data_6BN1 # _model_server_result.job_id 6iUrD3SsVqywMgeQwtfylw _model_server_result.datetime_utc '2024-12-21 17:05:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6bn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 6BN1 # _exptl.entry_id 6BN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6BN1 _cell.length_a 49.934 _cell.length_b 49.934 _cell.length_c 186.169 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6BN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,C,D,E,H 2 1,3 B,F,G,I 2 2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_564 -y,x+1,z-1/4 0 -1 0 1 0 0 0 0 1 0 49.934 -46.54225 3 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 7_565 y,x+1,-z+1/4 0 1 0 1 0 0 0 0 -1 0 49.934 46.54225 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 622 1_555 A SG CYS 19 A CYS 622 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A ND1 HIS 23 A HIS 626 1_555 F NI NI . B NI 701 7_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc2 B N LEU 1 B LEU 531 1_555 F NI NI . B NI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6BN1 _atom_sites.fract_transf_matrix[1][1] 0.020027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MPD A 1 701 1 MPD MPD . D 3 MPD A 1 702 3 MPD MPD . E 3 MPD A 1 703 4 MPD MPD . F 4 NI B 1 701 1 NI NI . G 3 MPD B 1 702 2 MPD MPD . H 5 HOH A 1 801 48 HOH HOH . H 5 HOH A 2 802 15 HOH HOH . H 5 HOH A 3 803 2 HOH HOH . H 5 HOH A 4 804 18 HOH HOH . H 5 HOH A 5 805 6 HOH HOH . H 5 HOH A 6 806 24 HOH HOH . H 5 HOH A 7 807 11 HOH HOH . H 5 HOH A 8 808 26 HOH HOH . H 5 HOH A 9 809 8 HOH HOH . H 5 HOH A 10 810 20 HOH HOH . H 5 HOH A 11 811 19 HOH HOH . H 5 HOH A 12 812 4 HOH HOH . H 5 HOH A 13 813 14 HOH HOH . H 5 HOH A 14 814 50 HOH HOH . H 5 HOH A 15 815 28 HOH HOH . H 5 HOH A 16 816 51 HOH HOH . I 5 HOH B 1 801 35 HOH HOH . I 5 HOH B 2 802 16 HOH HOH . I 5 HOH B 3 803 13 HOH HOH . I 5 HOH B 4 804 23 HOH HOH . I 5 HOH B 5 805 37 HOH HOH . I 5 HOH B 6 806 10 HOH HOH . I 5 HOH B 7 807 56 HOH HOH . I 5 HOH B 8 808 3 HOH HOH . I 5 HOH B 9 809 12 HOH HOH . I 5 HOH B 10 810 34 HOH HOH . I 5 HOH B 11 811 25 HOH HOH . I 5 HOH B 12 812 27 HOH HOH . I 5 HOH B 13 813 41 HOH HOH . I 5 HOH B 14 814 42 HOH HOH . I 5 HOH B 15 815 57 HOH HOH . I 5 HOH B 16 816 1 HOH HOH . I 5 HOH B 17 817 33 HOH HOH . I 5 HOH B 18 818 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 -14.128 21.112 6.076 1 76.53 ? C1 MPD 701 A 1 HETATM 2 C C2 MPD . . . C 3 -13.018 20.984 5.045 1 81.42 ? C2 MPD 701 A 1 HETATM 3 O O2 MPD . . . C 3 -12.768 22.307 4.506 1 96.17 ? O2 MPD 701 A 1 HETATM 4 C CM MPD . . . C 3 -11.731 20.472 5.681 1 80.86 ? CM MPD 701 A 1 HETATM 5 C C3 MPD . . . C 3 -13.441 20.03 3.935 1 78.27 ? C3 MPD 701 A 1 HETATM 6 C C4 MPD . . . C 3 -14.761 20.454 3.295 1 84.2 ? C4 MPD 701 A 1 HETATM 7 O O4 MPD . . . C 3 -14.549 21.271 2.15 1 77.62 ? O4 MPD 701 A 1 HETATM 8 C C5 MPD . . . C 3 -15.576 19.215 2.934 1 75.61 ? C5 MPD 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #