data_6BMM
#
_model_server_result.job_id            fi8kL3N-YK_oNoF0-CE5-A 
_model_server_result.datetime_utc      '2024-11-27 00:08:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":404}' 
#
_entry.id    6BMM 
#
_exptl.entry_id    6BMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.51 
_cell.angle_gamma         90 
_cell.entry_id            6BMM 
_cell.length_a            86.519 
_cell.length_b            57.7 
_cell.length_c            94.098 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 139 B CYS 145 1_555 B SG CYS 156 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
covale ? covale1 A C HIS 149 A HIS 155 1_555 A N CME 150 A CME 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CME 150 A CME 156 1_555 A N PRO 151 A PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale3 B C HIS 149 B HIS 155 1_555 B N CME 150 B CME 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C CME 150 B CME 156 1_555 B N PRO 151 B PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
metalc ? metalc1 A SG CYS 122 A CYS 128 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 A SG CYS 125 A CYS 131 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc3 A ND1 HIS 135 A HIS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc4 A SG CYS 136 A CYS 142 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc5 A SG CYS 139 A CYS 145 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 A SG CYS 142 A CYS 148 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 A ND1 HIS 149 A HIS 155 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc8 A SG CYS 156 A CYS 162 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 B SG CYS 122 B CYS 128 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc10 B SG CYS 125 B CYS 131 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc11 B ND1 HIS 135 B HIS 141 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc12 B SG CYS 136 B CYS 142 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc13 B SG CYS 139 B CYS 145 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc14 B SG CYS 142 B CYS 148 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc15 B ND1 HIS 149 B HIS 155 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc16 B SG CYS 156 B CYS 162 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 279 n n 
C1 O20 OLB sing 280 n n 
C2 C1 OLB sing 281 n n 
C3 C2 OLB sing 282 n n 
C4 C3 OLB sing 283 n n 
C5 C4 OLB sing 284 n n 
C5 C6 OLB sing 285 n n 
O20 C21 OLB sing 286 n n 
C21 C22 OLB sing 287 n n 
C22 C24 OLB sing 288 n n 
O23 C22 OLB sing 289 n n 
C24 O25 OLB sing 290 n n 
C6 C7 OLB sing 291 n n 
C7 C8 OLB sing 292 n n 
C8 C9 OLB sing 293 n n 
C9 C10 OLB doub 294 z n 
C10 C11 OLB sing 295 n n 
C2 H2 OLB sing 296 n n 
C2 H2A OLB sing 297 n n 
C3 H3 OLB sing 298 n n 
C3 H3A OLB sing 299 n n 
C4 H4 OLB sing 300 n n 
C4 H4A OLB sing 301 n n 
C5 H5 OLB sing 302 n n 
C5 H5A OLB sing 303 n n 
C21 H21 OLB sing 304 n n 
C21 H21A OLB sing 305 n n 
C22 H22 OLB sing 306 n n 
O23 HO23 OLB sing 307 n n 
C24 H24 OLB sing 308 n n 
C24 H24A OLB sing 309 n n 
O25 HO25 OLB sing 310 n n 
C6 H16 OLB sing 311 n n 
C6 H17 OLB sing 312 n n 
C7 H18 OLB sing 313 n n 
C7 H19 OLB sing 314 n n 
C8 H20 OLB sing 315 n n 
C8 H211 OLB sing 316 n n 
C9 H221 OLB sing 317 n n 
C10 H23 OLB sing 318 n n 
C11 H241 OLB sing 319 n n 
C11 H25 OLB sing 320 n n 
C11 C12 OLB sing 321 n n 
C12 H26 OLB sing 322 n n 
C12 C13 OLB sing 323 n n 
C12 H27 OLB sing 324 n n 
C13 C14 OLB sing 325 n n 
C13 H28 OLB sing 326 n n 
C13 H29 OLB sing 327 n n 
C14 H30 OLB sing 328 n n 
C14 H31 OLB sing 329 n n 
C14 C15 OLB sing 330 n n 
C15 C16 OLB sing 331 n n 
C15 H32 OLB sing 332 n n 
C15 H33 OLB sing 333 n n 
C16 H34 OLB sing 334 n n 
C16 H35 OLB sing 335 n n 
C16 C17 OLB sing 336 n n 
C17 C18 OLB sing 337 n n 
C17 H36 OLB sing 338 n n 
C17 H37 OLB sing 339 n n 
C18 H38 OLB sing 340 n n 
C18 H39 OLB sing 341 n n 
C18 H40 OLB sing 342 n n 
#
_atom_sites.entry_id                     6BMM 
_atom_sites.fract_transf_matrix[1][1]    0.011558 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005515 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 2 ZN A 1 402 402 ZN ZN . 
E 3 PO4 A 1 403 403 PO4 PO4 . 
F 4 OLB A 1 404 404 OLB OLB . 
G 5 DYD A 1 405 405 DYD LIG . 
H 5 DYD A 1 406 406 DYD LIG . 
I 5 DYD A 1 407 407 DYD LIG . 
J 5 DYD A 1 408 408 DYD LIG . 
K 5 DYD A 1 409 409 DYD LIG . 
L 2 ZN B 1 401 401 ZN ZN . 
M 2 ZN B 1 402 402 ZN ZN . 
N 3 PO4 B 1 403 403 PO4 PO4 . 
O 4 OLB B 1 404 404 OLB OLB . 
P 5 DYD B 1 405 405 DYD LIG . 
Q 6 HOH A 1 501 40 HOH HOH . 
Q 6 HOH A 2 502 11 HOH HOH . 
Q 6 HOH A 3 503 2 HOH HOH . 
Q 6 HOH A 4 504 27 HOH HOH . 
Q 6 HOH A 5 505 7 HOH HOH . 
Q 6 HOH A 6 506 6 HOH HOH . 
Q 6 HOH A 7 507 43 HOH HOH . 
Q 6 HOH A 8 508 14 HOH HOH . 
Q 6 HOH A 9 509 30 HOH HOH . 
Q 6 HOH A 10 510 20 HOH HOH . 
Q 6 HOH A 11 511 10 HOH HOH . 
Q 6 HOH A 12 512 26 HOH HOH . 
Q 6 HOH A 13 513 45 HOH HOH . 
Q 6 HOH A 14 514 19 HOH HOH . 
Q 6 HOH A 15 515 21 HOH HOH . 
Q 6 HOH A 16 516 13 HOH HOH . 
Q 6 HOH A 17 517 34 HOH HOH . 
Q 6 HOH A 18 518 8 HOH HOH . 
Q 6 HOH A 19 519 5 HOH HOH . 
Q 6 HOH A 20 520 1 HOH HOH . 
Q 6 HOH A 21 521 29 HOH HOH . 
Q 6 HOH A 22 522 23 HOH HOH . 
Q 6 HOH A 23 523 25 HOH HOH . 
Q 6 HOH A 24 524 17 HOH HOH . 
Q 6 HOH A 25 525 9 HOH HOH . 
Q 6 HOH A 26 526 44 HOH HOH . 
Q 6 HOH A 27 527 49 HOH HOH . 
Q 6 HOH A 28 528 28 HOH HOH . 
Q 6 HOH A 29 529 42 HOH HOH . 
R 6 HOH B 1 501 18 HOH HOH . 
R 6 HOH B 2 502 47 HOH HOH . 
R 6 HOH B 3 503 33 HOH HOH . 
R 6 HOH B 4 504 36 HOH HOH . 
R 6 HOH B 5 505 52 HOH HOH . 
R 6 HOH B 6 506 37 HOH HOH . 
R 6 HOH B 7 507 4 HOH HOH . 
R 6 HOH B 8 508 39 HOH HOH . 
R 6 HOH B 9 509 41 HOH HOH . 
R 6 HOH B 10 510 50 HOH HOH . 
R 6 HOH B 11 511 15 HOH HOH . 
R 6 HOH B 12 512 35 HOH HOH . 
R 6 HOH B 13 513 24 HOH HOH . 
R 6 HOH B 14 514 38 HOH HOH . 
R 6 HOH B 15 515 3 HOH HOH . 
R 6 HOH B 16 516 31 HOH HOH . 
R 6 HOH B 17 517 32 HOH HOH . 
R 6 HOH B 18 518 22 HOH HOH . 
R 6 HOH B 19 519 48 HOH HOH . 
R 6 HOH B 20 520 53 HOH HOH . 
R 6 HOH B 21 521 46 HOH HOH . 
R 6 HOH B 22 522 16 HOH HOH . 
R 6 HOH B 23 523 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . O 4 0.072 -15.159 -57.498 1 105.52 ? C1 OLB 404 B 1 
HETATM 2 C C2 OLB . . . O 4 -0.818 -15.599 -56.339 1 99.66 ? C2 OLB 404 B 1 
HETATM 3 C C3 OLB . . . O 4 -1.095 -14.397 -55.439 1 101.19 ? C3 OLB 404 B 1 
HETATM 4 C C4 OLB . . . O 4 -2.596 -14.121 -55.393 1 99.1 ? C4 OLB 404 B 1 
HETATM 5 C C5 OLB . . . O 4 -2.869 -12.97 -54.427 1 99.28 ? C5 OLB 404 B 1 
HETATM 6 O O19 OLB . . . O 4 -0.268 -14.26 -58.191 1 107.48 ? O19 OLB 404 B 1 
HETATM 7 O O20 OLB . . . O 4 1.287 -15.804 -57.743 1 113.2 ? O20 OLB 404 B 1 
HETATM 8 C C21 OLB . . . O 4 2.352 -14.924 -57.97 1 102.83 ? C21 OLB 404 B 1 
HETATM 9 C C22 OLB . . . O 4 3.659 -15.712 -58.006 1 106.46 ? C22 OLB 404 B 1 
HETATM 10 O O23 OLB . . . O 4 3.417 -16.985 -58.534 1 111.07 ? O23 OLB 404 B 1 
HETATM 11 C C24 OLB . . . O 4 4.672 -14.98 -58.882 1 97.23 ? C24 OLB 404 B 1 
HETATM 12 O O25 OLB . . . O 4 5.912 -15.627 -58.804 1 104.58 ? O25 OLB 404 B 1 
HETATM 13 C C6 OLB . . . O 4 -4.221 -12.333 -54.745 1 90.47 ? C6 OLB 404 B 1 
HETATM 14 C C7 OLB . . . O 4 -4.081 -11.431 -55.969 1 96.09 ? C7 OLB 404 B 1 
HETATM 15 C C8 OLB . . . O 4 -4.959 -10.192 -55.797 1 93.27 ? C8 OLB 404 B 1 
HETATM 16 C C9 OLB . . . O 4 -4.444 -9.076 -56.704 1 93.09 ? C9 OLB 404 B 1 
HETATM 17 C C10 OLB . . . O 4 -5.13 -7.96 -56.857 1 84.35 ? C10 OLB 404 B 1 
HETATM 18 C C11 OLB . . . O 4 -6.456 -7.755 -56.127 1 87.21 ? C11 OLB 404 B 1 
HETATM 19 C C12 OLB . . . O 4 -7.255 -6.641 -56.8 1 78.53 ? C12 OLB 404 B 1 
HETATM 20 C C13 OLB . . . O 4 -8.664 -6.605 -56.21 1 76.38 ? C13 OLB 404 B 1 
HETATM 21 C C14 OLB . . . O 4 -9.61 -5.855 -57.145 1 80.95 ? C14 OLB 404 B 1 
HETATM 22 C C15 OLB . . . O 4 -10.871 -6.691 -57.352 1 78.27 ? C15 OLB 404 B 1 
HETATM 23 C C16 OLB . . . O 4 -12.1 -5.786 -57.392 1 81.3 ? C16 OLB 404 B 1 
HETATM 24 C C17 OLB . . . O 4 -13.255 -6.536 -58.053 1 81.18 ? C17 OLB 404 B 1 
HETATM 25 C C18 OLB . . . O 4 -14.546 -6.267 -57.285 1 75.95 ? C18 OLB 404 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           1088 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           25 
#