data_6BMT # _model_server_result.job_id 2hg44zQZ_B0o-lp10c2znQ _model_server_result.datetime_utc '2024-10-12 01:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":805}' # _entry.id 6BMT # _exptl.entry_id 6BMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BMT _cell.length_a 84.626 _cell.length_b 90.674 _cell.length_c 125.661 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 167 A CYS 167 1_555 A SG CYS 180 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf2 A SG CYS 281 A CYS 281 1_555 A SG CYS 291 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 285 A CYS 285 1_555 A SG CYS 309 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf4 A SG CYS 387 A CYS 387 1_555 A SG CYS 398 A CYS 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf5 A SG CYS 606 A CYS 606 1_555 A SG CYS 663 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? disulf ? disulf6 A SG CYS 704 A CYS 704 1_555 A SG CYS 730 A CYS 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A SD MET 409 A MET 409 1_555 D CBB HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc1 A O ASP 262 A ASP 262 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 A OD1 ASP 262 A ASP 262 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A O THR 334 A THR 334 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc4 A OG1 THR 334 A THR 334 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 A O PHE 336 A PHE 336 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc6 A OD1 ASP 338 A ASP 338 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc7 A OG SER 340 A SER 340 1_555 C CA CA . A CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc8 A NE2 HIS 502 A HIS 502 1_555 D FE HEM . A HEM 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 319 n n C1 O1 NAG sing 320 n n C1 O5 NAG sing 321 n n C1 H1 NAG sing 322 n n C2 C3 NAG sing 323 n n C2 N2 NAG sing 324 n n C2 H2 NAG sing 325 n n C3 C4 NAG sing 326 n n C3 O3 NAG sing 327 n n C3 H3 NAG sing 328 n n C4 C5 NAG sing 329 n n C4 O4 NAG sing 330 n n C4 H4 NAG sing 331 n n C5 C6 NAG sing 332 n n C5 O5 NAG sing 333 n n C5 H5 NAG sing 334 n n C6 O6 NAG sing 335 n n C6 H61 NAG sing 336 n n C6 H62 NAG sing 337 n n C7 C8 NAG sing 338 n n C7 N2 NAG sing 339 n n C7 O7 NAG doub 340 n n C8 H81 NAG sing 341 n n C8 H82 NAG sing 342 n n C8 H83 NAG sing 343 n n N2 HN2 NAG sing 344 n n O1 HO1 NAG sing 345 n n O3 HO3 NAG sing 346 n n O4 HO4 NAG sing 347 n n O6 HO6 NAG sing 348 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6BMT _atom_sites.fract_transf_matrix[1][1] 0.011817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 801 812 CA CA . D 4 HEM A 1 802 813 HEM HEM . E 5 CL A 1 803 814 CL CL . F 6 NAG A 1 804 1007 NAG NAG . G 6 NAG A 1 805 1008 NAG NAG . H 6 NAG A 1 806 1009 NAG NAG . I 7 HOH A 1 901 901 HOH HOH . I 7 HOH A 2 902 902 HOH HOH . I 7 HOH A 3 903 903 HOH HOH . I 7 HOH A 4 904 904 HOH HOH . I 7 HOH A 5 905 905 HOH HOH . I 7 HOH A 6 906 906 HOH HOH . I 7 HOH A 7 907 908 HOH HOH . I 7 HOH A 8 908 909 HOH HOH . I 7 HOH A 9 909 910 HOH HOH . I 7 HOH A 10 910 911 HOH HOH . I 7 HOH A 11 911 912 HOH HOH . I 7 HOH A 12 912 913 HOH HOH . I 7 HOH A 13 913 914 HOH HOH . I 7 HOH A 14 914 915 HOH HOH . I 7 HOH A 15 915 916 HOH HOH . I 7 HOH A 16 916 917 HOH HOH . I 7 HOH A 17 917 918 HOH HOH . I 7 HOH A 18 918 919 HOH HOH . I 7 HOH A 19 919 920 HOH HOH . I 7 HOH A 20 920 921 HOH HOH . I 7 HOH A 21 921 922 HOH HOH . I 7 HOH A 22 922 923 HOH HOH . I 7 HOH A 23 923 924 HOH HOH . I 7 HOH A 24 924 925 HOH HOH . I 7 HOH A 25 925 926 HOH HOH . I 7 HOH A 26 926 927 HOH HOH . I 7 HOH A 27 