data_6BML # _model_server_result.job_id U7PG9h0OAl51XhCTY6wuoA _model_server_result.datetime_utc '2025-04-25 09:15:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 6BML # _exptl.entry_id 6BML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6BML _cell.length_a 99.794 _cell.length_b 99.794 _cell.length_c 159.947 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BML _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 124 A CYS 128 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc2 A SG CYS 127 A CYS 131 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A ND1 HIS 137 A HIS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A SG CYS 138 A CYS 142 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 A SG CYS 141 A CYS 145 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 A SG CYS 144 A CYS 148 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A ND1 HIS 151 A HIS 155 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc8 A SG CYS 158 A CYS 162 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc9 B SG CYS 124 B CYS 128 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc10 B SG CYS 127 B CYS 131 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc11 B ND1 HIS 137 B HIS 141 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 B SG CYS 138 B CYS 142 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 B SG CYS 141 B CYS 145 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc14 B SG CYS 144 B CYS 148 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc15 B ND1 HIS 151 B HIS 155 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc16 B SG CYS 158 B CYS 162 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 309 n n C1 O2 PLM doub 310 n n C1 C2 PLM sing 311 n n O1 H PLM sing 312 n n C2 C3 PLM sing 313 n n C2 H21 PLM sing 314 n n C2 H22 PLM sing 315 n n C3 C4 PLM sing 316 n n C3 H31 PLM sing 317 n n C3 H32 PLM sing 318 n n C4 C5 PLM sing 319 n n C4 H41 PLM sing 320 n n C4 H42 PLM sing 321 n n C5 C6 PLM sing 322 n n C5 H51 PLM sing 323 n n C5 H52 PLM sing 324 n n C6 C7 PLM sing 325 n n C6 H61 PLM sing 326 n n C6 H62 PLM sing 327 n n C7 C8 PLM sing 328 n n C7 H71 PLM sing 329 n n C7 H72 PLM sing 330 n n C8 C9 PLM sing 331 n n C8 H81 PLM sing 332 n n C8 H82 PLM sing 333 n n C9 CA PLM sing 334 n n C9 H91 PLM sing 335 n n C9 H92 PLM sing 336 n n CA CB PLM sing 337 n n CA HA1 PLM sing 338 n n CA HA2 PLM sing 339 n n CB CC PLM sing 340 n n CB HB1 PLM sing 341 n n CB HB2 PLM sing 342 n n CC CD PLM sing 343 n n CC HC1 PLM sing 344 n n CC HC2 PLM sing 345 n n CD CE PLM sing 346 n n CD HD1 PLM sing 347 n n CD HD2 PLM sing 348 n n CE CF PLM sing 349 n n CE HE1 PLM sing 350 n n CE HE2 PLM sing 351 n n CF CG PLM sing 352 n n CF HF1 PLM sing 353 n n CF HF2 PLM sing 354 n n CG HG1 PLM sing 355 n n CG HG2 PLM sing 356 n n CG HG3 PLM sing 357 n n # _atom_sites.entry_id 6BML _atom_sites.fract_transf_matrix[1][1] 0.010021 _atom_sites.fract_transf_matrix[1][2] 0.005785 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011571 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 2 ZN A 1 402 402 ZN ZN . E 3 PLM A 1 403 501 PLM B2P . F 4 PO4 A 1 404 701 PO4 PO4 . G 2 ZN B 1 401 401 ZN ZN . H 2 ZN B 1 402 402 ZN ZN . I 3 PLM B 1 403 501 PLM B2P . J 5 PAP B 1 404 601 PAP ACO . K 4 PO4 B 1 405 701 PO4 PO4 . L 6 HOH A 1 501 2 HOH HOH . L 6 HOH A 2 502 1 HOH HOH . M 6 HOH B 1 501 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . I 3 0.824 -12.784 -16.893 1 123.79 ? C1 PLM 403 B 1 HETATM 2 O O1 PLM . . . I 3 1.395 -12.072 -16.026 1 145.24 -1 O1 PLM 403 B 1 HETATM 3 O O2 PLM . . . I 3 -0.37 -12.551 -17.211 1 123.15 ? O2 PLM 403 B 1 HETATM 4 C C2 PLM . . . I 3 1.584 -13.924 -17.563 1 110.38 ? C2 PLM 403 B 1 HETATM 5 C C3 PLM . . . I 3 2.442 -13.427 -18.723 1 105.25 ? C3 PLM 403 B 1 HETATM 6 C C4 PLM . . . I 3 3.197 -14.605 -19.333 1 115.85 ? C4 PLM 403 B 1 HETATM 7 C C5 PLM . . . I 3 4.076 -14.115 -20.479 1 105.23 ? C5 PLM 403 B 1 HETATM 8 C C6 PLM . . . I 3 3.661 -14.819 -21.769 1 100.61 ? C6 PLM 403 B 1 HETATM 9 C C7 PLM . . . I 3 4.674 -14.491 -22.864 1 96.98 ? C7 PLM 403 B 1 HETATM 10 C C8 PLM . . . I 3 4.303 -15.215 -24.155 1 100.58 ? C8 PLM 403 B 1 HETATM 11 C C9 PLM . . . I 3 5.49 -15.151 -25.112 1 96.31 ? C9 PLM 403 B 1 HETATM 12 C CA PLM . . . I 3 5.097 -15.742 -26.464 1 92.91 ? CA PLM 403 B 1 HETATM 13 C CB PLM . . . I 3 6.313 -15.699 -27.385 1 98.96 ? CB PLM 403 B 1 HETATM 14 C CC PLM . . . I 3 5.878 -15.894 -28.835 1 104.95 ? CC PLM 403 B 1 HETATM 15 C CD PLM . . . I 3 7.064 -15.601 -29.752 1 109.93 ? CD PLM 403 B 1 HETATM 16 C CE PLM . . . I 3 6.644 -15.76 -31.212 1 105.92 ? CE PLM 403 B 1 HETATM 17 C CF PLM . . . I 3 7.415 -14.761 -32.071 1 104.74 ? CF PLM 403 B 1 HETATM 18 C CG PLM . . . I 3 7.151 -15.042 -33.55 1 105.08 ? CG PLM 403 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #