data_6BMZ # _model_server_result.job_id jVBQl3KcoyNRX6wWEHBJVw _model_server_result.datetime_utc '2025-01-10 21:18:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":101}' # _entry.id 6BMZ # _exptl.entry_id 6BMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(1r,1'S,3'S,5'S,7'S)-spiro[cyclohexane-1,2'-tricyclo[3.3.1.1~3,7~]decan]-4-amine" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BMZ _cell.length_a 49.62 _cell.length_b 72.59 _cell.length_c 99.25 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,Q,R,Y,Z,AA,BA 1 1 E,F,G,H,S,T,CA,DA,EA,FA 2 1 I,J,K,L,U,V,GA,HA,IA,JA 3 1 M,N,O,P,W,X,KA,LA,MA,NA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 S N N ? 2 V N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 26 A LEU 46 1_555 A N NH2 27 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 B C LEU 26 B LEU 46 1_555 B N NH2 27 B NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C LEU 26 C LEU 46 1_555 C N NH2 27 C NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 D C LEU 26 D LEU 46 1_555 D N NH2 27 D NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 E C LEU 26 E LEU 46 1_555 E N NH2 27 E NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 F C LEU 26 F LEU 46 1_555 F N NH2 27 F NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 G C LEU 26 G LEU 46 1_555 G N NH2 27 G NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 H C LEU 26 H LEU 46 1_555 H N NH2 27 H NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 I C LEU 26 I LEU 46 1_555 I N NH2 27 I NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 J C LEU 26 J LEU 46 1_555 J N NH2 27 J NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 K C LEU 26 K LEU 46 1_555 K N NH2 27 K NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 L C LEU 26 L LEU 46 1_555 L N NH2 27 L NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 M C LEU 26 M LEU 46 1_555 M N NH2 27 M NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 N C LEU 26 N LEU 46 1_555 N N NH2 27 N NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 O C LEU 26 O LEU 46 1_555 O N NH2 27 O NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 P C LEU 26 P LEU 46 1_555 P N NH2 27 P NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C15 H25 N' _chem_comp.formula_weight 219.366 _chem_comp.id E01 _chem_comp.mon_nstd_flag . _chem_comp.name "(1r,1'S,3'S,5'S,7'S)-spiro[cyclohexane-1,2'-tricyclo[3.3.1.1~3,7~]decan]-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C11 E01 sing 60 n n C15 C12 E01 sing 61 n n C11 C10 E01 sing 62 n n C11 C4 E01 sing 63 n n C10 C9 E01 sing 64 n n C6 C5 E01 sing 65 n n C6 C1 E01 sing 66 n n N1 C1 E01 sing 67 n n C12 C13 E01 sing 68 n n C12 C14 E01 sing 69 n n C4 C5 E01 sing 70 n n C4 C3 E01 sing 71 n n C4 C7 E01 sing 72 n n C13 C9 E01 sing 73 n n C3 C2 E01 sing 74 n n C9 C8 E01 sing 75 n n C1 C2 E01 sing 76 n n C14 C7 E01 sing 77 n n C7 C8 E01 sing 78 n n C1 H1 E01 sing 79 n n C2 H2B E01 sing 80 n n C2 H2A E01 sing 81 n n C3 H3B E01 sing 82 n n C3 H3A E01 sing 83 n n C5 H5B E01 sing 84 n n C5 H5A E01 sing 85 n n C6 H6B E01 sing 86 n n C6 H6A E01 sing 87 n n C14 H14A E01 sing 88 n n C14 H14B E01 sing 89 n n C15 H15A E01 sing 90 n n C15 H15B E01 sing 91 n n C12 H12 E01 sing 92 n n C11 H11 E01 sing 93 n n C10 H10B E01 sing 94 n n C10 H10A E01 sing 95 n n C7 H7 E01 sing 96 n n C8 H8A E01 sing 97 n n C8 H8B E01 sing 98 n n C9 H9 E01 sing 99 n n C13 H13A E01 sing 100 n n C13 H13B E01 sing 101 n n N1 H1B E01 sing 102 n n N1 H1A E01 sing 103 n n # _atom_sites.entry_id 6BMZ _atom_sites.fract_transf_matrix[1][1] 0.020153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 E01 A 1 101 1 E01 E01 . R 3 CL D 1 101 1 CL CL . S 2 E01 E 1 101 1 E01 E01 . T 3 CL G 1 101 3 CL CL . U 3 CL I 1 101 2 CL CL . V 2 E01 K 1 101 1 E01 E01 . W 2 E01 P 1 101 1 E01 E01 . X 3 CL P 1 102 4 CL CL . Y 4 HOH A 1 201 24 HOH HOH . Y 4 HOH A 2 202 44 HOH HOH . Y 4 HOH A 3 203 13 HOH HOH . Y 4 HOH A 4 204 60 HOH HOH . Y 4 HOH A 5 205 43 HOH HOH . Y 4 HOH A 6 206 36 HOH HOH . Z 4 HOH B 1 101 64 HOH HOH . AA 4 HOH C 1 101 12 HOH HOH . AA 4 HOH C 2 102 48 HOH HOH . AA 4 HOH C 3 103 47 HOH HOH . AA 4 HOH C 4 104 46 HOH HOH . AA 4 HOH C 5 105 53 HOH HOH . AA 4 HOH C 6 106 14 HOH HOH . AA 4 HOH C 7 107 33 HOH HOH . AA 4 HOH C 8 108 63 HOH HOH . AA 4 HOH C 9 109 61 HOH HOH . AA 4 HOH C 10 110 42 HOH HOH . BA 4 HOH D 1 201 18 HOH HOH . BA 4 HOH D 2 202 16 HOH HOH . BA 4 HOH D 3 203 32 HOH HOH . BA 4 HOH D 4 204 62 HOH HOH . CA 4 HOH E 1 201 59 HOH HOH . CA 4 HOH E 2 202 30 HOH HOH . DA 4 HOH F 1 101 17 HOH HOH . DA 4 HOH F 2 102 31 HOH HOH . EA 4 HOH G 1 201 5 HOH HOH . EA 4 HOH G 2 202 50 HOH HOH . EA 4 HOH G 3 203 7 HOH HOH . EA 4 HOH G 4 204 56 HOH HOH . FA 4 HOH H 1 101 6 HOH HOH . FA 4 HOH H 2 102 1 HOH HOH . FA 4 HOH H 3 103 27 HOH HOH . GA 4 HOH I 1 201 67 HOH HOH . GA 4 HOH I 2 202 71 HOH HOH . GA 4 HOH I 3 203 45 HOH HOH . GA 4 HOH I 4 204 41 HOH HOH . GA 4 HOH I 5 205 19 HOH HOH . GA 4 HOH I 6 206 25 HOH HOH . HA 4 HOH J 1 101 22 HOH HOH . HA 4 HOH J 2 102 49 HOH HOH . HA 4 HOH J 3 103 55 HOH HOH . HA 4 HOH J 4 104 37 HOH HOH . IA 4 HOH K 1 201 3 HOH HOH . IA 4 HOH K 2 202 70 HOH HOH . IA 4 HOH K 3 203 40 HOH HOH . JA 4 HOH L 1 101 52 HOH HOH . JA 4 HOH L 2 102 20 HOH HOH . JA 4 HOH L 3 103 21 HOH HOH . JA 4 HOH L 4 104 2 HOH HOH . JA 4 HOH L 5 105 57 HOH HOH . JA 4 HOH L 6 106 39 HOH HOH . JA 4 HOH L 7 107 58 HOH HOH . JA 4 HOH L 8 108 26 HOH HOH . KA 4 HOH M 1 101 65 HOH HOH . KA 4 HOH M 2 102 51 HOH HOH . KA 4 HOH M 3 103 38 HOH HOH . KA 4 HOH M 4 104 34 HOH HOH . LA 4 HOH N 1 101 11 HOH HOH . LA 4 HOH N 2 102 68 HOH HOH . LA 4 HOH N 3 103 54 HOH HOH . MA 4 HOH O 1 101 28 HOH HOH . MA 4 HOH O 2 102 69 HOH HOH . MA 4 HOH O 3 103 35 HOH HOH . NA 4 HOH P 1 201 10 HOH HOH . NA 4 HOH P 2 202 9 HOH HOH . NA 4 HOH P 3 203 66 HOH HOH . NA 4 HOH P 4 204 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E01 . . . S 2 -20.923 -19.003 -23.388 1 29.49 ? C1 E01 101 E 1 HETATM 2 C C2 E01 . . . S 2 -19.644 -19.765 -23.135 1 25.21 ? C2 E01 101 E 1 HETATM 3 C C3 E01 . . . S 2 -19.97 -21.056 -22.388 1 30.91 ? C3 E01 101 E 1 HETATM 4 C C4 E01 . . . S 2 -20.977 -21.98 -23.1 1 25.34 ? C4 E01 101 E 1 HETATM 5 C C5 E01 . . . S 2 -22.202 -21.113 -23.453 1 27.34 ? C5 E01 101 E 1 HETATM 6 C C6 E01 . . . S 2 -21.875 -19.832 -24.213 1 29.29 ? C6 E01 101 E 1 HETATM 7 C C14 E01 . . . S 2 -22.433 -24.045 -22.833 1 21.62 ? C14 E01 101 E 1 HETATM 8 C C15 E01 . . . S 2 -21.366 -23.573 -25.044 1 22.13 ? C15 E01 101 E 1 HETATM 9 C C12 E01 . . . S 2 -21.807 -24.683 -24.077 1 22.34 ? C12 E01 101 E 1 HETATM 10 C C11 E01 . . . S 2 -20.351 -22.656 -24.353 1 20.67 ? C11 E01 101 E 1 HETATM 11 C C10 E01 . . . S 2 -19.139 -23.516 -23.952 1 20.71 ? C10 E01 101 E 1 HETATM 12 C C7 E01 . . . S 2 -21.416 -23.124 -22.153 1 24.25 ? C7 E01 101 E 1 HETATM 13 C C8 E01 . . . S 2 -20.213 -23.977 -21.734 1 21.13 ? C8 E01 101 E 1 HETATM 14 C C9 E01 . . . S 2 -19.572 -24.61 -22.969 1 23.71 ? C9 E01 101 E 1 HETATM 15 C C13 E01 . . . S 2 -20.599 -25.513 -23.661 1 21.86 ? C13 E01 101 E 1 HETATM 16 N N1 E01 . . . S 2 -20.65 -17.691 -24.07 1 38.82 ? N1 E01 101 E 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 16 #