927 928 HOH HOH . I 7 HOH A 28 928 929 HOH HOH . I 7 HOH A 29 929 930 HOH HOH . I 7 HOH A 30 930 931 HOH HOH . I 7 HOH A 31 931 932 HOH HOH . I 7 HOH A 32 932 934 HOH HOH . I 7 HOH A 33 933 935 HOH HOH . I 7 HOH A 34 934 936 HOH HOH . I 7 HOH A 35 935 937 HOH HOH . I 7 HOH A 36 936 938 HOH HOH . I 7 HOH A 37 937 939 HOH HOH . I 7 HOH A 38 938 940 HOH HOH . I 7 HOH A 39 939 941 HOH HOH . I 7 HOH A 40 940 942 HOH HOH . I 7 HOH A 41 941 943 HOH HOH . I 7 HOH A 42 942 945 HOH HOH . I 7 HOH A 43 943 946 HOH HOH . I 7 HOH A 44 944 947 HOH HOH . I 7 HOH A 45 945 948 HOH HOH . I 7 HOH A 46 946 949 HOH HOH . I 7 HOH A 47 947 950 HOH HOH . I 7 HOH A 48 948 951 HOH HOH . I 7 HOH A 49 949 953 HOH HOH . I 7 HOH A 50 950 954 HOH HOH . I 7 HOH A 51 951 955 HOH HOH . I 7 HOH A 52 952 956 HOH HOH . I 7 HOH A 53 953 957 HOH HOH . I 7 HOH A 54 954 958 HOH HOH . I 7 HOH A 55 955 959 HOH HOH . I 7 HOH A 56 956 952 HOH HOH . I 7 HOH A 57 957 960 HOH HOH . I 7 HOH A 58 958 961 HOH HOH . I 7 HOH A 59 959 962 HOH HOH . I 7 HOH A 60 960 963 HOH HOH . I 7 HOH A 61 961 964 HOH HOH . I 7 HOH A 62 962 965 HOH HOH . I 7 HOH A 63 963 966 HOH HOH . I 7 HOH A 64 964 967 HOH HOH . I 7 HOH A 65 965 968 HOH HOH . I 7 HOH A 66 966 969 HOH HOH . I 7 HOH A 67 967 970 HOH HOH . I 7 HOH A 68 968 971 HOH HOH . I 7 HOH A 69 969 972 HOH HOH . I 7 HOH A 70 970 973 HOH HOH . I 7 HOH A 71 971 974 HOH HOH . I 7 HOH A 72 972 975 HOH HOH . I 7 HOH A 73 973 976 HOH HOH . I 7 HOH A 74 974 977 HOH HOH . I 7 HOH A 75 975 978 HOH HOH . I 7 HOH A 76 976 979 HOH HOH . I 7 HOH A 77 977 980 HOH HOH . I 7 HOH A 78 978 981 HOH HOH . I 7 HOH A 79 979 982 HOH HOH . I 7 HOH A 80 980 983 HOH HOH . I 7 HOH A 81 981 984 HOH HOH . I 7 HOH A 82 982 985 HOH HOH . I 7 HOH A 83 983 986 HOH HOH . I 7 HOH A 84 984 987 HOH HOH . I 7 HOH A 85 985 988 HOH HOH . I 7 HOH A 86 986 989 HOH HOH . I 7 HOH A 87 987 990 HOH HOH . I 7 HOH A 88 988 991 HOH HOH . I 7 HOH A 89 989 992 HOH HOH . I 7 HOH A 90 990 993 HOH HOH . I 7 HOH A 91 991 994 HOH HOH . I 7 HOH A 92 992 995 HOH HOH . I 7 HOH A 93 993 996 HOH HOH . I 7 HOH A 94 994 997 HOH HOH . I 7 HOH A 95 995 998 HOH HOH . I 7 HOH A 96 996 999 HOH HOH . I 7 HOH A 97 997 1000 HOH HOH . I 7 HOH A 98 998 1001 HOH HOH . I 7 HOH A 99 999 1002 HOH HOH . I 7 HOH A 100 1000 933 HOH HOH . I 7 HOH A 101 1001 1003 HOH HOH . I 7 HOH A 102 1002 1004 HOH HOH . J 7 HOH B 1 201 201 HOH HOH . J 7 HOH B 2 202 202 HOH HOH . J 7 HOH B 3 203 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 6 16.084 25.905 164.318 1 66.52 ? C1 NAG 805 A 1 HETATM 2 C C2 NAG . . . G 6 17.54 25.882 163.869 1 67.01 ? C2 NAG 805 A 1 HETATM 3 C C3 NAG . . . G 6 18.483 25.964 165.064 1 70.79 ? C3 NAG 805 A 1 HETATM 4 C C4 NAG . . . G 6 18.086 27.104 165.995 1 72.26 ? C4 NAG 805 A 1 HETATM 5 C C5 NAG . . . G 6 16.597 27.054 166.316 1 68.75 ? C5 NAG 805 A 1 HETATM 6 C C6 NAG . . . G 6 16.187 28.238 167.185 1 65.88 ? C6 NAG 805 A 1 HETATM 7 C C7 NAG . . . G 6 16.961 24.242 162.177 1 57.6 ? C7 NAG 805 A 1 HETATM 8 C C8 NAG . . . G 6 16.716 22.762 162.158 1 57.86 ? C8 NAG 805 A 1 HETATM 9 N N2 NAG . . . G 6 17.805 24.675 163.11 1 68.66 ? N2 NAG 805 A 1 HETATM 10 O O3 NAG . . . G 6 19.822 26.169 164.601 1 79.43 ? O3 NAG 805 A 1 HETATM 11 O O4 NAG . . . G 6 18.84 27.012 167.209 1 79.61 ? O4 NAG 805 A 1 HETATM 12 O O5 NAG . . . G 6 15.848 27.072 165.103 1 69.9 ? O5 NAG 805 A 1 HETATM 13 O O6 NAG . . . G 6 16.482 29.459 166.498 1 65.34 ? O6 NAG 805 A 1 HETATM 14 O O7 NAG . . . G 6 16.422 25 161.387 1 52.41 ? O7 NAG 805 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #