5 HOH A 5 605 1 HOH HOH . H 5 HOH A 6 606 8 HOH HOH . H 5 HOH A 7 607 3 HOH HOH . H 5 HOH A 8 608 10 HOH HOH . H 5 HOH A 9 609 7 HOH HOH . I 5 HOH B 1 601 5 HOH HOH . I 5 HOH B 2 602 506 HOH HOH . I 5 HOH B 3 603 2 HOH HOH . I 5 HOH B 4 604 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . F 2 -9.969 70.383 -18.152 1 96.09 ? C1 PEP 502 B 1 HETATM 2 O O1 PEP . . . F 2 -9.733 70.21 -19.369 1 108.26 ? O1 PEP 502 B 1 HETATM 3 O O2' PEP . . . F 2 -9.882 69.447 -17.332 1 90.88 ? O2' PEP 502 B 1 HETATM 4 C C2 PEP . . . F 2 -10.342 71.706 -17.666 1 96.5 ? C2 PEP 502 B 1 HETATM 5 C C3 PEP . . . F 2 -11.031 72.521 -18.442 1 96.62 ? C3 PEP 502 B 1 HETATM 6 O O2 PEP . . . F 2 -9.949 72.111 -16.326 1 92.83 ? O2 PEP 502 B 1 HETATM 7 P P PEP . . . F 2 -10.952 72.885 -15.33 1 88.3 ? P PEP 502 B 1 HETATM 8 O O1P PEP . . . F 2 -10.961 74.304 -15.853 1 89.13 ? O1P PEP 502 B 1 HETATM 9 O O2P PEP . . . F 2 -10.282 72.712 -13.99 1 95.29 ? O2P PEP 502 B 1 HETATM 10 O O3P PEP . . . F 2 -12.274 72.167 -15.436 1 75.86 ? O3P PEP 502 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #