data_6BMS # _model_server_result.job_id '_XLPfaLRMFKXMAmxj4a0Nw' _model_server_result.datetime_utc '2025-02-17 07:15:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1004}' # _entry.id 6BMS # _exptl.entry_id 6BMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BMS _cell.length_a 186.402 _cell.length_b 186.402 _cell.length_c 90.177 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1 B,K,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 131 A CYS 115 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A SG CYS 134 A CYS 118 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A ND1 HIS 144 A HIS 128 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A SG CYS 145 A CYS 129 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc5 A SG CYS 148 A CYS 132 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 A SG CYS 151 A CYS 135 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc7 A ND1 HIS 158 A HIS 142 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc8 A SG CYS 165 A CYS 149 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 B SG CYS 131 D CYS 119 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc10 B SG CYS 134 D CYS 122 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc11 B ND1 HIS 144 D HIS 132 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 B SG CYS 145 D CYS 133 1_555 L ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc13 B SG CYS 148 D CYS 136 1_555 L ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc14 B SG CYS 151 D CYS 139 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc15 B SG CYS 165 D CYS 153 1_555 L ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 342 n n C1 O2 PLM doub 343 n n C1 C2 PLM sing 344 n n O1 H PLM sing 345 n n C2 C3 PLM sing 346 n n C2 H21 PLM sing 347 n n C2 H22 PLM sing 348 n n C3 C4 PLM sing 349 n n C3 H31 PLM sing 350 n n C3 H32 PLM sing 351 n n C4 C5 PLM sing 352 n n C4 H41 PLM sing 353 n n C4 H42 PLM sing 354 n n C5 C6 PLM sing 355 n n C5 H51 PLM sing 356 n n C5 H52 PLM sing 357 n n C6 C7 PLM sing 358 n n C6 H61 PLM sing 359 n n C6 H62 PLM sing 360 n n C7 C8 PLM sing 361 n n C7 H71 PLM sing 362 n n C7 H72 PLM sing 363 n n C8 C9 PLM sing 364 n n C8 H81 PLM sing 365 n n C8 H82 PLM sing 366 n n C9 CA PLM sing 367 n n C9 H91 PLM sing 368 n n C9 H92 PLM sing 369 n n CA CB PLM sing 370 n n CA HA1 PLM sing 371 n n CA HA2 PLM sing 372 n n CB CC PLM sing 373 n n CB HB1 PLM sing 374 n n CB HB2 PLM sing 375 n n CC CD PLM sing 376 n n CC HC1 PLM sing 377 n n CC HC2 PLM sing 378 n n CD CE PLM sing 379 n n CD HD1 PLM sing 380 n n CD HD2 PLM sing 381 n n CE CF PLM sing 382 n n CE HE1 PLM sing 383 n n CE HE2 PLM sing 384 n n CF CG PLM sing 385 n n CF HF1 PLM sing 386 n n CF HF2 PLM sing 387 n n CG HG1 PLM sing 388 n n CG HG2 PLM sing 389 n n CG HG3 PLM sing 390 n n # _atom_sites.entry_id 6BMS _atom_sites.fract_transf_matrix[1][1] 0.005365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 2 ZN A 1 1002 1002 ZN ZN . E 3 LMT A 1 1003 2043 LMT LMT . F 3 LMT A 1 1004 2043 LMT LMT . G 3 LMT A 1 1005 2043 LMT LMT . H 4 PLM A 1 1006 2 PLM PLM . I 5 POV A 1 1007 1 POV POV . J 6 PO4 A 1 1008 1 PO4 PO4 . K 2 ZN D 1 1001 1001 ZN ZN . L 2 ZN D 1 1002 1002 ZN ZN . M 3 LMT D 1 1003 2043 LMT LMT . N 4 PLM D 1 1004 3 PLM PLM . O 6 PO4 D 1 1005 1 PO4 PO4 . P 6 PO4 D 1 1006 1 PO4 PO4 . Q 3 LMT D 1 1007 1 LMT LMT . R 7 HOH A 1 1101 6 HOH HOH . R 7 HOH A 2 1102 57 HOH HOH . R 7 HOH A 3 1103 2 HOH HOH . R 7 HOH A 4 1104 42 HOH HOH . R 7 HOH A 5 1105 22 HOH HOH . R 7 HOH A 6 1106 53 HOH HOH . R 7 HOH A 7 1107 58 HOH HOH . R 7 HOH A 8 1108 23 HOH HOH . R 7 HOH A 9 1109 69 HOH HOH . R 7 HOH A 10 1110 18 HOH HOH . R 7 HOH A 11 1111 16 HOH HOH . R 7 HOH A 12 1112 32 HOH HOH . R 7 HOH A 13 1113 7 HOH HOH . R 7 HOH A 14 1114 5 HOH HOH . R 7 HOH A 15 1115 36 HOH HOH . R 7 HOH A 16 1116 61 HOH HOH . R 7 HOH A 17 1117 17 HOH HOH . R 7 HOH A 18 1118 10 HOH HOH . R 7 HOH A 19 1119 80 HOH HOH . R 7 HOH A 20 1120 11 HOH HOH . R 7 HOH A 21 1121 30 HOH HOH . R 7 HOH A 22 1122 46 HOH HOH . R 7 HOH A 23 1123 48 HOH HOH . R 7 HOH A 24 1124 64 HOH HOH . R 7 HOH A 25 1125 74 HOH HOH . R 7 HOH A 26 1126 78 HOH HOH . S 7 HOH D 1 1101 27 HOH HOH . S 7 HOH D 2 1102 55 HOH HOH . S 7 HOH D 3 1103 4 HOH HOH . S 7 HOH D 4 1104 3 HOH HOH . S 7 HOH D 5 1105 29 HOH HOH . S 7 HOH D 6 1106 21 HOH HOH . S 7 HOH D 7 1107 8 HOH HOH . S 7 HOH D 8 1108 54 HOH HOH . S 7 HOH D 9 1109 12 HOH HOH . S 7 HOH D 10 1110 52 HOH HOH . S 7 HOH D 11 1111 15 HOH HOH . S 7 HOH D 12 1112 43 HOH HOH . S 7 HOH D 13 1113 44 HOH HOH . S 7 HOH D 14 1114 26 HOH HOH . S 7 HOH D 15 1115 37 HOH HOH . S 7 HOH D 16 1116 35 HOH HOH . S 7 HOH D 17 1117 50 HOH HOH . S 7 HOH D 18 1118 47 HOH HOH . S 7 HOH D 19 1119 45 HOH HOH . S 7 HOH D 20 1120 28 HOH HOH . S 7 HOH D 21 1121 76 HOH HOH . S 7 HOH D 22 1122 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . N 4 -47.667 -16.168 -23.256 1 69 ? C1 PLM 1004 D 1 HETATM 2 O O1 PLM . . . N 4 -48.194 -16.21 -22.113 1 81.65 ? O1 PLM 1004 D 1 HETATM 3 O O2 PLM . . . N 4 -47.79 -16.979 -24.209 1 69.19 ? O2 PLM 1004 D 1 HETATM 4 C C2 PLM . . . N 4 -46.727 -14.951 -23.554 1 78.18 ? C2 PLM 1004 D 1 HETATM 5 C C3 PLM . . . N 4 -46.528 -13.957 -22.406 1 71.33 ? C3 PLM 1004 D 1 HETATM 6 C C4 PLM . . . N 4 -45.205 -13.186 -22.486 1 75 ? C4 PLM 1004 D 1 HETATM 7 C C5 PLM . . . N 4 -45.052 -12.075 -21.441 1 71.11 ? C5 PLM 1004 D 1 HETATM 8 C C6 PLM . . . N 4 -43.768 -11.266 -21.626 1 70.76 ? C6 PLM 1004 D 1 HETATM 9 C C7 PLM . . . N 4 -43.598 -10.089 -20.664 1 70.2 ? C7 PLM 1004 D 1 HETATM 10 C C8 PLM . . . N 4 -42.392 -9.214 -21.015 1 71.73 ? C8 PLM 1004 D 1 HETATM 11 C C9 PLM . . . N 4 -41.964 -8.256 -19.905 1 88.94 ? C9 PLM 1004 D 1 HETATM 12 C CA PLM . . . N 4 -40.634 -7.554 -20.199 1 100.54 ? CA PLM 1004 D 1 HETATM 13 C CB PLM . . . N 4 -40.175 -6.611 -19.083 1 103.22 ? CB PLM 1004 D 1 HETATM 14 C CC PLM . . . N 4 -40.584 -5.152 -19.305 1 99.67 ? CC PLM 1004 D 1 HETATM 15 C CD PLM . . . N 4 -40.282 -4.245 -18.108 1 99.57 ? CD PLM 1004 D 1 HETATM 16 C CE PLM . . . N 4 -39.633 -2.911 -18.493 1 101.68 ? CE PLM 1004 D 1 HETATM 17 C CF PLM . . . N 4 -39.46 -1.948 -17.314 1 108.21 ? CF PLM 1004 D 1 HETATM 18 C CG PLM . . . N 4 -40.585 -0.919 -17.194 1 108.34 ? CG PLM 1004 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #