data_6BMS
#
_model_server_result.job_id            AfWxGdsOTqPqQ1GXBup0Nw 
_model_server_result.datetime_utc      '2024-11-23 11:03:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6bms 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1008}' 
#
_entry.id    6BMS 
#
_exptl.entry_id    6BMS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6BMS 
_cell.length_a            186.402 
_cell.length_b            186.402 
_cell.length_c            90.177 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6BMS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,R 1 1 
B,K,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 J N N 
? 6 O N N 
? 6 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 131 A CYS 115 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc2 A SG CYS 134 A CYS 118 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc3 A ND1 HIS 144 A HIS 128 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc4 A SG CYS 145 A CYS 129 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc5 A SG CYS 148 A CYS 132 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc6 A SG CYS 151 A CYS 135 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc7 A ND1 HIS 158 A HIS 142 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc8 A SG CYS 165 A CYS 149 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc9 B SG CYS 131 D CYS 119 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc10 B SG CYS 134 D CYS 122 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc11 B ND1 HIS 144 D HIS 132 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc12 B SG CYS 145 D CYS 133 1_555 L ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc13 B SG CYS 148 D CYS 136 1_555 L ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc14 B SG CYS 151 D CYS 139 1_555 K ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc15 B SG CYS 165 D CYS 153 1_555 L ZN ZN . D ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 391 n n 
P O2 PO4 sing 392 n n 
P O3 PO4 sing 393 n n 
P O4 PO4 sing 394 n n 
#
_atom_sites.entry_id                     6BMS 
_atom_sites.fract_transf_matrix[1][1]    0.005365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1001 1001 ZN ZN . 
D 2 ZN A 1 1002 1002 ZN ZN . 
E 3 LMT A 1 1003 2043 LMT LMT . 
F 3 LMT A 1 1004 2043 LMT LMT . 
G 3 LMT A 1 1005 2043 LMT LMT . 
H 4 PLM A 1 1006 2 PLM PLM . 
I 5 POV A 1 1007 1 POV POV . 
J 6 PO4 A 1 1008 1 PO4 PO4 . 
K 2 ZN D 1 1001 1001 ZN ZN . 
L 2 ZN D 1 1002 1002 ZN ZN . 
M 3 LMT D 1 1003 2043 LMT LMT . 
N 4 PLM D 1 1004 3 PLM PLM . 
O 6 PO4 D 1 1005 1 PO4 PO4 . 
P 6 PO4 D 1 1006 1 PO4 PO4 . 
Q 3 LMT D 1 1007 1 LMT LMT . 
R 7 HOH A 1 1101 6 HOH HOH . 
R 7 HOH A 2 1102 57 HOH HOH . 
R 7 HOH A 3 1103 2 HOH HOH . 
R 7 HOH A 4 1104 42 HOH HOH . 
R 7 HOH A 5 1105 22 HOH HOH . 
R 7 HOH A 6 1106 53 HOH HOH . 
R 7 HOH A 7 1107 58 HOH HOH . 
R 7 HOH A 8 1108 23 HOH HOH . 
R 7 HOH A 9 1109 69 HOH HOH . 
R 7 HOH A 10 1110 18 HOH HOH . 
R 7 HOH A 11 1111 16 HOH HOH . 
R 7 HOH A 12 1112 32 HOH HOH . 
R 7 HOH A 13 1113 7 HOH HOH . 
R 7 HOH A 14 1114 5 HOH HOH . 
R 7 HOH A 15 1115 36 HOH HOH . 
R 7 HOH A 16 1116 61 HOH HOH . 
R 7 HOH A 17 1117 17 HOH HOH . 
R 7 HOH A 18 1118 10 HOH HOH . 
R 7 HOH A 19 1119 80 HOH HOH . 
R 7 HOH A 20 1120 11 HOH HOH . 
R 7 HOH A 21 1121 30 HOH HOH . 
R 7 HOH A 22 1122 46 HOH HOH . 
R 7 HOH A 23 1123 48 HOH HOH . 
R 7 HOH A 24 1124 64 HOH HOH . 
R 7 HOH A 25 1125 74 HOH HOH . 
R 7 HOH A 26 1126 78 HOH HOH . 
S 7 HOH D 1 1101 27 HOH HOH . 
S 7 HOH D 2 1102 55 HOH HOH . 
S 7 HOH D 3 1103 4 HOH HOH . 
S 7 HOH D 4 1104 3 HOH HOH . 
S 7 HOH D 5 1105 29 HOH HOH . 
S 7 HOH D 6 1106 21 HOH HOH . 
S 7 HOH D 7 1107 8 HOH HOH . 
S 7 HOH D 8 1108 54 HOH HOH . 
S 7 HOH D 9 1109 12 HOH HOH . 
S 7 HOH D 10 1110 52 HOH HOH . 
S 7 HOH D 11 1111 15 HOH HOH . 
S 7 HOH D 12 1112 43 HOH HOH . 
S 7 HOH D 13 1113 44 HOH HOH . 
S 7 HOH D 14 1114 26 HOH HOH . 
S 7 HOH D 15 1115 37 HOH HOH . 
S 7 HOH D 16 1116 35 HOH HOH . 
S 7 HOH D 17 1117 50 HOH HOH . 
S 7 HOH D 18 1118 47 HOH HOH . 
S 7 HOH D 19 1119 45 HOH HOH . 
S 7 HOH D 20 1120 28 HOH HOH . 
S 7 HOH D 21 1121 76 HOH HOH . 
S 7 HOH D 22 1122 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . J 6 -32.968 30.615 -25 1 136.62 ? P PO4 1008 A 1 
HETATM 2 O O1 PO4 . . . J 6 -33.217 31.794 -25.909 1 141.11 ? O1 PO4 1008 A 1 
HETATM 3 O O2 PO4 . . . J 6 -33.26 29.336 -25.747 1 141.43 ? O2 PO4 1008 A 1 
HETATM 4 O O3 PO4 . . . J 6 -33.869 30.709 -23.791 1 128.87 ? O3 PO4 1008 A 1 
HETATM 5 O O4 PO4 . . . J 6 -31.525 30.622 -24.555 1 139.05 ? O4 PO4 1008 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#