data_6BMM
#
_model_server_result.job_id            B0fw2UL6qYk3O4kxyidAJA 
_model_server_result.datetime_utc      '2024-11-15 02:24:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":407}' 
#
_entry.id    6BMM 
#
_exptl.entry_id    6BMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,5S)-hexane-2,5-diol 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.51 
_cell.angle_gamma         90 
_cell.entry_id            6BMM 
_cell.length_a            86.519 
_cell.length_b            57.7 
_cell.length_c            94.098 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 139 B CYS 145 1_555 B SG CYS 156 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
covale ? covale1 A C HIS 149 A HIS 155 1_555 A N CME 150 A CME 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C CME 150 A CME 156 1_555 A N PRO 151 A PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale3 B C HIS 149 B HIS 155 1_555 B N CME 150 B CME 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C CME 150 B CME 156 1_555 B N PRO 151 B PRO 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
metalc ? metalc1 A SG CYS 122 A CYS 128 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc2 A SG CYS 125 A CYS 131 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc3 A ND1 HIS 135 A HIS 141 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc4 A SG CYS 136 A CYS 142 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc5 A SG CYS 139 A CYS 145 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc6 A SG CYS 142 A CYS 148 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc7 A ND1 HIS 149 A HIS 155 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
metalc ? metalc8 A SG CYS 156 A CYS 162 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 B SG CYS 122 B CYS 128 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc10 B SG CYS 125 B CYS 131 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc11 B ND1 HIS 135 B HIS 141 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc12 B SG CYS 136 B CYS 142 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc13 B SG CYS 139 B CYS 145 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc14 B SG CYS 142 B CYS 148 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc15 B ND1 HIS 149 B HIS 155 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc16 B SG CYS 156 B CYS 162 1_555 M ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                DYD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,5S)-hexane-2,5-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O08 C02 DYD sing 104 n n 
C02 C01 DYD sing 105 n n 
C02 C03 DYD sing 106 n n 
C04 C03 DYD sing 107 n n 
C04 C05 DYD sing 108 n n 
O07 C05 DYD sing 109 n n 
C06 C05 DYD sing 110 n n 
C01 H1 DYD sing 111 n n 
C01 H2 DYD sing 112 n n 
C01 H3 DYD sing 113 n n 
C02 H4 DYD sing 114 n n 
C03 H5 DYD sing 115 n n 
C03 H6 DYD sing 116 n n 
C04 H7 DYD sing 117 n n 
C04 H8 DYD sing 118 n n 
C05 H9 DYD sing 119 n n 
C06 H10 DYD sing 120 n n 
C06 H11 DYD sing 121 n n 
C06 H12 DYD sing 122 n n 
O07 H13 DYD sing 123 n n 
O08 H14 DYD sing 124 n n 
#
_atom_sites.entry_id                     6BMM 
_atom_sites.fract_transf_matrix[1][1]    0.011558 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005515 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011775 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 401 401 ZN ZN . 
D 2 ZN A 1 402 402 ZN ZN . 
E 3 PO4 A 1 403 403 PO4 PO4 . 
F 4 OLB A 1 404 404 OLB OLB . 
G 5 DYD A 1 405 405 DYD LIG . 
H 5 DYD A 1 406 406 DYD LIG . 
I 5 DYD A 1 407 407 DYD LIG . 
J 5 DYD A 1 408 408 DYD LIG . 
K 5 DYD A 1 409 409 DYD LIG . 
L 2 ZN B 1 401 401 ZN ZN . 
M 2 ZN B 1 402 402 ZN ZN . 
N 3 PO4 B 1 403 403 PO4 PO4 . 
O 4 OLB B 1 404 404 OLB OLB . 
P 5 DYD B 1 405 405 DYD LIG . 
Q 6 HOH A 1 501 40 HOH HOH . 
Q 6 HOH A 2 502 11 HOH HOH . 
Q 6 HOH A 3 503 2 HOH HOH . 
Q 6 HOH A 4 504 27 HOH HOH . 
Q 6 HOH A 5 505 7 HOH HOH . 
Q 6 HOH A 6 506 6 HOH HOH . 
Q 6 HOH A 7 507 43 HOH HOH . 
Q 6 HOH A 8 508 14 HOH HOH . 
Q 6 HOH A 9 509 30 HOH HOH . 
Q 6 HOH A 10 510 20 HOH HOH . 
Q 6 HOH A 11 511 10 HOH HOH . 
Q 6 HOH A 12 512 26 HOH HOH . 
Q 6 HOH A 13 513 45 HOH HOH . 
Q 6 HOH A 14 514 19 HOH HOH . 
Q 6 HOH A 15 515 21 HOH HOH . 
Q 6 HOH A 16 516 13 HOH HOH . 
Q 6 HOH A 17 517 34 HOH HOH . 
Q 6 HOH A 18 518 8 HOH HOH . 
Q 6 HOH A 19 519 5 HOH HOH . 
Q 6 HOH A 20 520 1 HOH HOH . 
Q 6 HOH A 21 521 29 HOH HOH . 
Q 6 HOH A 22 522 23 HOH HOH . 
Q 6 HOH A 23 523 25 HOH HOH . 
Q 6 HOH A 24 524 17 HOH HOH . 
Q 6 HOH A 25 525 9 HOH HOH . 
Q 6 HOH A 26 526 44 HOH HOH . 
Q 6 HOH A 27 527 49 HOH HOH . 
Q 6 HOH A 28 528 28 HOH HOH . 
Q 6 HOH A 29 529 42 HOH HOH . 
R 6 HOH B 1 501 18 HOH HOH . 
R 6 HOH B 2 502 47 HOH HOH . 
R 6 HOH B 3 503 33 HOH HOH . 
R 6 HOH B 4 504 36 HOH HOH . 
R 6 HOH B 5 505 52 HOH HOH . 
R 6 HOH B 6 506 37 HOH HOH . 
R 6 HOH B 7 507 4 HOH HOH . 
R 6 HOH B 8 508 39 HOH HOH . 
R 6 HOH B 9 509 41 HOH HOH . 
R 6 HOH B 10 510 50 HOH HOH . 
R 6 HOH B 11 511 15 HOH HOH . 
R 6 HOH B 12 512 35 HOH HOH . 
R 6 HOH B 13 513 24 HOH HOH . 
R 6 HOH B 14 514 38 HOH HOH . 
R 6 HOH B 15 515 3 HOH HOH . 
R 6 HOH B 16 516 31 HOH HOH . 
R 6 HOH B 17 517 32 HOH HOH . 
R 6 HOH B 18 518 22 HOH HOH . 
R 6 HOH B 19 519 48 HOH HOH . 
R 6 HOH B 20 520 53 HOH HOH . 
R 6 HOH B 21 521 46 HOH HOH . 
R 6 HOH B 22 522 16 HOH HOH . 
R 6 HOH B 23 523 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 DYD . . . I 5 -18.772 -19.457 -18.115 1 81.17 ? C01 DYD 407 A 1 
HETATM 2 C C02 DYD . . . I 5 -19.704 -18.248 -18.146 1 83.36 ? C02 DYD 407 A 1 
HETATM 3 C C03 DYD . . . I 5 -20.553 -18.187 -19.413 1 74.01 ? C03 DYD 407 A 1 
HETATM 4 C C04 DYD . . . I 5 -21.145 -16.797 -19.623 1 78.74 ? C04 DYD 407 A 1 
HETATM 5 C C05 DYD . . . I 5 -22.67 -16.81 -19.606 1 88.89 ? C05 DYD 407 A 1 
HETATM 6 C C06 DYD . . . I 5 -23.268 -15.441 -19.919 1 77.08 ? C06 DYD 407 A 1 
HETATM 7 O O07 DYD . . . I 5 -23.076 -17.179 -18.317 1 98.01 ? O07 DYD 407 A 1 
HETATM 8 O O08 DYD . . . I 5 -20.578 -18.344 -17.055 1 95.67 ? O08 DYD 407 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
#